Wall clock time and date at job start Mon Mar 30 2020 02:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00146 * 2 1 4 4 H 1.48504 * 109.46797 * 269.99902 * 3 2 1 5 5 H 1.48494 * 109.46978 * 29.99805 * 3 2 1 6 6 H 1.48495 * 109.47084 * 149.99779 * 3 2 1 7 7 C 1.37885 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99608 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47163 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47011 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46807 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99793 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46769 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.46769 * 180.02562 * 14 13 12 16 16 C 1.48534 * 111.00172 * 52.60936 * 15 14 13 17 17 C 1.54933 * 103.22824 * 159.71827 * 16 15 14 18 18 C 1.54594 * 102.92252 * 322.58255 * 17 16 15 19 19 C 1.47912 * 110.99681 * 170.00135 * 15 14 13 20 20 H 0.96993 * 120.00442 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47608 * 59.99911 * 9 7 2 22 22 H 1.09005 * 109.47178 * 300.00038 * 9 7 2 23 23 H 1.09002 * 109.46933 * 59.99495 * 10 9 7 24 24 H 1.08995 * 109.46853 * 299.99599 * 10 9 7 25 25 H 1.09006 * 109.47206 * 60.00545 * 11 10 9 26 26 H 1.08995 * 109.47212 * 299.99658 * 11 10 9 27 27 H 1.00898 * 110.99995 * 56.04917 * 12 11 10 28 28 H 1.09001 * 109.46874 * 60.00179 * 13 12 11 29 29 H 1.08992 * 109.47407 * 300.00197 * 13 12 11 30 30 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 31 31 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 32 32 H 1.08997 * 110.66294 * 278.15766 * 16 15 14 33 33 H 1.09001 * 110.66815 * 41.27720 * 16 15 14 34 34 H 1.09002 * 110.72385 * 204.22928 * 17 16 15 35 35 H 1.09000 * 110.72461 * 80.94436 * 17 16 15 36 36 H 1.08997 * 110.31096 * 263.04565 * 18 17 16 37 37 H 1.09001 * 110.30483 * 140.87303 * 18 17 16 38 38 H 1.08997 * 109.91505 * 333.51116 * 19 15 14 39 39 H 1.08999 * 109.91449 * 94.60846 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6622 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4348 -6.1037 0.0031 13 6 1.7345 -7.3950 0.0043 14 6 2.7595 -8.5310 0.0043 15 7 2.0591 -9.8223 0.0049 16 6 1.0647 -9.8892 -1.0964 17 6 0.8335 -11.4109 -1.2735 18 6 2.2431 -12.0035 -1.0457 19 6 3.0018 -10.9366 -0.2348 20 1 -0.4850 0.8399 -0.0004 21 1 0.6246 -2.5572 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8713 -3.6040 0.8922 24 1 2.8725 -3.6048 -0.8877 25 1 0.8540 -5.0456 -0.8878 26 1 0.8532 -5.0442 0.8922 27 1 3.0696 -6.0363 0.7845 28 1 1.1094 -7.4702 -0.8854 29 1 1.1099 -7.4688 0.8945 30 1 3.3838 -8.4571 -0.8861 31 1 3.3849 -8.4561 0.8939 32 1 0.1391 -9.3901 -0.8097 33 1 1.4713 -9.4530 -2.0089 34 1 0.4800 -11.6327 -2.2805 35 1 0.1328 -11.7841 -0.5266 36 1 2.7395 -12.1768 -2.0005 37 1 2.1759 -12.9323 -0.4792 38 1 3.8612 -10.5802 -0.8026 39 1 3.3325 -11.3543 0.7161 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049900366.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:01 Heat of formation + Delta-G solvation = -17.132172 kcal Electronic energy + Delta-G solvation = -15151.125049 eV Core-core repulsion = 12706.531598 eV Total energy + Delta-G solvation = -2444.593451 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.20690 -36.45757 -33.84678 -32.51758 -30.86805 -29.17913 -27.62783 -25.36319 -22.89592 -22.15012 -21.01034 -20.68652 -19.89789 -16.49432 -16.34621 -16.02006 -15.59208 -14.68360 -14.46815 -14.07982 -13.81689 -13.73337 -13.03261 -12.81967 -12.34768 -12.07874 -11.85749 -11.64960 -11.43897 -11.33330 -11.14549 -10.95587 -10.83403 -10.76871 -10.54935 -10.46275 -9.66697 -9.31412 -9.03105 -8.61617 -8.31987 -8.16488 -5.97108 -3.99132 3.34162 3.39991 3.43775 3.70205 4.35332 4.45287 4.48221 4.62063 4.79356 5.00099 5.05994 5.15503 5.26604 5.38622 5.43657 5.52064 5.54929 5.57974 5.72459 5.74400 5.79467 5.88505 5.89863 5.97139 6.03474 6.34537 6.66198 6.74401 6.75624 6.86691 7.16363 7.35399 7.64213 7.71523 7.86659 8.03541 8.46873 9.08167 9.64685 11.14443 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.085301 B = 0.003297 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.169435 B = 8489.399341 C = 8692.615625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.693 5.693 13 C 0.058 3.942 14 C 0.049 3.951 15 N -0.519 5.519 16 C 0.031 3.969 17 C -0.125 4.125 18 C -0.131 4.131 19 C 0.035 3.965 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.014 0.986 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.025 0.975 27 H 0.337 0.663 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 -22.345 -1.295 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.068 4.068 12 N -0.324 5.324 13 C -0.072 4.072 14 C -0.079 4.079 15 N -0.244 5.244 16 C -0.096 4.096 17 C -0.163 4.163 18 C -0.169 4.169 19 C -0.093 4.093 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.032 0.968 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.154 0.846 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.209 -22.257 -1.462 22.534 hybrid contribution 0.514 1.063 0.145 1.190 sum 3.722 -21.194 -1.317 21.558 Atomic orbital electron populations 1.69964 1.06070 1.26554 1.51062 1.25038 0.94853 0.99274 0.95402 0.86588 0.79837 0.83455 0.78096 1.20661 1.21255 1.19879 1.21266 0.93067 0.91071 1.50300 0.92663 1.19068 0.94022 0.91371 0.97124 1.21628 0.99190 0.92970 1.00715 1.22119 0.94065 0.90683 0.99945 1.60537 1.20591 1.01432 1.49810 1.21950 0.95563 0.88713 1.00944 1.22261 0.96076 0.88175 1.01437 1.64785 1.13637 1.02679 1.43299 1.23274 0.96905 0.96455 0.93016 1.22492 0.97017 0.95020 1.01756 1.22397 0.96002 0.98594 0.99954 1.22870 0.94617 0.91992 0.99813 0.93040 0.96593 0.96781 0.93621 0.92590 0.91559 0.95659 0.84560 0.91200 0.94694 0.93725 0.90781 0.89837 0.93417 0.91093 0.90762 0.91574 0.91075 0.93691 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.28 5.41 -26.73 -0.14 -2.43 16 11 C 0.06 1.09 5.69 -3.82 -0.02 1.06 16 12 N -0.69 -10.54 6.50 -113.78 -0.74 -11.28 16 13 C 0.06 0.76 5.34 -3.82 -0.02 0.74 16 14 C 0.05 0.56 5.29 -3.82 -0.02 0.54 16 15 N -0.52 -5.60 5.40 -230.44 -1.24 -6.84 16 16 C 0.03 0.31 5.10 -1.90 -0.01 0.30 16 17 C -0.12 -0.99 7.06 -24.87 -0.18 -1.16 16 18 C -0.13 -0.98 6.93 -25.37 -0.18 -1.16 16 19 C 0.04 0.32 6.70 -2.75 -0.02 0.30 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.34 4.78 8.73 -39.29 -0.34 4.44 16 28 H 0.07 0.93 6.79 -51.93 -0.35 0.58 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.53 7.81 -51.93 -0.41 0.13 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.83 7.66 -51.93 -0.40 0.44 16 33 H 0.05 0.48 8.00 -51.93 -0.42 0.07 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.40 7.57 -51.93 -0.39 0.01 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -30.47 311.56 -10.05 -40.52 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.35 Total: -2.15 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.14 Total: -15.22 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -1.25 Total: -44.84 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.47 -10.05 -40.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049900366.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.393 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds