Wall clock time and date at job start Mon Mar 30 2020 02:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52997 * 109.46974 * 119.99774 * 2 1 3 5 5 C 1.52996 * 109.47165 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46972 * 300.00293 * 5 4 2 7 7 H 1.09000 * 109.46986 * 299.99742 * 6 5 4 8 8 O 1.42905 * 109.47487 * 180.02562 * 6 5 4 9 9 C 1.42899 * 113.99931 * 89.99291 * 8 6 5 10 10 C 1.52999 * 109.46775 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.47242 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00110 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00262 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99711 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99935 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47672 * 89.99644 * 15 13 11 17 17 H 1.48499 * 109.46791 * 209.99783 * 15 13 11 18 18 H 1.48504 * 109.47174 * 329.99531 * 15 13 11 19 19 C 1.52997 * 109.47415 * 59.99860 * 6 5 4 20 20 C 1.52999 * 109.47000 * 240.00185 * 2 1 3 21 21 H 1.09000 * 109.47160 * 299.99635 * 20 2 1 22 22 C 1.52997 * 109.47592 * 59.99968 * 20 2 1 23 23 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47372 * 300.00408 * 1 2 3 25 25 H 1.09004 * 109.47107 * 60.00109 * 1 2 3 26 26 H 1.09000 * 109.47140 * 60.00393 * 4 2 1 27 27 H 1.09001 * 109.47375 * 300.00376 * 4 2 1 28 28 H 1.08992 * 109.47534 * 180.02562 * 5 4 2 29 29 H 1.08996 * 109.47134 * 59.99508 * 5 4 2 30 30 H 1.09002 * 109.47332 * 300.00234 * 9 8 6 31 31 H 1.09002 * 109.47287 * 60.00990 * 9 8 6 32 32 H 1.08994 * 109.47335 * 300.00351 * 10 9 8 33 33 H 1.09005 * 109.47114 * 60.00361 * 10 9 8 34 34 H 0.96997 * 119.99685 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.46922 * 180.02562 * 19 6 5 36 36 H 1.09000 * 109.47140 * 59.99976 * 19 6 5 37 37 H 1.09001 * 109.47375 * 179.97438 * 22 20 2 38 38 H 1.09002 * 109.46777 * 300.00227 * 22 20 2 39 39 H 1.09000 * 109.47140 * 59.99654 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4415 0.0004 7 1 3.7175 -2.4693 0.0002 8 8 5.5096 -1.4416 0.0009 9 6 6.0904 -2.5723 0.6536 10 6 7.6157 -2.4674 0.5943 11 6 8.2284 -3.6601 1.2821 12 1 7.5934 -4.4175 1.7176 13 6 9.5996 -3.7845 1.3555 14 7 10.3728 -2.8625 0.8247 15 14 10.3590 -5.2633 2.2074 16 1 10.5618 -6.3536 1.2198 17 1 11.6672 -4.8781 2.7950 18 1 9.4517 -5.7338 3.2848 19 6 3.5705 -0.7204 -1.2489 20 6 2.0400 -0.7212 -1.2493 21 1 1.6767 -1.7489 -1.2493 22 6 1.5301 0.0000 -2.4985 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6767 -1.7489 1.2493 27 1 1.6766 -0.2074 2.1392 28 1 3.9333 -1.2348 2.1393 29 1 3.9329 0.3071 1.2497 30 1 5.7684 -2.5960 1.6947 31 1 5.7691 -3.4857 0.1529 32 1 7.9380 -2.4435 -0.4466 33 1 7.9368 -1.5541 1.0953 34 1 11.3375 -2.9502 0.8760 35 1 3.9339 -1.2343 -2.1388 36 1 3.9335 0.3074 -1.2487 37 1 1.8938 -0.5136 -3.3885 38 1 0.4401 0.0000 -2.4985 39 1 1.8934 1.0277 -2.4985 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082840680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:12 Heat of formation + Delta-G solvation = -94.328206 kcal Electronic energy + Delta-G solvation = -15912.416709 eV Core-core repulsion = 13432.183035 eV Total energy + Delta-G solvation = -2480.233674 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.37525 -36.77251 -33.29849 -32.29245 -31.68230 -29.58367 -27.10924 -25.29294 -24.35815 -21.91562 -20.86292 -20.65429 -19.65071 -16.61735 -15.52225 -15.25427 -14.84667 -14.70500 -14.42686 -14.26062 -13.77857 -13.02007 -12.82569 -12.65151 -12.18854 -12.05565 -11.92357 -11.74331 -11.60737 -11.10847 -10.95719 -10.90626 -10.67556 -10.63158 -10.43536 -10.29078 -10.07793 -9.92009 -9.40202 -9.17046 -8.74547 -8.32991 -6.01165 -4.04640 3.32030 3.37759 3.41092 4.20701 4.48597 4.60935 4.70196 4.90510 5.08679 5.22422 5.34784 5.35764 5.40694 5.43097 5.52201 5.56314 5.63104 5.73597 5.82724 5.82986 5.87993 6.00298 6.01900 6.16533 6.17517 6.29098 6.30237 6.32181 6.39674 6.52321 6.56175 6.93979 7.60254 7.82639 7.88033 8.17419 8.39358 9.02088 9.58887 11.10561 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.058585 B = 0.004518 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.824392 B = 6195.734771 C = 6421.850309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.111 4.111 5 C -0.142 4.142 6 C 0.089 3.911 7 H 0.052 0.948 8 O -0.387 6.387 9 C 0.070 3.930 10 C 0.025 3.975 11 C -0.523 4.523 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.891 5.891 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.110 4.110 20 C -0.084 4.084 21 H 0.069 0.931 22 C -0.147 4.147 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.921 5.169 -2.648 19.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.179 4.179 6 C 0.031 3.969 7 H 0.070 0.930 8 O -0.306 6.306 9 C -0.006 4.006 10 C -0.012 4.012 11 C -0.562 4.562 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.148 4.148 20 C -0.103 4.103 21 H 0.087 0.913 22 C -0.205 4.205 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.617 5.362 -2.755 19.568 hybrid contribution 0.405 -1.025 0.640 1.275 sum -18.212 4.337 -2.115 18.840 Atomic orbital electron populations 1.21894 0.95534 1.01665 1.01467 1.21202 0.95115 0.99792 0.94630 0.91125 1.21549 0.95424 1.00510 0.97352 1.22041 0.94975 1.01963 0.98958 1.21944 0.82926 0.97960 0.94109 0.93035 1.87952 1.17328 1.46677 1.78650 1.22883 0.97581 0.85948 0.94188 1.19066 0.86389 0.97643 0.98130 1.21068 0.91582 1.06835 1.36690 0.92600 1.24998 0.97241 0.96454 0.95604 1.69986 1.04271 1.33877 1.44882 0.86531 0.78646 0.82714 0.79740 1.20578 1.21116 1.19836 1.21642 0.93999 1.01593 0.97568 1.21127 0.94952 0.99637 0.94536 0.91293 1.21872 1.00751 1.00559 0.97281 0.92837 0.92951 0.92482 0.92126 0.91999 0.91752 0.91338 0.94862 0.94875 0.95808 0.95789 0.92873 0.91444 0.91292 0.92710 0.92511 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.84 37.16 0.33 -0.91 16 2 C -0.09 -0.90 2.25 -90.62 -0.20 -1.10 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.23 5.20 -26.73 -0.14 -1.37 16 5 C -0.14 -2.01 5.54 -26.73 -0.15 -2.16 16 6 C 0.09 1.43 2.61 -26.73 -0.07 1.36 16 7 H 0.05 0.81 7.78 -51.93 -0.40 0.41 16 8 O -0.39 -8.12 9.99 -35.23 -0.35 -8.47 16 9 C 0.07 1.58 5.69 37.16 0.21 1.79 16 10 C 0.02 0.69 5.34 -27.89 -0.15 0.54 16 11 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -27.32 13.29 55.43 0.74 -26.59 16 15 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.11 -1.50 4.86 -26.71 -0.13 -1.63 16 20 C -0.08 -0.90 2.25 -90.60 -0.20 -1.10 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 22 C -0.15 -1.35 8.84 37.16 0.33 -1.02 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.96 7.87 -51.93 -0.41 0.56 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.03 0.73 7.87 -51.93 -0.41 0.32 16 31 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -30.52 306.48 -7.95 -38.47 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -7.35 Total: -5.32 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.59 Total: -19.52 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.74 Total: -26.59 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.35 Total: -8.47 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.52 -7.95 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082840680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.857 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds