Wall clock time and date at job start Mon Mar 30 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00052 * 2 1 4 4 H 1.48509 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47148 * 299.99914 * 3 2 1 6 6 H 1.48497 * 109.47468 * 59.99992 * 3 2 1 7 7 C 1.37882 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00280 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47093 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47179 * 179.97438 * 10 9 7 12 12 C 1.46847 * 110.99919 * 51.49985 * 11 10 9 13 13 C 1.53039 * 109.52511 * 185.83908 * 12 11 10 14 14 C 1.53122 * 109.27911 * 300.82607 * 13 12 11 15 15 C 1.53122 * 109.16249 * 57.65102 * 14 13 12 16 16 C 1.46840 * 111.00169 * 175.71374 * 11 10 9 17 17 H 1.09001 * 109.46209 * 294.17778 * 16 11 10 18 18 C 1.52997 * 109.46346 * 54.14282 * 16 11 10 19 19 C 1.53006 * 109.47255 * 185.29173 * 18 16 11 20 20 N 1.46897 * 109.47042 * 174.76959 * 19 18 16 21 21 H 0.96993 * 120.00082 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47200 * 59.99733 * 9 7 2 23 23 H 1.09005 * 109.47036 * 299.99789 * 9 7 2 24 24 H 1.08994 * 109.47381 * 59.99887 * 10 9 7 25 25 H 1.08996 * 109.46878 * 299.99696 * 10 9 7 26 26 H 1.08994 * 109.46728 * 305.86059 * 12 11 10 27 27 H 1.09008 * 109.46258 * 65.82797 * 12 11 10 28 28 H 1.08998 * 109.50442 * 180.88411 * 13 12 11 29 29 H 1.09006 * 109.53101 * 60.78073 * 13 12 11 30 30 H 1.08999 * 109.52111 * 297.74778 * 14 13 12 31 31 H 1.08996 * 109.57809 * 177.58671 * 14 13 12 32 32 H 1.09000 * 109.50478 * 182.40735 * 15 14 13 33 33 H 1.08999 * 109.53529 * 62.30504 * 15 14 13 34 34 H 1.09001 * 109.47248 * 305.28871 * 18 16 11 35 35 H 1.09002 * 109.47423 * 65.29114 * 18 16 11 36 36 H 1.09006 * 109.47086 * 294.76872 * 19 18 16 37 37 H 1.08996 * 109.47230 * 54.76719 * 19 18 16 38 38 H 1.00902 * 111.00279 * 56.04743 * 20 19 18 39 39 H 1.00900 * 110.99737 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2124 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9343 0.0012 12 6 0.5081 -4.9636 -1.0714 13 6 -0.3330 -6.2365 -0.9507 14 6 0.5834 -7.4592 -1.0494 15 6 1.6478 -7.3796 0.0484 16 6 2.4314 -6.0736 -0.1013 17 1 2.9249 -6.0555 -1.0730 18 6 3.4831 -5.9803 1.0060 19 6 4.5186 -7.0914 0.8208 20 7 5.5949 -6.9269 1.8070 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8904 24 1 2.8719 -3.6044 0.8904 25 1 2.8718 -3.6043 -0.8895 26 1 -0.1395 -4.0910 -0.9872 27 1 1.0106 -4.9508 -2.0387 28 1 -1.0667 -6.2656 -1.7562 29 1 -0.8471 -6.2437 0.0105 30 1 1.0677 -7.4736 -2.0259 31 1 -0.0048 -8.3678 -0.9212 32 1 2.3292 -8.2254 -0.0433 33 1 1.1659 -7.4048 1.0258 34 1 3.9781 -5.0104 0.9563 35 1 2.9998 -6.0922 1.9766 36 1 4.0408 -8.0608 0.9628 37 1 4.9355 -7.0356 -0.1847 38 1 5.2257 -6.9104 2.7459 39 1 6.2918 -7.6495 1.7054 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069721117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:24 Heat of formation + Delta-G solvation = -20.569065 kcal Electronic energy + Delta-G solvation = -16289.128526 eV Core-core repulsion = 13844.386040 eV Total energy + Delta-G solvation = -2444.742486 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.11637 -35.37674 -34.14735 -32.48330 -31.58344 -28.99089 -27.35722 -24.90017 -23.51836 -22.56615 -20.55634 -20.10420 -19.22200 -16.52047 -15.82344 -15.40685 -14.95704 -14.68992 -14.31863 -14.08384 -13.67132 -13.48027 -13.14268 -12.70537 -12.46362 -12.02489 -11.61182 -11.41073 -11.12329 -11.07119 -10.93527 -10.68763 -10.56907 -10.47560 -10.21703 -9.88305 -9.65034 -9.22160 -9.00943 -8.72351 -8.30081 -7.60504 -5.96994 -3.98699 3.33607 3.40963 3.45646 4.29637 4.49101 4.65711 4.97494 5.06375 5.14791 5.22559 5.39095 5.39458 5.49187 5.62304 5.68939 5.79204 5.89327 5.90433 6.09264 6.14104 6.18241 6.24980 6.38573 6.42082 6.46143 6.52351 6.66401 6.70064 7.03241 7.06851 7.35168 7.59832 7.69515 7.88045 7.92378 8.10847 8.47906 9.08545 9.64869 11.14521 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.006826 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.448670 B = 4100.935092 C = 5078.181791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.023 3.977 10 C 0.061 3.939 11 N -0.534 5.534 12 C 0.052 3.948 13 C -0.117 4.117 14 C -0.120 4.120 15 C -0.111 4.111 16 C 0.088 3.912 17 H 0.032 0.968 18 C -0.116 4.116 19 C 0.063 3.937 20 N -0.852 5.852 21 H 0.259 0.741 22 H 0.019 0.981 23 H 0.024 0.976 24 H 0.066 0.934 25 H 0.017 0.983 26 H 0.092 0.908 27 H 0.023 0.977 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.067 0.933 38 H 0.340 0.660 39 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.103 -15.996 0.058 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.065 4.065 11 N -0.259 5.259 12 C -0.076 4.076 13 C -0.154 4.154 14 C -0.157 4.157 15 C -0.148 4.148 16 C -0.022 4.022 17 H 0.050 0.950 18 C -0.154 4.154 19 C -0.068 4.068 20 N -0.381 5.381 21 H 0.069 0.931 22 H 0.037 0.963 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.035 0.965 26 H 0.110 0.890 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.153 0.847 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.840 -15.214 0.134 15.692 hybrid contribution 0.564 0.097 -0.471 0.741 sum 4.404 -15.117 -0.337 15.749 Atomic orbital electron populations 1.69976 1.06017 1.26425 1.50970 1.24990 0.94825 0.99173 0.95357 0.86549 0.80160 0.83840 0.77541 1.19735 1.21075 1.20994 1.21242 0.93065 0.91030 1.50454 0.92712 1.19211 0.94098 0.90467 0.97692 1.22352 0.96997 0.88181 0.98999 1.62020 1.15305 1.02587 1.45939 1.22158 0.94953 0.98614 0.91881 1.21606 0.97580 0.94275 1.01977 1.21576 0.97458 0.98087 0.98618 1.21665 0.97337 0.96255 0.99576 1.21524 0.92322 0.91661 0.96670 0.94984 1.21689 0.95037 0.99604 0.99081 1.21833 0.91837 0.96898 0.96207 1.58681 1.16201 1.55118 1.08094 0.93098 0.96310 0.95752 0.91542 0.96514 0.88961 0.95844 0.92142 0.91307 0.92699 0.92457 0.92350 0.91355 0.90184 0.91526 0.95648 0.91450 0.84740 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.59 4.46 -27.89 -0.12 0.47 16 10 C 0.06 1.34 4.39 -3.82 -0.02 1.32 16 11 N -0.53 -9.95 4.60 -226.69 -1.04 -10.99 16 12 C 0.05 0.93 5.02 -3.83 -0.02 0.91 16 13 C -0.12 -1.68 6.09 -26.65 -0.16 -1.84 16 14 C -0.12 -1.49 6.00 -26.61 -0.16 -1.65 16 15 C -0.11 -1.42 5.11 -26.65 -0.14 -1.55 16 16 C 0.09 1.34 1.90 -67.73 -0.13 1.21 16 17 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 18 C -0.12 -1.66 4.69 -26.73 -0.13 -1.79 16 19 C 0.06 0.74 6.41 -3.82 -0.02 0.71 16 20 N -0.85 -9.21 9.62 -10.37 -0.10 -9.31 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.02 0.52 6.19 -51.93 -0.32 0.20 16 23 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 1.45 6.36 -51.93 -0.33 1.12 16 25 H 0.02 0.37 8.13 -51.93 -0.42 -0.05 16 26 H 0.09 1.88 5.84 -51.93 -0.30 1.57 16 27 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.64 6.74 -51.93 -0.35 0.29 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.33 6.11 -51.93 -0.32 1.02 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.03 0.26 6.85 -51.93 -0.36 -0.09 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.34 3.33 8.99 -39.29 -0.35 2.97 16 39 H 0.34 2.88 9.08 -39.29 -0.36 2.53 16 LS Contribution 298.79 15.07 4.50 4.50 Total: -1.00 -30.36 298.79 -9.11 -39.48 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.88 Total: 1.69 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.31 Total: -15.91 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.41 Total: -46.72 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.36 -9.11 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069721117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.908 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds