Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99747 * 2 1 4 4 H 1.48495 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46776 * 299.99860 * 3 2 1 6 6 H 1.48503 * 109.46720 * 59.99638 * 3 2 1 7 7 C 1.37875 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08012 * 119.99489 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00382 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47526 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00289 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47007 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47116 * 179.97438 * 12 11 10 14 14 N 1.46897 * 109.47166 * 179.97438 * 13 12 11 15 15 C 1.46854 * 110.99665 * 170.00131 * 14 13 12 16 16 C 1.53037 * 109.51886 * 185.84309 * 15 14 13 17 17 C 1.53126 * 109.27801 * 300.81620 * 16 15 14 18 18 C 1.53124 * 109.15878 * 57.65645 * 17 16 15 19 19 C 1.46844 * 111.00090 * 294.20807 * 14 13 12 20 20 H 0.96996 * 120.00482 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47018 * 59.99537 * 9 7 2 22 22 H 1.08996 * 109.47428 * 299.99782 * 9 7 2 23 23 H 1.00899 * 110.99576 * 303.95812 * 10 9 7 24 24 H 1.08995 * 109.47105 * 59.99927 * 11 10 9 25 25 H 1.09004 * 109.47244 * 300.00095 * 11 10 9 26 26 H 1.08995 * 109.47303 * 59.99981 * 12 11 10 27 27 H 1.09003 * 109.47067 * 299.99308 * 12 11 10 28 28 H 1.09004 * 109.46918 * 59.99611 * 13 12 11 29 29 H 1.09003 * 109.46728 * 300.00185 * 13 12 11 30 30 H 1.08994 * 109.46310 * 65.82535 * 15 14 13 31 31 H 1.09004 * 109.45830 * 305.85222 * 15 14 13 32 32 H 1.09000 * 109.50480 * 180.88135 * 16 15 14 33 33 H 1.08992 * 109.50737 * 60.75564 * 16 15 14 34 34 H 1.08998 * 109.52297 * 177.56592 * 17 16 15 35 35 H 1.08999 * 109.51925 * 297.75795 * 17 16 15 36 36 H 1.08999 * 109.50059 * 62.28737 * 18 17 16 37 37 H 1.08993 * 109.49981 * 182.40384 * 18 17 16 38 38 H 1.09002 * 109.46133 * 294.17882 * 19 14 13 39 39 H 1.09002 * 109.46211 * 54.14407 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5056 -4.9070 -0.0001 12 6 2.5306 -6.0429 0.0006 13 6 1.8013 -7.3880 0.0006 14 7 2.7854 -8.4786 0.0006 15 6 2.1355 -9.7738 0.2387 16 6 3.2015 -10.8630 0.3769 17 6 4.0372 -10.9182 -0.9050 18 6 4.6637 -9.5437 -1.1560 19 6 3.5553 -8.4927 -1.2497 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5570 -0.8896 22 1 0.6243 -2.5568 0.8903 23 1 2.8407 -3.5485 -0.7808 24 1 0.8811 -4.9812 -0.8902 25 1 0.8804 -4.9818 0.8897 26 1 3.1548 -5.9685 0.8910 27 1 3.1561 -5.9684 -0.8890 28 1 1.1767 -7.4626 -0.8896 29 1 1.1761 -7.4622 0.8904 30 1 1.4805 -10.0109 -0.5996 31 1 1.5480 -9.7222 1.1554 32 1 2.7184 -11.8267 0.5380 33 1 3.8486 -10.6337 1.2234 34 1 4.8252 -11.6631 -0.7944 35 1 3.3971 -11.1857 -1.7458 36 1 5.3338 -9.2936 -0.3335 37 1 5.2252 -9.5649 -2.0900 38 1 2.8935 -8.7359 -2.0810 39 1 3.9990 -7.5107 -1.4142 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027745458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = -20.897065 kcal Electronic energy + Delta-G solvation = -15424.812803 eV Core-core repulsion = 12980.056093 eV Total energy + Delta-G solvation = -2444.756709 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.14729 -35.96915 -34.05357 -32.47504 -31.04522 -30.20027 -26.75211 -24.75995 -23.28211 -22.58809 -21.21406 -20.57565 -19.83505 -16.48491 -16.05484 -15.51678 -14.98843 -14.65266 -14.46970 -14.33901 -13.72341 -13.57298 -13.21845 -13.04799 -12.49434 -12.27256 -11.70068 -11.52738 -11.41855 -11.31614 -11.00088 -10.87638 -10.74633 -10.62344 -10.53974 -10.42105 -10.14082 -9.83517 -9.13327 -8.46362 -8.35652 -7.25171 -6.01268 -4.03089 3.32572 3.39548 3.45172 3.80368 4.45187 4.63028 4.67457 4.74536 4.99243 5.14811 5.21656 5.29697 5.34599 5.34744 5.44418 5.50749 5.61294 5.67472 5.69614 5.78003 5.83677 5.90511 5.94327 5.96765 6.07221 6.17338 6.20221 6.56568 6.64279 7.06511 7.07956 7.29049 7.45106 7.81669 8.15660 8.43467 8.65402 9.06803 9.61865 11.10012 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.069872 B = 0.003685 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.637225 B = 7596.363318 C = 7853.458388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.690 5.690 11 C 0.060 3.940 12 C -0.111 4.111 13 C 0.058 3.942 14 N -0.538 5.538 15 C 0.055 3.945 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.117 4.117 19 C 0.051 3.949 20 H 0.261 0.739 21 H -0.015 1.015 22 H 0.028 0.972 23 H 0.327 0.673 24 H 0.014 0.986 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.029 0.971 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.616 -20.907 -2.064 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.320 5.320 11 C -0.070 4.070 12 C -0.149 4.149 13 C -0.070 4.070 14 N -0.262 5.262 15 C -0.073 4.073 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.155 4.155 19 C -0.077 4.077 20 H 0.070 0.930 21 H 0.003 0.997 22 H 0.046 0.954 23 H 0.143 0.857 24 H 0.032 0.968 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.859 -20.688 -0.987 21.524 hybrid contribution -0.664 0.773 -1.603 1.900 sum 5.195 -19.916 -2.590 20.744 Atomic orbital electron populations 1.69977 1.06101 1.26655 1.51124 1.25008 0.94889 0.99417 0.95383 0.86419 0.80089 0.83296 0.77484 1.19611 1.21112 1.20980 1.21248 0.93588 0.90267 1.50054 0.91876 1.19559 0.90644 0.87479 0.95718 1.60649 1.21219 1.01332 1.48832 1.21831 0.95312 0.90360 0.99522 1.21579 0.98524 0.92009 1.02800 1.22102 0.93367 0.90928 1.00641 1.61913 1.26107 1.03241 1.34978 1.22076 0.95569 0.89219 1.00468 1.21584 0.97796 0.97602 0.98470 1.21585 0.99253 0.97322 0.97759 1.21589 0.97726 0.94268 1.01923 1.22153 0.95476 1.00082 0.89962 0.92988 0.99710 0.95434 0.85670 0.96784 0.91874 0.90471 0.92497 0.95194 0.90719 0.95263 0.90810 0.91816 0.91041 0.91992 0.92504 0.91012 0.91736 0.95277 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.92 9.32 -34.45 -0.32 -15.24 16 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 9 C 0.19 5.23 5.44 -4.98 -0.03 5.20 16 10 N -0.69 -15.39 6.49 -115.07 -0.75 -16.14 16 11 C 0.06 1.10 5.68 -3.83 -0.02 1.08 16 12 C -0.11 -1.65 5.40 -26.73 -0.14 -1.79 16 13 C 0.06 0.74 4.96 -3.82 -0.02 0.72 16 14 N -0.54 -6.38 4.66 -234.66 -1.09 -7.47 16 15 C 0.05 0.55 5.46 -3.83 -0.02 0.53 16 16 C -0.12 -1.00 6.09 -26.65 -0.16 -1.17 16 17 C -0.12 -1.00 6.00 -26.60 -0.16 -1.16 16 18 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16 19 C 0.05 0.56 5.29 -3.84 -0.02 0.54 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H -0.01 -0.43 8.14 -51.93 -0.42 -0.85 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.33 6.94 8.72 -39.29 -0.34 6.60 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 0.82 6.43 -51.93 -0.33 0.49 16 28 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 30 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.71 8.02 -51.93 -0.42 0.30 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.93 6.21 -51.93 -0.32 0.61 16 LS Contribution 307.95 15.07 4.64 4.64 Total: -1.00 -30.39 307.95 -9.93 -40.33 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.29 Total: -0.67 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.16 Total: -11.05 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -1.10 Total: -50.23 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.39 -9.93 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027745458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.430 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds