Wall clock time and date at job start Mon Mar 30 2020 02:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47542 * 2 1 4 4 C 1.53002 * 109.47075 * 120.00096 * 2 1 3 5 5 H 1.09000 * 109.46972 * 299.99853 * 4 2 1 6 6 C 1.52998 * 109.46997 * 59.99977 * 4 2 1 7 7 C 1.53002 * 109.46997 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47075 * 300.00023 * 7 6 4 9 9 H 1.09005 * 109.47197 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47176 * 299.99935 * 8 7 6 11 11 C 1.52998 * 109.47542 * 59.99904 * 8 7 6 12 12 C 1.53002 * 109.47014 * 300.00134 * 11 8 7 13 13 H 1.08995 * 109.46886 * 179.97438 * 12 11 8 14 14 O 1.42900 * 109.46887 * 299.99832 * 12 11 8 15 15 C 1.34926 * 116.99827 * 269.99907 * 14 12 11 16 16 H 1.07998 * 120.00154 * 0.02562 * 15 14 12 17 17 C 1.38638 * 120.00008 * 180.02562 * 15 14 12 18 18 N 1.31576 * 119.99635 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47366 * 59.99597 * 19 17 15 21 21 H 1.48503 * 109.47080 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.47200 * 299.99804 * 19 17 15 23 23 H 1.08997 * 109.46908 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47100 * 300.00129 * 1 2 3 25 25 H 1.08996 * 109.47151 * 59.99837 * 1 2 3 26 26 H 1.09000 * 109.47100 * 239.99871 * 2 1 3 27 27 H 1.08998 * 109.47798 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46990 * 300.00268 * 3 2 1 29 29 H 1.09000 * 109.47029 * 59.99827 * 3 2 1 30 30 H 1.08994 * 109.47023 * 299.99606 * 6 4 2 31 31 H 1.09000 * 109.47361 * 60.00114 * 6 4 2 32 32 H 1.09000 * 109.46972 * 59.99876 * 7 6 4 33 33 H 1.08997 * 109.47393 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47402 * 168.76941 * 10 8 7 35 35 H 1.09002 * 109.47196 * 288.76557 * 10 8 7 36 36 H 1.08994 * 109.47352 * 48.76280 * 10 8 7 37 37 H 1.09002 * 109.47576 * 179.97438 * 11 8 7 38 38 H 1.09000 * 109.47029 * 59.99827 * 11 8 7 39 39 H 0.97003 * 119.99596 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2492 7 6 2.0405 -2.8852 2.4981 8 6 3.5704 -2.8852 2.4975 9 1 3.9342 -3.3996 3.3870 10 6 4.0799 -3.6063 1.2479 11 6 4.0805 -1.4428 2.4975 12 6 3.5700 -0.7213 1.2485 13 1 3.9331 0.3064 1.2488 14 8 4.0459 -1.3948 0.0815 15 6 5.2314 -0.9894 -0.4191 16 1 5.7753 -0.1896 0.0613 17 6 5.7515 -1.5997 -1.5501 18 7 5.0886 -2.5738 -2.1356 19 14 7.3932 -1.0390 -2.2427 20 1 8.4516 -1.2222 -1.2173 21 1 7.7239 -1.8443 -3.4458 22 1 7.3088 0.3960 -2.6160 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.4400 -2.1637 1.2492 31 1 1.8933 -2.6776 0.3592 32 1 1.6775 -2.3715 3.3883 33 1 1.6775 -3.9130 2.4979 34 1 5.1514 -3.4362 1.1417 35 1 3.8894 -4.6753 1.3423 36 1 3.5621 -3.2211 0.3696 37 1 5.1706 -1.4428 2.4975 38 1 3.7176 -0.9290 3.3877 39 1 5.4526 -3.0011 -2.9267 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034618959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:25 Heat of formation + Delta-G solvation = -79.934721 kcal Electronic energy + Delta-G solvation = -17492.530534 eV Core-core repulsion = 15012.921009 eV Total energy + Delta-G solvation = -2479.609525 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79224 -36.91295 -36.29250 -33.63242 -31.29669 -30.63441 -27.91523 -27.30200 -26.38428 -23.37522 -22.82182 -20.49315 -19.96276 -19.12931 -17.03666 -16.84153 -15.88801 -15.69866 -15.36168 -14.70688 -14.45437 -14.20527 -14.06751 -13.73214 -13.35133 -13.14498 -12.96590 -12.87331 -12.81279 -12.70316 -12.29739 -12.13659 -11.98813 -11.73371 -11.66693 -11.47745 -11.30229 -11.05237 -10.90382 -10.60065 -10.32891 -9.74799 -8.01513 -5.61957 1.39937 1.44124 1.50289 2.39591 3.31179 3.77017 3.87563 4.00494 4.19544 4.28184 4.33554 4.38212 4.54527 4.63015 4.67086 4.77252 4.83720 4.85918 4.89526 5.04652 5.06206 5.12057 5.13806 5.17470 5.20500 5.24277 5.31782 5.32579 5.37831 5.55085 5.59157 5.60524 5.62809 5.77152 5.88142 6.17321 6.42441 7.44212 8.30201 9.21557 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.011276 C = 0.009104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.887205 B = 2482.496916 C = 3074.804629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.139 4.139 4 C -0.065 4.065 5 H 0.089 0.911 6 C -0.110 4.110 7 C -0.103 4.103 8 C -0.078 4.078 9 H 0.065 0.935 10 C -0.127 4.127 11 C -0.131 4.131 12 C 0.087 3.913 13 H 0.028 0.972 14 O -0.284 6.284 15 C -0.352 4.352 16 H 0.054 0.946 17 C -0.032 4.032 18 N -0.927 5.927 19 Si 0.977 3.023 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.272 1.272 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.014 0.986 35 H 0.025 0.975 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.689 3.813 8.750 12.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 C -0.196 4.196 4 C -0.083 4.083 5 H 0.107 0.893 6 C -0.147 4.147 7 C -0.140 4.140 8 C -0.097 4.097 9 H 0.084 0.916 10 C -0.184 4.184 11 C -0.168 4.168 12 C 0.028 3.972 13 H 0.046 0.954 14 O -0.199 6.199 15 C -0.432 4.432 16 H 0.071 0.929 17 C -0.226 4.226 18 N -0.573 5.573 19 Si 0.802 3.198 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.778 3.575 8.543 12.094 hybrid contribution 1.514 0.235 -0.678 1.676 sum -6.264 3.810 7.864 10.752 Atomic orbital electron populations 1.21814 0.93737 1.01864 1.02000 1.20974 0.96320 0.95715 0.97753 1.21780 1.00063 0.96053 1.01703 1.21197 0.92852 0.96364 0.97902 0.89302 1.21552 0.99841 0.95088 0.98205 1.21498 0.94017 1.00397 0.98110 1.20959 0.96378 0.95109 0.97223 0.91617 1.21842 0.99802 0.96797 0.99982 1.22060 0.99274 0.96986 0.98517 1.22100 0.94326 0.93713 0.87043 0.95391 1.85766 1.35687 1.57561 1.40937 1.21056 0.96941 1.16059 1.09097 0.92883 1.25670 1.01804 0.97643 0.97440 1.70134 1.39715 1.26055 1.21401 0.85232 0.78875 0.77938 0.77757 1.19915 1.21033 1.19723 0.92516 0.91211 0.92903 0.94534 0.94844 0.92938 0.91238 0.90636 0.94069 0.90356 0.91838 0.96685 0.95580 0.90288 0.94648 0.90273 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.84 71.98 0.64 -3.01 16 2 C -0.09 -3.08 2.36 -10.79 -0.03 -3.11 16 3 C -0.14 -4.49 8.84 71.98 0.64 -3.85 16 4 C -0.06 -2.21 1.61 -10.79 -0.02 -2.22 16 5 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 6 C -0.11 -3.66 4.52 30.59 0.14 -3.52 16 7 C -0.10 -3.07 5.45 30.59 0.17 -2.91 16 8 C -0.08 -2.79 3.19 -10.80 -0.03 -2.83 16 9 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 10 C -0.13 -5.72 7.81 71.98 0.56 -5.16 16 11 C -0.13 -4.85 5.27 30.59 0.16 -4.69 16 12 C 0.09 3.60 2.04 30.60 0.06 3.67 16 13 H 0.03 1.20 6.09 -2.39 -0.01 1.19 16 14 O -0.28 -14.95 4.54 -81.95 -0.37 -15.32 16 15 C -0.35 -20.03 9.77 67.92 0.66 -19.36 16 16 H 0.05 2.95 7.65 -2.91 -0.02 2.92 16 17 C -0.03 -1.87 5.49 84.83 0.47 -1.40 16 18 N -0.93 -57.42 13.67 21.61 0.30 -57.13 16 19 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H 0.06 1.48 6.43 -2.39 -0.02 1.46 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.63 7.68 -2.39 -0.02 1.61 16 27 H 0.03 1.25 6.43 -2.39 -0.02 1.24 16 28 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 2.11 6.43 -2.39 -0.02 2.09 16 31 H 0.04 1.74 5.94 -2.39 -0.01 1.72 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 35 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 4.11 3.79 -2.39 -0.01 4.10 16 37 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -64.52 290.67 6.36 -58.16 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.99 Total: 14.71 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 3.42 Total: -48.40 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.30 Total: -57.13 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.37 Total: -15.32 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -64.52 6.36 -58.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034618959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.774 kcal (2) G-P(sol) polarization free energy of solvation -64.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds