Wall clock time and date at job start Mon Mar 30 2020 02:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46848 * 110.99510 * 294.21467 * 12 11 10 14 14 C 1.53048 * 109.52064 * 174.15537 * 13 12 11 15 15 C 1.53118 * 109.27745 * 59.17773 * 14 13 12 16 16 C 1.52997 * 109.57543 * 182.41065 * 15 14 13 17 17 N 1.46898 * 109.47087 * 294.71486 * 16 15 14 18 18 C 1.53120 * 109.16026 * 302.34502 * 15 14 13 19 19 C 1.46844 * 111.00526 * 170.00090 * 12 11 10 20 20 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 26 26 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 27 27 H 1.08996 * 109.46339 * 294.16557 * 13 12 11 28 28 H 1.08994 * 109.46869 * 54.14232 * 13 12 11 29 29 H 1.08998 * 109.49998 * 299.23732 * 14 13 12 30 30 H 1.08994 * 109.50211 * 179.11499 * 14 13 12 31 31 H 1.09002 * 109.52451 * 62.24612 * 15 14 13 32 32 H 1.09003 * 109.47495 * 54.71055 * 16 15 14 33 33 H 1.08998 * 109.47327 * 174.71638 * 16 15 14 34 34 H 1.00905 * 111.00407 * 56.04255 * 17 16 15 35 35 H 1.00895 * 111.00372 * 179.97438 * 17 16 15 36 36 H 1.09004 * 109.50479 * 297.71302 * 18 15 14 37 37 H 1.08998 * 109.50625 * 177.59615 * 18 15 14 38 38 H 1.09003 * 109.46077 * 305.85847 * 19 12 11 39 39 H 1.08995 * 109.45945 * 65.83669 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 7 6.0410 -4.0218 0.0004 13 6 5.6863 -4.7048 1.2510 14 6 6.0819 -6.1804 1.1578 15 6 7.5888 -6.2849 0.9069 16 6 7.9820 -7.7554 0.7527 17 7 7.7571 -8.4581 2.0230 18 6 7.9387 -5.5245 -0.3753 19 6 7.4893 -4.0681 -0.2377 20 1 -0.4850 0.8401 -0.0004 21 1 3.8751 -0.6798 -0.8895 22 1 3.8745 -0.6810 0.8905 23 1 3.6577 -3.1507 0.8897 24 1 3.6584 -3.1504 -0.8902 25 1 5.9147 -2.1229 -0.8901 26 1 5.9147 -2.1231 0.8899 27 1 6.2156 -4.2388 2.0821 28 1 4.6117 -4.6267 1.4154 29 1 5.5426 -6.6504 0.3355 30 1 5.8328 -6.6836 2.0920 31 1 8.1291 -5.8494 1.7475 32 1 7.3755 -8.2138 -0.0284 33 1 9.0355 -7.8233 0.4816 34 1 6.8011 -8.3552 2.3289 35 1 8.0091 -9.4322 1.9469 36 1 7.4286 -5.9844 -1.2218 37 1 9.0161 -5.5592 -0.5365 38 1 7.7241 -3.5273 -1.1545 39 1 8.0100 -3.6052 0.6005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044514281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:40 Heat of formation + Delta-G solvation = -23.782663 kcal Electronic energy + Delta-G solvation = -15822.211083 eV Core-core repulsion = 13377.329244 eV Total energy + Delta-G solvation = -2444.881838 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.26462 -36.11022 -33.92839 -32.38401 -30.86731 -30.79253 -27.35283 -25.20262 -23.37827 -22.34556 -21.15365 -19.83975 -19.66559 -16.71331 -16.31982 -15.63727 -15.10978 -14.94804 -14.28052 -14.18714 -13.99011 -13.80723 -13.18783 -12.84679 -12.63609 -12.16289 -12.09686 -11.81104 -11.43837 -11.17879 -10.99415 -10.82212 -10.67529 -10.38922 -10.29026 -9.85192 -9.61397 -9.50964 -9.13186 -8.95378 -8.50485 -8.06647 -6.01039 -3.98491 3.32791 3.39874 3.43905 4.10595 4.28864 4.48119 4.67377 4.72134 4.87175 5.21016 5.27726 5.33038 5.35592 5.43148 5.51443 5.58743 5.64100 5.75321 5.83114 5.85515 5.92367 6.04800 6.12946 6.13532 6.22443 6.36228 6.59806 6.62788 6.87066 6.96168 7.15366 7.31781 7.34254 7.42427 7.51456 7.84083 8.58653 9.04661 9.61813 11.12612 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056319 B = 0.004591 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.046458 B = 6096.884309 C = 6410.185520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.097 4.097 11 C 0.054 3.946 12 N -0.538 5.538 13 C 0.053 3.947 14 C -0.112 4.112 15 C -0.089 4.089 16 C 0.067 3.933 17 N -0.854 5.854 18 C -0.109 4.109 19 C 0.055 3.945 20 H 0.262 0.738 21 H 0.011 0.989 22 H 0.013 0.987 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.027 0.973 27 H 0.029 0.971 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.341 0.659 35 H 0.338 0.662 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.916 -13.234 1.356 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.135 4.135 11 C -0.073 4.073 12 N -0.263 5.263 13 C -0.075 4.075 14 C -0.150 4.150 15 C -0.108 4.108 16 C -0.064 4.064 17 N -0.384 5.384 18 C -0.148 4.148 19 C -0.073 4.073 20 H 0.072 0.928 21 H 0.029 0.971 22 H 0.031 0.969 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 17.081 -12.858 1.270 21.417 hybrid contribution 0.049 0.823 0.101 0.831 sum 17.130 -12.035 1.371 20.980 Atomic orbital electron populations 1.69921 1.06296 1.26800 1.51433 1.25043 0.94733 0.99167 0.94667 0.86764 0.80322 0.83633 0.78471 1.20309 1.21445 1.19094 1.21155 0.89539 0.94431 1.50435 0.91052 1.19556 0.97138 0.92404 0.96051 1.21476 0.91039 0.99438 1.01561 1.22298 0.97988 0.87004 1.00053 1.61969 1.12594 1.16897 1.34800 1.22110 1.01654 0.93622 0.90104 1.21648 0.95208 0.96564 1.01531 1.21241 0.96643 0.94450 0.98417 1.21824 1.00512 0.94057 0.89988 1.58768 1.30097 1.17737 1.31767 1.21590 1.00154 0.95241 0.97789 1.22045 0.88427 0.96414 1.00400 0.92804 0.97098 0.96903 0.92865 0.92046 0.91294 0.95484 0.95294 0.89819 0.91349 0.91756 0.90817 0.95446 0.91310 0.84518 0.84968 0.91144 0.91840 0.90911 0.95359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.39 13.96 55.43 0.77 -27.61 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.99 5.08 -26.74 -0.14 -2.12 16 11 C 0.05 0.91 4.96 -3.83 -0.02 0.89 16 12 N -0.54 -7.99 4.66 -234.67 -1.09 -9.08 16 13 C 0.05 0.73 5.29 -3.83 -0.02 0.71 16 14 C -0.11 -1.25 5.10 -26.65 -0.14 -1.38 16 15 C -0.09 -0.90 2.46 -90.50 -0.22 -1.13 16 16 C 0.07 0.59 6.25 -3.83 -0.02 0.56 16 17 N -0.85 -7.07 9.62 -10.37 -0.10 -7.17 16 18 C -0.11 -1.13 5.38 -26.65 -0.14 -1.27 16 19 C 0.06 0.69 5.46 -3.83 -0.02 0.66 16 20 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 21 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 22 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 23 H 0.05 1.09 6.43 -51.93 -0.33 0.75 16 24 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.07 1.14 7.99 -51.93 -0.41 0.72 16 26 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 1.26 6.21 -51.93 -0.32 0.94 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.64 6.81 -51.93 -0.35 0.29 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.34 2.67 7.32 -39.29 -0.29 2.39 16 35 H 0.34 2.20 9.08 -39.29 -0.36 1.84 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.87 8.02 -51.93 -0.42 0.45 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -30.97 299.93 -8.90 -39.86 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.06 Total: -0.83 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.26 Total: -17.12 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.42 Total: -43.87 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.97 -8.90 -39.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044514281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.081 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds