Wall clock time and date at job start Mon Mar 30 2020 02:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00156 * 2 1 4 4 H 1.48498 * 109.47321 * 240.00365 * 3 2 1 5 5 H 1.48500 * 109.46987 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47199 * 120.00209 * 3 2 1 7 7 C 1.37880 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00164 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47337 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47020 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99935 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47277 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.46850 * 180.02562 * 13 12 11 15 15 C 1.46845 * 111.00565 * 45.79157 * 14 13 12 16 16 C 1.53034 * 109.52676 * 185.84030 * 15 14 13 17 17 C 1.53126 * 109.27454 * 300.81918 * 16 15 14 18 18 C 1.53119 * 109.16048 * 57.65518 * 17 16 15 19 19 C 1.46850 * 110.99813 * 170.00223 * 14 13 12 20 20 H 0.97001 * 120.00314 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.47031 * 60.00034 * 9 7 2 22 22 H 1.09003 * 109.47533 * 300.00563 * 9 7 2 23 23 H 1.08993 * 109.47178 * 60.00415 * 10 9 7 24 24 H 1.09000 * 109.46771 * 299.99693 * 10 9 7 25 25 H 1.00900 * 111.00106 * 56.04950 * 11 10 9 26 26 H 1.09006 * 109.46860 * 60.00105 * 12 11 10 27 27 H 1.08999 * 109.47090 * 300.00457 * 12 11 10 28 28 H 1.08995 * 109.46637 * 60.00046 * 13 12 11 29 29 H 1.09001 * 109.46762 * 300.00003 * 13 12 11 30 30 H 1.08995 * 109.46315 * 65.81881 * 15 14 13 31 31 H 1.09005 * 109.45975 * 305.85394 * 15 14 13 32 32 H 1.08997 * 109.50792 * 180.88024 * 16 15 14 33 33 H 1.09006 * 109.50471 * 60.75677 * 16 15 14 34 34 H 1.08999 * 109.52028 * 177.55723 * 17 16 15 35 35 H 1.08993 * 109.52259 * 297.74866 * 17 16 15 36 36 H 1.09004 * 109.50440 * 62.28501 * 18 17 16 37 37 H 1.09003 * 109.50154 * 182.40625 * 18 17 16 38 38 H 1.09005 * 109.46186 * 54.13967 * 19 14 13 39 39 H 1.08998 * 109.46012 * 294.17361 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 2.4353 -6.0759 -0.0018 13 6 1.6352 -7.3801 -0.0018 14 7 2.5597 -8.5216 -0.0018 15 6 3.6339 -8.3291 0.9808 16 6 4.6541 -9.4624 0.8521 17 6 3.9533 -10.8029 1.0903 18 6 2.8084 -10.9570 0.0853 19 6 1.8417 -9.7803 0.2362 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 2.8719 -3.6043 0.8894 24 1 2.8719 -3.6043 -0.8906 25 1 0.8747 -4.9841 -0.7828 26 1 3.0633 -6.0353 0.8883 27 1 3.0633 -6.0344 -0.8917 28 1 1.0070 -7.4208 -0.8915 29 1 1.0076 -7.4212 0.8885 30 1 3.2117 -8.3328 1.9857 31 1 4.1267 -7.3742 0.7977 32 1 5.4430 -9.3277 1.5920 33 1 5.0868 -9.4507 -0.1483 34 1 4.6670 -11.6158 0.9569 35 1 3.5541 -10.8301 2.1041 36 1 3.2121 -10.9688 -0.9272 37 1 2.2787 -11.8901 0.2774 38 1 1.0329 -9.8795 -0.4877 39 1 1.4280 -9.7772 1.2446 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042226332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:05 Heat of formation + Delta-G solvation = -38.080560 kcal Electronic energy + Delta-G solvation = -15470.492865 eV Core-core repulsion = 13024.991023 eV Total energy + Delta-G solvation = -2445.501842 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.10965 -37.63403 -35.40594 -34.30062 -31.96073 -31.48387 -28.60532 -26.07631 -24.84159 -23.85723 -22.50836 -21.87308 -20.57365 -18.52797 -17.22013 -17.05458 -16.52544 -16.04925 -15.40148 -15.35721 -15.17282 -14.82612 -14.40382 -14.23959 -14.14249 -13.62279 -13.17297 -13.05313 -12.91758 -12.71878 -12.39202 -12.23110 -12.11393 -11.88672 -11.57597 -11.42789 -11.33048 -11.24503 -11.07176 -10.56775 -9.36606 -9.28672 -8.20974 -6.32939 1.40349 1.43902 1.51870 2.40092 2.77645 3.12312 3.52397 3.83836 3.90655 4.03484 4.10234 4.18202 4.33572 4.46782 4.52010 4.53009 4.57174 4.62761 4.67592 4.81737 4.90598 4.94911 4.98389 5.04828 5.06478 5.09833 5.23266 5.29551 5.42564 5.48493 5.64939 5.76063 6.02822 6.10927 6.16564 6.25748 6.50655 6.83937 7.36394 8.91123 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.070431 B = 0.003737 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.459280 B = 7491.291753 C = 7788.667284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.031 3.969 10 C 0.085 3.915 11 N -0.698 5.698 12 C 0.062 3.938 13 C 0.067 3.933 14 N -0.544 5.544 15 C 0.044 3.956 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.113 4.113 19 C 0.052 3.948 20 H 0.265 0.735 21 H -0.007 1.007 22 H -0.006 1.006 23 H 0.057 0.943 24 H 0.020 0.980 25 H 0.340 0.660 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.331 -21.357 0.762 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.044 4.044 11 N -0.330 5.330 12 C -0.067 4.067 13 C -0.061 4.061 14 N -0.269 5.269 15 C -0.084 4.084 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.151 4.151 19 C -0.076 4.076 20 H 0.073 0.927 21 H 0.011 0.989 22 H 0.013 0.987 23 H 0.076 0.924 24 H 0.038 0.962 25 H 0.158 0.842 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 7.317 -21.295 0.989 22.539 hybrid contribution -0.083 1.207 -0.090 1.213 sum 7.234 -20.088 0.899 21.369 Atomic orbital electron populations 1.70099 1.07863 1.27948 1.51263 1.25998 0.95795 1.03454 0.94525 0.85452 0.78233 0.77818 0.79239 1.19062 1.20733 1.19120 1.21593 0.93580 0.92261 1.51206 0.92094 1.18923 0.94300 0.92251 0.95129 1.21769 0.95612 0.88229 0.98756 1.60477 1.20426 1.01897 1.50162 1.22034 0.94484 0.89624 1.00558 1.21924 0.94186 0.88878 1.01150 1.62016 1.12468 1.02216 1.50231 1.22269 0.93247 0.99984 0.92890 1.21593 0.97206 0.93971 1.02472 1.21594 0.97882 0.97350 0.99004 1.21577 0.96384 0.96945 1.00146 1.22173 0.96601 0.89217 0.99573 0.92673 0.98901 0.98733 0.92443 0.96217 0.84221 0.91221 0.94936 0.90411 0.94751 0.95449 0.90828 0.90563 0.91524 0.90490 0.92343 0.91461 0.90034 0.90434 0.95254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.72 5.23 29.84 0.16 1.87 16 10 C 0.09 3.71 5.62 86.30 0.49 4.20 16 11 N -0.70 -25.67 6.50 -513.87 -3.34 -29.02 16 12 C 0.06 1.85 4.94 86.30 0.43 2.28 16 13 C 0.07 1.71 5.53 86.30 0.48 2.19 16 14 N -0.54 -12.37 4.81 -896.37 -4.31 -16.68 16 15 C 0.04 0.94 4.85 86.33 0.42 1.36 16 16 C -0.11 -1.94 6.09 30.65 0.19 -1.75 16 17 C -0.12 -1.74 6.00 30.68 0.18 -1.56 16 18 C -0.11 -1.69 6.09 30.65 0.19 -1.50 16 19 C 0.05 0.98 5.42 86.32 0.47 1.45 16 20 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 21 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 22 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 23 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.34 12.04 8.73 -89.69 -0.78 11.26 16 26 H 0.07 2.08 6.21 -2.38 -0.01 2.06 16 27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.03 0.93 8.08 -2.39 -0.02 0.91 16 30 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 1.69 5.81 -2.38 -0.01 1.67 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.38 8.12 -2.38 -0.02 1.37 16 39 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -63.94 306.80 -1.45 -65.39 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.21 Total: 13.59 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 3.68 Total: -22.62 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -7.36 Total: -103.02 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.94 -1.45 -65.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042226332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.310 kcal (2) G-P(sol) polarization free energy of solvation -63.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds