Wall clock time and date at job start Mon Mar 30 2020 02:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48499 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46940 * 300.00410 * 3 2 1 6 6 H 1.48500 * 109.46824 * 59.99996 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.47859 * 179.97438 * 14 13 12 16 16 C 1.48533 * 110.99670 * 52.60024 * 15 14 13 17 17 C 1.54936 * 103.22827 * 159.72645 * 16 15 14 18 18 C 1.54602 * 102.91755 * 322.58844 * 17 16 15 19 19 C 1.47895 * 111.00585 * 169.99973 * 15 14 13 20 20 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 22 22 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 23 23 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 24 24 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 25 25 H 1.00908 * 110.99583 * 303.94989 * 11 10 9 26 26 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 27 27 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 28 28 H 1.09002 * 109.47153 * 300.00004 * 13 12 11 29 29 H 1.08998 * 109.47533 * 59.99633 * 13 12 11 30 30 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 31 31 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 32 32 H 1.09002 * 110.67270 * 278.16471 * 16 15 14 33 33 H 1.08998 * 110.66667 * 41.29259 * 16 15 14 34 34 H 1.09002 * 110.72666 * 204.23420 * 17 16 15 35 35 H 1.08998 * 110.72369 * 80.94172 * 17 16 15 36 36 H 1.09001 * 110.30688 * 263.03605 * 18 17 16 37 37 H 1.08996 * 110.30747 * 140.87557 * 18 17 16 38 38 H 1.08994 * 109.91810 * 333.51090 * 19 15 14 39 39 H 1.08999 * 109.91451 * 94.60787 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6354 -7.3800 -0.0006 14 6 2.5982 -8.5690 -0.0006 15 7 1.8302 -9.8212 0.0000 16 6 0.8336 -9.8348 -1.1013 17 6 0.5215 -11.3421 -1.2784 18 6 1.8976 -12.0090 -1.0506 19 6 2.7120 -10.9841 -0.2398 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8906 25 1 0.8742 -4.9845 0.7801 26 1 3.0640 -6.0348 -0.8901 27 1 3.0628 -6.0349 0.8899 28 1 1.0071 -7.4208 0.8892 29 1 1.0077 -7.4213 -0.8907 30 1 3.2262 -8.5279 -0.8906 31 1 3.2262 -8.5280 0.8894 32 1 -0.0642 -9.2872 -0.8146 33 1 1.2629 -9.4211 -2.0137 34 1 0.1567 -11.5448 -2.2854 35 1 -0.1980 -11.6774 -0.5315 36 1 2.3839 -12.2086 -2.0054 37 1 1.7810 -12.9329 -0.4842 38 1 3.5892 -10.6741 -0.8076 39 1 3.0200 -11.4188 0.7111 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059382911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:58 Heat of formation + Delta-G solvation = -38.324467 kcal Electronic energy + Delta-G solvation = -15149.885180 eV Core-core repulsion = 12704.372762 eV Total energy + Delta-G solvation = -2445.512418 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.96336 -37.82167 -35.47427 -34.23135 -31.92326 -30.05005 -29.47787 -26.50513 -24.64431 -22.90968 -22.45169 -21.67091 -21.11569 -18.52702 -17.23565 -16.99475 -16.71809 -16.49758 -15.64981 -15.42480 -15.02425 -14.76708 -14.21392 -14.17501 -13.76479 -13.32065 -13.11538 -13.01635 -12.81198 -12.46981 -12.29916 -12.17359 -12.07514 -12.01532 -11.95792 -11.58768 -11.41804 -11.38321 -11.19726 -10.58192 -9.39780 -9.30604 -8.21418 -6.33267 1.40033 1.40712 1.54138 2.39885 2.95297 3.11919 3.38555 3.76542 3.82278 3.99496 4.13500 4.22293 4.33862 4.36875 4.46594 4.53042 4.58849 4.65678 4.72212 4.74268 4.79290 4.93487 4.98175 5.04400 5.07589 5.14878 5.23005 5.25159 5.32852 5.43703 5.65471 5.77292 5.95328 6.05929 6.13596 6.26986 6.52294 6.84134 7.36188 8.91108 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.084502 B = 0.003306 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.273360 B = 8468.048858 C = 8676.157660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.031 3.969 10 C 0.083 3.917 11 N -0.700 5.700 12 C 0.063 3.937 13 C -0.104 4.104 14 C 0.055 3.945 15 N -0.533 5.533 16 C 0.029 3.971 17 C -0.123 4.123 18 C -0.128 4.128 19 C 0.030 3.970 20 H 0.264 0.736 21 H -0.006 1.006 22 H -0.008 1.008 23 H 0.019 0.981 24 H 0.057 0.943 25 H 0.339 0.661 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.976 -22.816 -1.355 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.046 4.046 11 N -0.331 5.331 12 C -0.067 4.067 13 C -0.142 4.142 14 C -0.074 4.074 15 N -0.257 5.257 16 C -0.099 4.099 17 C -0.161 4.161 18 C -0.166 4.166 19 C -0.097 4.097 20 H 0.073 0.927 21 H 0.012 0.988 22 H 0.010 0.990 23 H 0.037 0.963 24 H 0.076 0.924 25 H 0.156 0.844 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.523 -22.755 -1.529 23.250 hybrid contribution 0.839 1.253 0.172 1.518 sum 5.362 -21.502 -1.357 22.202 Atomic orbital electron populations 1.70111 1.07863 1.27813 1.51412 1.26007 0.95804 1.03483 0.94571 0.85341 0.79002 0.78474 0.77859 1.18544 1.20280 1.20224 1.21650 0.93559 0.92254 1.50944 0.92124 1.18933 0.94325 0.92350 0.95067 1.21785 0.95616 0.88443 0.98734 1.60505 1.20481 1.01960 1.50160 1.21913 0.94456 0.89955 1.00349 1.21475 0.98090 0.91995 1.02681 1.22182 0.95258 0.88806 1.01126 1.64802 1.14427 1.02586 1.43902 1.23286 0.96267 0.97895 0.92444 1.22503 0.97552 0.93535 1.02488 1.22407 0.95371 0.98542 1.00311 1.22950 0.95029 0.91459 1.00305 0.92680 0.98758 0.99009 0.96252 0.92429 0.84362 0.91513 0.95110 0.91684 0.91672 0.94416 0.90384 0.90484 0.93978 0.89907 0.90807 0.90725 0.90011 0.93680 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.68 5.23 29.85 0.16 1.84 16 10 C 0.08 3.62 5.62 86.30 0.49 4.11 16 11 N -0.70 -25.77 6.50 -513.89 -3.34 -29.11 16 12 C 0.06 1.81 5.68 86.30 0.49 2.30 16 13 C -0.10 -2.54 5.13 30.59 0.16 -2.38 16 14 C 0.05 1.15 5.03 86.30 0.43 1.59 16 15 N -0.53 -10.84 5.40 -883.07 -4.76 -15.60 16 16 C 0.03 0.54 5.10 86.65 0.44 0.98 16 17 C -0.12 -1.79 7.06 31.80 0.22 -1.56 16 18 C -0.13 -1.68 6.93 31.47 0.22 -1.46 16 19 C 0.03 0.49 6.69 86.45 0.58 1.07 16 20 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 21 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 22 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 23 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.34 12.15 8.73 -89.69 -0.78 11.36 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.68 6.79 -2.39 -0.02 1.66 16 30 H 0.04 0.77 7.81 -2.39 -0.02 0.75 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.56 7.67 -2.39 -0.02 1.54 16 33 H 0.04 0.82 8.00 -2.39 -0.02 0.80 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.04 0.71 7.57 -2.39 -0.02 0.70 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -64.64 311.57 -1.71 -66.35 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.20 Total: 13.70 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 3.88 Total: -24.68 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -7.82 Total: -102.15 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.64 -1.71 -66.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059382911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.024 kcal (2) G-P(sol) polarization free energy of solvation -64.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds