Wall clock time and date at job start Mon Mar 30 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00146 * 2 1 4 4 H 1.48504 * 109.46797 * 269.99902 * 3 2 1 5 5 H 1.48494 * 109.46978 * 29.99805 * 3 2 1 6 6 H 1.48495 * 109.47084 * 149.99779 * 3 2 1 7 7 C 1.37885 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99608 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47163 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47011 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46807 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99793 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46769 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.46769 * 180.02562 * 14 13 12 16 16 C 1.48534 * 111.00172 * 52.60936 * 15 14 13 17 17 C 1.54933 * 103.22824 * 159.71827 * 16 15 14 18 18 C 1.54594 * 102.92252 * 322.58255 * 17 16 15 19 19 C 1.47912 * 110.99681 * 170.00135 * 15 14 13 20 20 H 0.96993 * 120.00442 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47608 * 59.99911 * 9 7 2 22 22 H 1.09005 * 109.47178 * 300.00038 * 9 7 2 23 23 H 1.09002 * 109.46933 * 59.99495 * 10 9 7 24 24 H 1.08995 * 109.46853 * 299.99599 * 10 9 7 25 25 H 1.09006 * 109.47206 * 60.00545 * 11 10 9 26 26 H 1.08995 * 109.47212 * 299.99658 * 11 10 9 27 27 H 1.00898 * 110.99995 * 56.04917 * 12 11 10 28 28 H 1.09001 * 109.46874 * 60.00179 * 13 12 11 29 29 H 1.08992 * 109.47407 * 300.00197 * 13 12 11 30 30 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 31 31 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 32 32 H 1.08997 * 110.66294 * 278.15766 * 16 15 14 33 33 H 1.09001 * 110.66815 * 41.27720 * 16 15 14 34 34 H 1.09002 * 110.72385 * 204.22928 * 17 16 15 35 35 H 1.09000 * 110.72461 * 80.94436 * 17 16 15 36 36 H 1.08997 * 110.31096 * 263.04565 * 18 17 16 37 37 H 1.09001 * 110.30483 * 140.87303 * 18 17 16 38 38 H 1.08997 * 109.91505 * 333.51116 * 19 15 14 39 39 H 1.08999 * 109.91449 * 94.60846 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6622 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4348 -6.1037 0.0031 13 6 1.7345 -7.3950 0.0043 14 6 2.7595 -8.5310 0.0043 15 7 2.0591 -9.8223 0.0049 16 6 1.0647 -9.8892 -1.0964 17 6 0.8335 -11.4109 -1.2735 18 6 2.2431 -12.0035 -1.0457 19 6 3.0018 -10.9366 -0.2348 20 1 -0.4850 0.8399 -0.0004 21 1 0.6246 -2.5572 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8713 -3.6040 0.8922 24 1 2.8725 -3.6048 -0.8877 25 1 0.8540 -5.0456 -0.8878 26 1 0.8532 -5.0442 0.8922 27 1 3.0696 -6.0363 0.7845 28 1 1.1094 -7.4702 -0.8854 29 1 1.1099 -7.4688 0.8945 30 1 3.3838 -8.4571 -0.8861 31 1 3.3849 -8.4561 0.8939 32 1 0.1391 -9.3901 -0.8097 33 1 1.4713 -9.4530 -2.0089 34 1 0.4800 -11.6327 -2.2805 35 1 0.1328 -11.7841 -0.5266 36 1 2.7395 -12.1768 -2.0005 37 1 2.1759 -12.9323 -0.4792 38 1 3.8612 -10.5802 -0.8026 39 1 3.3325 -11.3543 0.7161 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049900366.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:00 Heat of formation + Delta-G solvation = -38.061053 kcal Electronic energy + Delta-G solvation = -15152.032593 eV Core-core repulsion = 12706.531598 eV Total energy + Delta-G solvation = -2445.500996 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.99322 -37.80100 -35.64385 -33.96681 -32.38059 -29.92846 -29.03501 -26.96598 -24.31121 -23.46496 -22.05096 -21.66960 -21.22612 -18.50118 -17.40136 -16.99582 -16.65240 -16.51627 -15.63501 -15.47025 -15.10402 -14.68582 -14.28317 -14.12368 -13.72810 -13.43598 -13.30411 -12.93877 -12.68842 -12.49088 -12.36592 -12.29314 -12.15899 -11.98308 -11.87246 -11.53597 -11.42202 -11.38480 -11.09318 -10.56036 -9.47206 -9.40061 -8.20742 -6.32031 1.39953 1.41702 1.52936 2.40743 2.79771 3.12305 3.45604 3.74584 3.76941 4.03965 4.07305 4.18922 4.28540 4.34850 4.37179 4.54259 4.62028 4.69416 4.71342 4.84449 4.87537 4.94779 4.97723 4.99605 5.06313 5.08802 5.19442 5.23562 5.31249 5.50907 5.73519 5.84711 5.87329 5.97389 6.06032 6.25923 6.44554 6.84978 7.37286 8.91393 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.085301 B = 0.003297 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.169435 B = 8489.399341 C = 8692.615625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.073 3.927 12 N -0.692 5.692 13 C 0.064 3.936 14 C 0.058 3.942 15 N -0.531 5.531 16 C 0.027 3.973 17 C -0.122 4.122 18 C -0.128 4.128 19 C 0.031 3.969 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.009 1.009 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.023 0.977 27 H 0.346 0.654 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.712 -23.040 -1.334 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.323 5.323 13 C -0.066 4.066 14 C -0.070 4.070 15 N -0.256 5.256 16 C -0.101 4.101 17 C -0.160 4.160 18 C -0.166 4.166 19 C -0.096 4.096 20 H 0.073 0.927 21 H 0.009 0.991 22 H 0.009 0.991 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.041 0.959 27 H 0.164 0.836 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.413 -22.978 -1.499 23.446 hybrid contribution 0.112 1.238 0.160 1.253 sum 4.525 -21.740 -1.339 22.246 Atomic orbital electron populations 1.70096 1.07851 1.27830 1.51720 1.26021 0.95809 1.03491 0.94683 0.85415 0.78654 0.78248 0.78544 1.19718 1.20641 1.18680 1.21710 0.93588 0.92395 1.50526 0.92164 1.18975 0.94431 0.93135 0.94755 1.21379 0.98035 0.92772 1.00844 1.21823 0.93939 0.90188 0.99648 1.60447 1.20099 1.01431 1.50352 1.21924 0.95880 0.88163 1.00616 1.22121 0.95413 0.88058 1.01448 1.64793 1.14233 1.02673 1.43909 1.23311 0.96382 0.97922 0.92480 1.22496 0.97446 0.93463 1.02566 1.22408 0.95389 0.98480 1.00333 1.22952 0.94481 0.91788 1.00404 0.92727 0.99061 0.99074 0.92935 0.92819 0.92114 0.95853 0.83633 0.91489 0.95031 0.94145 0.90312 0.90483 0.93939 0.89832 0.90713 0.90705 0.89904 0.93683 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.93 5.41 30.60 0.17 -3.77 16 11 C 0.07 2.62 5.69 86.30 0.49 3.11 16 12 N -0.69 -20.36 6.50 -513.88 -3.34 -23.70 16 13 C 0.06 1.62 5.34 86.30 0.46 2.08 16 14 C 0.06 1.26 5.29 86.30 0.46 1.72 16 15 N -0.53 -10.79 5.40 -882.99 -4.77 -15.55 16 16 C 0.03 0.50 5.10 86.65 0.44 0.94 16 17 C -0.12 -1.72 7.06 31.80 0.22 -1.49 16 18 C -0.13 -1.64 6.93 31.47 0.22 -1.43 16 19 C 0.03 0.51 6.70 86.44 0.58 1.09 16 20 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 21 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 22 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 23 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.06 2.23 8.14 -2.38 -0.02 2.22 16 26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.35 9.30 8.73 -89.70 -0.78 8.51 16 28 H 0.07 1.75 6.79 -2.39 -0.02 1.73 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.92 7.81 -2.39 -0.02 0.90 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.50 7.66 -2.39 -0.02 1.49 16 33 H 0.04 0.83 8.00 -2.39 -0.02 0.81 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.04 0.73 7.57 -2.39 -0.02 0.71 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -64.46 311.56 -1.71 -66.17 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.20 Total: 11.29 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 3.88 Total: -27.51 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -7.82 Total: -96.91 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.46 -1.71 -66.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049900366.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.114 kcal (2) G-P(sol) polarization free energy of solvation -64.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds