Wall clock time and date at job start Mon Mar 30 2020 02:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21281 * 119.99699 * 2 1 4 4 N 1.34773 * 120.00080 * 180.02562 * 2 1 3 5 5 C 1.46506 * 119.99969 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47237 * 179.72043 * 5 4 2 7 7 C 1.52996 * 109.46929 * 179.97438 * 6 5 4 8 8 H 1.08994 * 110.88761 * 54.30030 * 7 6 5 9 9 C 1.55161 * 111.00088 * 178.18420 * 7 6 5 10 10 C 1.54326 * 102.94197 * 153.57819 * 9 7 6 11 11 N 1.47025 * 107.26870 * 337.80282 * 10 9 7 12 12 C 1.36937 * 125.64312 * 178.97619 * 11 10 9 13 13 H 1.08004 * 119.99824 * 179.97438 * 12 11 10 14 14 C 1.38808 * 120.00269 * 359.97438 * 12 11 10 15 15 N 1.31615 * 120.00352 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00000 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47064 * 90.00215 * 16 14 12 18 18 H 1.48499 * 109.47168 * 210.00019 * 16 14 12 19 19 H 1.48504 * 109.47024 * 330.00251 * 16 14 12 20 20 C 1.47456 * 108.72358 * 358.97582 * 11 10 9 21 21 H 1.09005 * 109.46472 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47067 * 299.99773 * 1 2 3 23 23 H 1.08997 * 109.46904 * 60.00396 * 1 2 3 24 24 H 0.97005 * 120.00161 * 359.72088 * 4 2 1 25 25 H 1.09001 * 109.46512 * 299.72412 * 5 4 2 26 26 H 1.08998 * 109.47174 * 59.71534 * 5 4 2 27 27 H 1.09000 * 109.46986 * 299.99958 * 6 5 4 28 28 H 1.09002 * 109.46857 * 60.00093 * 6 5 4 29 29 H 1.09004 * 110.71798 * 271.93560 * 9 7 6 30 30 H 1.08995 * 110.72667 * 35.03610 * 9 7 6 31 31 H 1.09000 * 109.88236 * 97.22242 * 10 9 7 32 32 H 1.08997 * 109.88252 * 218.23213 * 10 9 7 33 33 H 0.96994 * 120.00436 * 180.02562 * 15 14 12 34 34 H 1.08999 * 110.35502 * 265.25120 * 20 11 10 35 35 H 1.09000 * 110.40485 * 142.91531 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6460 -1.1671 0.0000 6 6 4.1560 -2.6096 0.0063 7 6 5.6860 -2.6095 0.0063 8 1 6.0746 -2.0116 0.8306 9 6 6.2422 -4.0570 0.0584 10 6 7.6235 -3.9211 -0.6162 11 7 7.5831 -2.7137 -1.4541 12 6 8.6200 -2.2289 -2.2058 13 1 8.4892 -1.3301 -2.7903 14 6 9.8391 -2.8925 -2.2165 15 7 9.9984 -3.9880 -1.5046 16 14 11.2533 -2.2315 -3.2425 17 1 12.0570 -1.2860 -2.4267 18 1 12.1133 -3.3586 -3.6845 19 1 10.7139 -1.5244 -4.4317 20 6 6.2413 -2.1109 -1.3513 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6960 -2.0073 0.0032 25 1 4.0096 -0.6570 -0.8920 26 1 4.0090 -0.6495 0.8879 27 1 3.7924 -3.1196 0.8983 28 1 3.7931 -3.1271 -0.8817 29 1 6.3483 -4.3924 1.0902 30 1 5.6012 -4.7370 -0.5026 31 1 8.3986 -3.8195 0.1434 32 1 7.8223 -4.7971 -1.2336 33 1 10.8504 -4.4515 -1.5118 34 1 5.6078 -2.4540 -2.1693 35 1 6.3119 -1.0232 -1.3557 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732041567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:35 Heat of formation + Delta-G solvation = -53.473567 kcal Electronic energy + Delta-G solvation = -15520.790546 eV Core-core repulsion = 12938.788119 eV Total energy + Delta-G solvation = -2582.002427 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.59827 -39.37620 -36.43240 -34.74558 -32.69937 -31.12131 -30.12308 -27.89173 -26.38712 -23.61900 -21.91837 -21.71634 -20.77533 -18.87363 -17.75761 -17.00483 -16.93606 -16.61444 -16.25115 -15.57988 -15.17613 -14.57111 -14.15002 -13.87230 -13.71521 -13.45007 -13.15953 -13.13148 -12.91971 -12.80976 -12.63433 -12.23671 -12.01472 -11.80666 -11.56236 -11.39704 -11.32904 -10.89423 -10.71463 -10.08126 -8.89717 -7.86263 -5.21676 1.43740 1.46096 1.54826 1.67894 2.34044 2.48699 3.31506 3.67049 3.78905 3.98045 4.00416 4.16272 4.33711 4.37029 4.56225 4.61727 4.69463 4.70935 4.76567 4.90352 4.99828 5.08879 5.15053 5.19671 5.25857 5.43699 5.49378 5.52373 5.70450 5.78870 6.20209 6.64324 7.10411 7.32566 7.78276 8.42502 9.24066 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.047373 B = 0.005023 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.913141 B = 5572.720533 C = 6048.947259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.496 3.504 3 O -0.611 6.611 4 N -0.715 5.715 5 C 0.119 3.881 6 C -0.097 4.097 7 C -0.087 4.087 8 H 0.070 0.930 9 C -0.122 4.122 10 C 0.180 3.820 11 N -0.632 5.632 12 C -0.247 4.247 13 H 0.078 0.922 14 C -0.066 4.066 15 N -0.951 5.951 16 Si 0.979 3.021 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.270 1.270 20 C 0.133 3.867 21 H 0.109 0.891 22 H 0.101 0.899 23 H 0.099 0.901 24 H 0.419 0.581 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.007 0.993 32 H 0.004 0.996 33 H 0.247 0.753 34 H 0.025 0.975 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.719 0.694 4.685 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.286 3.714 3 O -0.493 6.493 4 N -0.368 5.368 5 C -0.006 4.006 6 C -0.135 4.135 7 C -0.107 4.107 8 H 0.088 0.912 9 C -0.160 4.160 10 C 0.055 3.945 11 N -0.358 5.358 12 C -0.376 4.376 13 H 0.096 0.904 14 C -0.259 4.259 15 N -0.600 5.600 16 Si 0.807 3.193 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.195 1.195 20 C 0.008 3.992 21 H 0.128 0.872 22 H 0.120 0.880 23 H 0.117 0.883 24 H 0.257 0.743 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -19.100 1.363 4.620 19.698 hybrid contribution 1.303 -0.049 -0.617 1.442 sum -17.797 1.315 4.004 18.289 Atomic orbital electron populations 1.21862 0.87698 1.06569 1.05826 1.21769 0.92583 0.82835 0.74247 1.90717 1.72399 1.33636 1.52532 1.46089 1.07023 1.09436 1.74269 1.21266 0.80226 0.98050 1.01036 1.21575 0.92824 0.94700 1.04417 1.22166 0.95202 0.96572 0.96729 0.91167 1.22761 0.95874 0.96346 1.00998 1.20947 0.93662 0.88010 0.91854 1.44862 1.09239 1.28182 1.53566 1.19482 0.90745 1.07187 1.20228 0.90403 1.25661 1.00373 0.98076 1.01824 1.70195 1.24265 1.20101 1.45462 0.85075 0.78923 0.76932 0.78388 1.21245 1.21744 1.19466 1.21837 0.85731 0.95741 0.95875 0.87245 0.88016 0.88265 0.74265 0.93570 0.92766 0.88383 0.90000 0.89931 0.90395 0.97511 0.97735 0.94388 0.95698 0.95154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 10.39 71.24 0.74 -0.94 16 2 C 0.50 10.88 7.94 87.66 0.70 11.58 16 3 O -0.61 -20.78 17.10 -3.03 -0.05 -20.84 16 4 N -0.72 -12.95 5.56 -463.05 -2.57 -15.52 16 5 C 0.12 2.86 5.55 86.38 0.48 3.34 16 6 C -0.10 -2.09 4.84 30.59 0.15 -1.94 16 7 C -0.09 -2.78 3.04 -9.40 -0.03 -2.81 16 8 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 9 C -0.12 -4.23 6.42 31.79 0.20 -4.02 16 10 C 0.18 9.11 5.37 86.73 0.47 9.58 16 11 N -0.63 -33.91 3.40 -691.89 -2.35 -36.26 16 12 C -0.25 -14.55 10.28 84.03 0.86 -13.68 16 13 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 14 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 15 N -0.95 -58.89 10.31 21.65 0.22 -58.67 16 16 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 17 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 18 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 C 0.13 5.56 6.04 86.85 0.52 6.08 16 21 H 0.11 0.39 7.91 -2.38 -0.02 0.37 16 22 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.42 4.15 8.31 -92.70 -0.77 3.38 16 25 H 0.05 1.36 7.59 -2.39 -0.02 1.34 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 1.62 8.03 -2.39 -0.02 1.60 16 29 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.08 2.40 8.04 -2.39 -0.02 2.38 16 31 H 0.01 0.38 7.38 -2.39 -0.02 0.36 16 32 H 0.00 0.25 7.50 -2.39 -0.02 0.23 16 33 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.03 1.01 7.96 -2.39 -0.02 1.00 16 35 H 0.03 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -78.13 288.41 2.13 -76.01 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: 0.29 Total: 2.29 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 4.56 Total: 3.72 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -4.70 Total: -110.45 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.84 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -78.13 2.13 -76.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732041567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.533 kcal (2) G-P(sol) polarization free energy of solvation -78.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds