Wall clock time and date at job start Mon Mar 30 2020 02:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46846 * 111.00018 * 294.20961 * 11 10 9 13 13 C 1.53033 * 109.52460 * 174.16134 * 12 11 10 14 14 C 1.53124 * 109.27811 * 59.18358 * 13 12 11 15 15 C 1.52997 * 109.57677 * 182.41245 * 14 13 12 16 16 C 1.53003 * 109.46682 * 294.71189 * 15 14 13 17 17 N 1.46906 * 109.46847 * 180.02562 * 16 15 14 18 18 C 1.53125 * 109.15751 * 302.34732 * 14 13 12 19 19 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 20 20 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 22 22 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 23 23 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 24 24 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 25 25 H 1.09002 * 109.46555 * 294.18280 * 12 11 10 26 26 H 1.09001 * 109.46296 * 54.14881 * 12 11 10 27 27 H 1.08997 * 109.50475 * 299.23909 * 13 12 11 28 28 H 1.09002 * 109.50799 * 179.12007 * 13 12 11 29 29 H 1.08994 * 109.52258 * 62.24925 * 14 13 12 30 30 H 1.09004 * 109.47282 * 54.71039 * 15 14 13 31 31 H 1.09000 * 109.47154 * 174.71313 * 15 14 13 32 32 H 1.08996 * 109.47003 * 299.99656 * 16 15 14 33 33 H 1.09000 * 109.47225 * 60.00167 * 16 15 14 34 34 H 1.00902 * 110.99817 * 180.02562 * 17 16 15 35 35 H 1.00907 * 110.99750 * 303.95014 * 17 16 15 36 36 H 1.09005 * 109.50073 * 297.71107 * 18 14 13 37 37 H 1.08991 * 109.50379 * 177.59621 * 18 14 13 38 38 H 1.08989 * 109.46428 * 305.85572 * 19 11 10 39 39 H 1.09002 * 109.45912 * 65.83533 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.7605 -5.1093 1.2489 13 6 -0.1037 -6.3687 1.1546 14 6 0.7964 -7.5818 0.9037 15 6 -0.0656 -8.8363 0.7483 16 6 -0.7750 -9.1345 2.0708 17 7 -1.6022 -10.3394 1.9218 18 6 1.6025 -7.3529 -0.3779 19 6 2.4172 -6.0650 -0.2392 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6248 -2.5571 0.8896 23 1 2.8721 -3.6042 -0.8905 24 1 2.8721 -3.6043 0.8895 25 1 1.4582 -5.2089 2.0805 26 1 0.1214 -4.2418 1.4133 27 1 -0.8110 -6.2639 0.3319 28 1 -0.6487 -6.5069 2.0884 29 1 1.4778 -7.7099 1.7446 30 1 -0.8077 -8.6728 -0.0332 31 1 0.5677 -9.6810 0.4771 32 1 -0.0330 -9.2980 2.8522 33 1 -1.4083 -8.2898 2.3419 34 1 -2.0818 -10.5573 2.7824 35 1 -2.2557 -10.2374 1.1598 36 1 0.9220 -7.2637 -1.2248 37 1 2.2764 -8.1942 -0.5390 38 1 2.9813 -5.8916 -1.1555 39 1 3.1070 -6.1603 0.5994 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069730026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:37 Heat of formation + Delta-G solvation = -48.631925 kcal Electronic energy + Delta-G solvation = -15882.692186 eV Core-core repulsion = 13436.732803 eV Total energy + Delta-G solvation = -2445.959383 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24299 -37.23333 -35.46398 -34.22814 -31.90570 -31.43878 -28.97419 -26.32435 -24.34919 -24.22526 -22.13894 -21.62206 -20.60451 -18.60693 -16.89857 -16.57081 -16.51624 -16.21374 -15.87411 -15.25973 -15.15639 -14.76221 -14.48955 -14.15915 -13.96155 -13.51979 -13.11501 -13.01435 -12.83685 -12.60576 -12.40183 -12.10765 -12.08220 -11.83412 -11.65068 -11.42555 -11.31188 -11.04842 -10.94618 -10.53567 -9.57295 -9.15167 -8.20943 -6.32613 1.39380 1.41254 1.52174 2.39586 3.09919 3.12224 3.56927 3.83585 3.87634 4.03722 4.23904 4.31729 4.36271 4.51188 4.53024 4.57003 4.63817 4.68345 4.72361 4.84835 4.96165 4.99832 5.06198 5.10045 5.17393 5.21957 5.28736 5.36533 5.44945 5.55916 5.66854 5.78517 6.11707 6.24413 6.34206 6.38124 6.60567 6.84442 7.36509 8.91272 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.054868 B = 0.004641 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.188740 B = 6032.381508 C = 6377.808369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.037 3.963 10 C 0.078 3.922 11 N -0.551 5.551 12 C 0.054 3.946 13 C -0.102 4.102 14 C -0.080 4.080 15 C -0.101 4.101 16 C 0.059 3.941 17 N -0.860 5.860 18 C -0.103 4.103 19 C 0.052 3.948 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.006 1.006 23 H 0.063 0.937 24 H 0.017 0.983 25 H 0.026 0.974 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.348 0.652 35 H 0.345 0.655 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 -17.840 3.057 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.049 4.049 11 N -0.276 5.276 12 C -0.074 4.074 13 C -0.140 4.140 14 C -0.099 4.099 15 C -0.139 4.139 16 C -0.072 4.072 17 N -0.390 5.390 18 C -0.140 4.140 19 C -0.076 4.076 20 H 0.073 0.927 21 H 0.009 0.991 22 H 0.012 0.988 23 H 0.081 0.919 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.464 -18.105 2.535 18.287 hybrid contribution -0.093 1.911 0.850 2.094 sum 0.371 -16.194 3.385 16.548 Atomic orbital electron populations 1.70109 1.07845 1.27803 1.51395 1.25976 0.95770 1.03363 0.94563 0.85414 0.78607 0.78242 0.78563 1.19669 1.20622 1.18743 1.21636 0.93512 0.92338 1.51004 0.92239 1.18918 0.94194 0.91981 0.94947 1.21962 0.95381 0.88744 0.98818 1.61953 1.28055 1.02220 1.35372 1.22080 0.96695 0.98832 0.89747 1.21635 0.97545 0.92854 1.01943 1.21126 0.96772 0.93983 0.98030 1.21482 0.98737 0.96535 0.97127 1.21830 0.96605 0.90752 0.97963 1.58754 1.30791 1.38370 1.11111 1.21594 0.98798 0.95753 0.97901 1.22171 0.94045 0.90974 1.00375 0.92729 0.99077 0.98803 0.91895 0.96520 0.95582 0.93045 0.92245 0.90564 0.91221 0.92184 0.90972 0.91295 0.95332 0.83891 0.84245 0.91837 0.89559 0.90886 0.95249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.04 2.05 4.90 29.85 0.15 2.19 16 10 C 0.08 3.48 4.90 86.31 0.42 3.91 16 11 N -0.55 -20.77 4.66 -896.37 -4.17 -24.95 16 12 C 0.05 1.92 5.29 86.32 0.46 2.37 16 13 C -0.10 -2.74 5.08 30.65 0.16 -2.58 16 14 C -0.08 -1.75 2.25 -10.71 -0.02 -1.78 16 15 C -0.10 -1.85 4.95 30.59 0.15 -1.70 16 16 C 0.06 1.01 6.55 86.30 0.57 1.58 16 17 N -0.86 -13.06 9.62 -186.71 -1.80 -14.86 16 18 C -0.10 -2.39 5.38 30.65 0.16 -2.22 16 19 C 0.05 1.52 5.46 86.32 0.47 2.00 16 20 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 21 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 22 H -0.01 -0.37 6.43 -2.39 -0.02 -0.39 16 23 H 0.06 2.72 7.99 -2.39 -0.02 2.70 16 24 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 25 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 2.13 6.21 -2.39 -0.01 2.12 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 1.80 6.71 -2.39 -0.02 1.78 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.03 0.50 6.64 -2.39 -0.02 0.49 16 34 H 0.35 4.21 9.08 -89.69 -0.81 3.40 16 35 H 0.34 4.61 8.99 -89.69 -0.81 3.80 16 36 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 2.08 8.01 -2.39 -0.02 2.06 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -65.64 303.40 -1.06 -66.70 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -0.61 Total: 11.18 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 3.21 Total: -27.46 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -5.69 Total: -97.30 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.64 -1.06 -66.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069730026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.069 kcal (2) G-P(sol) polarization free energy of solvation -65.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds