Wall clock time and date at job start Mon Mar 30 2020 02:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00146 * 2 1 4 4 H 1.48496 * 109.46781 * 270.00089 * 3 2 1 5 5 H 1.48508 * 109.46980 * 29.99883 * 3 2 1 6 6 H 1.48495 * 109.47084 * 149.99779 * 3 2 1 7 7 C 1.37876 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00336 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99938 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47010 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46769 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.52992 * 109.47482 * 180.02562 * 13 12 11 15 15 N 1.46901 * 109.47859 * 179.97438 * 14 13 12 16 16 C 1.48533 * 110.99670 * 52.60024 * 15 14 13 17 17 C 1.54936 * 103.22827 * 159.72645 * 16 15 14 18 18 C 1.54602 * 102.91755 * 322.58844 * 17 16 15 19 19 C 1.47895 * 111.00585 * 169.99973 * 15 14 13 20 20 H 0.97003 * 120.00204 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.47061 * 60.00581 * 9 7 2 22 22 H 1.08995 * 109.47155 * 299.99819 * 9 7 2 23 23 H 1.00898 * 110.99995 * 56.04971 * 10 9 7 24 24 H 1.09001 * 109.46874 * 60.00179 * 11 10 9 25 25 H 1.08992 * 109.47407 * 300.00197 * 11 10 9 26 26 H 1.09002 * 109.47398 * 300.00295 * 12 11 10 27 27 H 1.09001 * 109.47194 * 60.00475 * 12 11 10 28 28 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 29 29 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 30 30 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 31 31 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 32 32 H 1.09002 * 110.67270 * 278.16471 * 16 15 14 33 33 H 1.08998 * 110.66667 * 41.29259 * 16 15 14 34 34 H 1.09002 * 110.72666 * 204.23420 * 17 16 15 35 35 H 1.08998 * 110.72369 * 80.94172 * 17 16 15 36 36 H 1.09001 * 110.30688 * 263.03605 * 18 17 16 37 37 H 1.08996 * 110.30747 * 140.87557 * 18 17 16 38 38 H 1.08994 * 109.91810 * 333.51090 * 19 15 14 39 39 H 1.08999 * 109.91451 * 94.60787 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6158 0.0015 11 6 1.5053 -4.9071 0.0020 12 6 2.5302 -6.0430 0.0011 13 6 1.8009 -7.3880 0.0009 14 6 2.8257 -8.5239 0.0007 15 7 2.1255 -9.8154 0.0012 16 6 1.1309 -9.8819 -1.1000 17 6 0.8996 -11.4037 -1.2773 18 6 2.3093 -11.9963 -1.0497 19 6 3.0680 -10.9295 -0.2388 20 1 -0.4850 0.8400 -0.0004 21 1 0.6240 -2.5575 -0.8881 22 1 0.6247 -2.5563 0.8919 23 1 2.8410 -3.5484 0.7823 24 1 0.8800 -4.9816 -0.8878 25 1 0.8807 -4.9814 0.8921 26 1 3.1544 -5.9685 -0.8894 27 1 3.1558 -5.9687 0.8906 28 1 1.1764 -7.4627 0.8912 29 1 1.1755 -7.4622 -0.8887 30 1 3.4505 -8.4494 -0.8894 31 1 3.4506 -8.4497 0.8906 32 1 0.2052 -9.3830 -0.8132 33 1 1.5374 -9.4458 -2.0124 34 1 0.5460 -11.6254 -2.2843 35 1 0.1991 -11.7769 -0.5303 36 1 2.8055 -12.1696 -2.0046 37 1 2.2422 -12.9252 -0.4834 38 1 3.9274 -10.5731 -0.8067 39 1 3.3988 -11.3473 0.7120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041620079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:55 Heat of formation + Delta-G solvation = -39.184359 kcal Electronic energy + Delta-G solvation = -15146.873477 eV Core-core repulsion = 12701.323771 eV Total energy + Delta-G solvation = -2445.549706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.95606 -37.73108 -35.56755 -34.29785 -32.07740 -29.88274 -29.12746 -26.93119 -24.22947 -23.17436 -22.45360 -21.63825 -21.13450 -18.57558 -17.15035 -16.91015 -16.73722 -16.58590 -15.79970 -15.35270 -14.90332 -14.73528 -14.23987 -13.99591 -13.77554 -13.44128 -13.13074 -12.91447 -12.66384 -12.58829 -12.30880 -12.28471 -12.14142 -12.02515 -11.92214 -11.68619 -11.48370 -11.38583 -11.21983 -10.67808 -9.38330 -9.15790 -8.24320 -6.36372 1.40768 1.43196 1.54546 2.39277 3.00231 3.08751 3.54509 3.76085 3.79979 3.99424 4.05554 4.15416 4.34202 4.38039 4.44778 4.55297 4.60537 4.70003 4.77049 4.79647 4.88734 4.96532 4.98382 5.00832 5.06940 5.07953 5.19323 5.24613 5.31530 5.34382 5.40245 5.60235 5.96080 5.99802 6.09129 6.42274 6.70503 6.87180 7.34927 8.87628 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.085007 B = 0.003298 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.307040 B = 8487.669746 C = 8693.089610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.206 3.794 10 N -0.692 5.692 11 C 0.059 3.941 12 C -0.100 4.100 13 C -0.107 4.107 14 C 0.053 3.947 15 N -0.534 5.534 16 C 0.028 3.972 17 C -0.123 4.123 18 C -0.128 4.128 19 C 0.030 3.970 20 H 0.266 0.734 21 H -0.002 1.002 22 H -0.040 1.040 23 H 0.336 0.664 24 H 0.053 0.947 25 H 0.015 0.985 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.075 -22.669 -1.352 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.078 3.922 10 N -0.323 5.323 11 C -0.070 4.070 12 C -0.138 4.138 13 C -0.146 4.146 14 C -0.075 4.075 15 N -0.259 5.259 16 C -0.100 4.100 17 C -0.161 4.161 18 C -0.166 4.166 19 C -0.098 4.098 20 H 0.075 0.925 21 H 0.016 0.984 22 H -0.022 1.022 23 H 0.153 0.847 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.768 -22.601 -1.522 23.149 hybrid contribution 0.026 1.158 0.142 1.167 sum 4.794 -21.443 -1.380 22.015 Atomic orbital electron populations 1.70097 1.07917 1.28123 1.51426 1.26019 0.95845 1.03605 0.94444 0.85270 0.78498 0.77618 0.78529 1.19760 1.20563 1.18585 1.21567 0.93886 0.91405 1.50818 0.91599 1.19221 0.90719 0.89139 0.93084 1.60557 1.20577 1.01794 1.49324 1.21959 0.96292 0.89675 0.99098 1.21391 0.97437 0.92376 1.02599 1.21493 0.98058 0.92681 1.02336 1.22241 0.95699 0.88415 1.01108 1.64811 1.14213 1.02982 1.43871 1.23295 0.96498 0.97687 0.92495 1.22504 0.97396 0.93706 1.02479 1.22408 0.95446 0.98491 1.00305 1.22946 0.94555 0.91989 1.00273 0.92526 0.98387 1.02247 0.84734 0.92812 0.96725 0.91534 0.91447 0.91779 0.91980 0.94506 0.90393 0.90433 0.93917 0.89890 0.90827 0.90736 0.90042 0.93720 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.72 13.29 21.45 0.28 -57.44 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.98 44.86 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -31.63 9.32 25.60 0.24 -31.39 16 8 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 9 C 0.21 11.55 5.44 85.56 0.47 12.01 16 10 N -0.69 -31.18 6.49 -517.92 -3.36 -34.54 16 11 C 0.06 2.19 5.69 86.30 0.49 2.68 16 12 C -0.10 -2.77 5.47 30.59 0.17 -2.61 16 13 C -0.11 -2.55 4.87 30.59 0.15 -2.40 16 14 C 0.05 1.12 5.03 86.30 0.43 1.56 16 15 N -0.53 -10.88 5.40 -883.07 -4.76 -15.64 16 16 C 0.03 0.52 5.10 86.65 0.44 0.96 16 17 C -0.12 -1.76 7.06 31.80 0.22 -1.54 16 18 C -0.13 -1.68 6.93 31.47 0.22 -1.46 16 19 C 0.03 0.49 6.69 86.45 0.58 1.07 16 20 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 21 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 22 H -0.04 -2.40 8.14 -2.39 -0.02 -2.42 16 23 H 0.34 14.18 8.72 -89.70 -0.78 13.39 16 24 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.48 6.80 -2.39 -0.02 1.46 16 30 H 0.04 0.76 7.81 -2.39 -0.02 0.74 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.51 7.66 -2.39 -0.02 1.49 16 33 H 0.04 0.81 8.00 -2.39 -0.02 0.79 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.04 0.72 7.57 -2.39 -0.02 0.70 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -65.09 311.62 -1.74 -66.83 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.20 Total: 14.62 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 3.87 Total: -20.72 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -7.84 Total: -107.62 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.09 -1.74 -66.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041620079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.647 kcal (2) G-P(sol) polarization free energy of solvation -65.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds