Wall clock time and date at job start Mon Mar 30 2020 02:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47321 * 240.00365 * 3 2 1 5 5 H 1.48500 * 109.46987 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47199 * 120.00209 * 3 2 1 7 7 C 1.37880 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00164 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47337 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47020 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99935 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47277 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.46850 * 180.02562 * 13 12 11 15 15 C 1.46845 * 111.00565 * 45.79157 * 14 13 12 16 16 C 1.53034 * 109.52676 * 185.84030 * 15 14 13 17 17 C 1.53126 * 109.27454 * 300.81918 * 16 15 14 18 18 C 1.53119 * 109.16048 * 57.65518 * 17 16 15 19 19 C 1.46850 * 110.99813 * 170.00223 * 14 13 12 20 20 H 0.97001 * 120.00314 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.47031 * 60.00034 * 9 7 2 22 22 H 1.09003 * 109.47533 * 300.00563 * 9 7 2 23 23 H 1.08993 * 109.47178 * 60.00415 * 10 9 7 24 24 H 1.09000 * 109.46771 * 299.99693 * 10 9 7 25 25 H 1.00900 * 111.00106 * 56.04950 * 11 10 9 26 26 H 1.09006 * 109.46860 * 60.00105 * 12 11 10 27 27 H 1.08999 * 109.47090 * 300.00457 * 12 11 10 28 28 H 1.08995 * 109.46637 * 60.00046 * 13 12 11 29 29 H 1.09001 * 109.46762 * 300.00003 * 13 12 11 30 30 H 1.08995 * 109.46315 * 65.81881 * 15 14 13 31 31 H 1.09005 * 109.45975 * 305.85394 * 15 14 13 32 32 H 1.08997 * 109.50792 * 180.88024 * 16 15 14 33 33 H 1.09006 * 109.50471 * 60.75677 * 16 15 14 34 34 H 1.08999 * 109.52028 * 177.55723 * 17 16 15 35 35 H 1.08993 * 109.52259 * 297.74866 * 17 16 15 36 36 H 1.09004 * 109.50440 * 62.28501 * 18 17 16 37 37 H 1.09003 * 109.50154 * 182.40625 * 18 17 16 38 38 H 1.09005 * 109.46186 * 54.13967 * 19 14 13 39 39 H 1.08998 * 109.46012 * 294.17361 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 2.4353 -6.0759 -0.0018 13 6 1.6352 -7.3801 -0.0018 14 7 2.5597 -8.5216 -0.0018 15 6 3.6339 -8.3291 0.9808 16 6 4.6541 -9.4624 0.8521 17 6 3.9533 -10.8029 1.0903 18 6 2.8084 -10.9570 0.0853 19 6 1.8417 -9.7803 0.2362 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 2.8719 -3.6043 0.8894 24 1 2.8719 -3.6043 -0.8906 25 1 0.8747 -4.9841 -0.7828 26 1 3.0633 -6.0353 0.8883 27 1 3.0633 -6.0344 -0.8917 28 1 1.0070 -7.4208 -0.8915 29 1 1.0076 -7.4212 0.8885 30 1 3.2117 -8.3328 1.9857 31 1 4.1267 -7.3742 0.7977 32 1 5.4430 -9.3277 1.5920 33 1 5.0868 -9.4507 -0.1483 34 1 4.6670 -11.6158 0.9569 35 1 3.5541 -10.8301 2.1041 36 1 3.2121 -10.9688 -0.9272 37 1 2.2787 -11.8901 0.2774 38 1 1.0329 -9.8795 -0.4877 39 1 1.4280 -9.7772 1.2446 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042226332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:06 Heat of formation + Delta-G solvation = -17.588565 kcal Electronic energy + Delta-G solvation = -15469.604265 eV Core-core repulsion = 13024.991023 eV Total energy + Delta-G solvation = -2444.613242 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.21664 -36.16853 -33.88565 -32.66461 -31.06195 -29.85341 -27.14646 -24.56238 -23.54952 -22.91687 -21.00139 -20.39834 -19.76014 -16.46923 -16.09255 -15.66519 -15.14692 -14.62638 -14.44726 -14.21030 -13.84040 -13.73185 -13.17925 -12.90248 -12.71658 -12.23525 -12.01204 -11.56254 -11.38812 -11.23645 -11.00823 -10.91277 -10.83582 -10.55108 -10.50388 -10.25775 -9.96298 -9.36210 -9.14986 -8.35927 -8.33511 -7.81447 -5.98384 -4.01085 3.34589 3.38714 3.41194 3.76314 4.45657 4.61652 4.68031 4.73521 4.90803 5.08707 5.17353 5.28901 5.34004 5.37364 5.39415 5.45943 5.57726 5.68286 5.72570 5.75481 5.81088 5.93416 6.00433 6.08696 6.11487 6.20872 6.35298 6.44078 6.98192 7.01918 7.04536 7.48962 7.74022 7.83906 7.97184 8.09640 8.44935 9.05975 9.62538 11.13087 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.070431 B = 0.003737 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.459280 B = 7491.291753 C = 7788.667284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.693 5.693 12 C 0.055 3.945 13 C 0.058 3.942 14 N -0.538 5.538 15 C 0.047 3.953 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.116 4.116 19 C 0.056 3.944 20 H 0.261 0.739 21 H 0.014 0.986 22 H 0.025 0.975 23 H 0.057 0.943 24 H 0.016 0.984 25 H 0.336 0.664 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.004 -20.644 0.805 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.061 4.061 11 N -0.324 5.324 12 C -0.074 4.074 13 C -0.070 4.070 14 N -0.264 5.264 15 C -0.081 4.081 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.073 4.073 20 H 0.071 0.929 21 H 0.032 0.968 22 H 0.043 0.957 23 H 0.076 0.924 24 H 0.034 0.966 25 H 0.153 0.847 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.979 -20.552 1.033 21.429 hybrid contribution 0.366 1.043 -0.109 1.110 sum 6.345 -19.510 0.924 20.536 Atomic orbital electron populations 1.69961 1.06045 1.26712 1.50573 1.25005 0.94850 0.99222 0.95286 0.86638 0.79558 0.83069 0.78604 1.20265 1.21263 1.20219 1.21147 0.92965 0.91043 1.51006 0.92797 1.19067 0.94024 0.90411 0.97722 1.22147 0.96968 0.88343 0.98636 1.60575 1.19911 1.02182 1.49730 1.22047 0.94866 0.89990 1.00542 1.22077 0.94348 0.89274 1.01312 1.61969 1.12490 1.02092 1.49834 1.22227 0.93041 0.99446 0.93388 1.21601 0.97463 0.94155 1.02304 1.21585 0.97727 0.97542 0.99091 1.21580 0.96549 0.97044 1.00235 1.22070 0.96065 0.89511 0.99605 0.92925 0.96766 0.95680 0.92441 0.96589 0.84685 0.91275 0.95041 0.90833 0.93963 0.94910 0.89905 0.91679 0.91162 0.92005 0.92389 0.91146 0.91759 0.90843 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.67 5.23 -27.89 -0.15 0.52 16 10 C 0.07 1.46 5.62 -3.82 -0.02 1.44 16 11 N -0.69 -12.76 6.50 -113.78 -0.74 -13.50 16 12 C 0.06 0.84 4.94 -3.82 -0.02 0.82 16 13 C 0.06 0.76 5.53 -3.82 -0.02 0.74 16 14 N -0.54 -6.43 4.81 -234.67 -1.13 -7.55 16 15 C 0.05 0.53 4.85 -3.84 -0.02 0.51 16 16 C -0.12 -1.09 6.09 -26.65 -0.16 -1.25 16 17 C -0.12 -1.02 6.00 -26.60 -0.16 -1.17 16 18 C -0.12 -1.00 6.09 -26.65 -0.16 -1.16 16 19 C 0.06 0.56 5.42 -3.83 -0.02 0.54 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 22 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.34 5.93 8.73 -39.29 -0.34 5.59 16 26 H 0.07 1.05 6.21 -51.93 -0.32 0.73 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.98 5.81 -51.93 -0.30 0.68 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -30.13 306.80 -9.94 -40.07 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.27 Total: -1.15 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -1.14 Total: -12.84 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -1.13 Total: -47.57 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.13 -9.94 -40.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042226332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.481 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds