Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47064 * 2 1 4 4 C 1.53000 * 109.47311 * 120.00003 * 2 1 3 5 5 H 1.08994 * 109.47208 * 305.06662 * 4 2 1 6 6 C 1.53000 * 109.47142 * 185.06445 * 4 2 1 7 7 C 1.53000 * 109.47142 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47118 * 60.00346 * 7 6 4 9 9 H 1.08994 * 109.47699 * 59.99740 * 8 7 6 10 10 C 1.53005 * 109.47302 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.47124 * 299.99793 * 8 7 6 12 12 C 1.52998 * 109.47118 * 65.06791 * 4 2 1 13 13 O 1.42894 * 109.47380 * 59.99763 * 12 4 2 14 14 C 1.50703 * 109.47033 * 299.99887 * 12 4 2 15 15 H 1.08006 * 119.99901 * 305.43056 * 14 12 4 16 16 C 1.37873 * 120.00134 * 125.42441 * 14 12 4 17 17 N 1.31512 * 120.00188 * 163.73012 * 16 14 12 18 18 Si 1.86806 * 120.00118 * 343.73376 * 16 14 12 19 19 H 1.48491 * 109.47187 * 87.67336 * 18 16 14 20 20 H 1.48500 * 109.46946 * 207.67728 * 18 16 14 21 21 H 1.48504 * 109.46757 * 327.67192 * 18 16 14 22 22 H 1.09002 * 109.47548 * 42.01086 * 1 2 3 23 23 H 1.09000 * 109.47146 * 282.00609 * 1 2 3 24 24 H 1.09007 * 109.46851 * 162.00880 * 1 2 3 25 25 H 1.09000 * 109.47384 * 240.00388 * 2 1 3 26 26 H 1.09005 * 109.47257 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47056 * 299.99878 * 3 2 1 28 28 H 1.09001 * 109.47215 * 60.00070 * 3 2 1 29 29 H 1.09004 * 109.47288 * 300.00198 * 6 4 2 30 30 H 1.09000 * 109.47178 * 60.00447 * 6 4 2 31 31 H 1.09001 * 109.46968 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47191 * 300.00258 * 7 6 4 33 33 H 1.08994 * 109.47344 * 59.99047 * 10 8 7 34 34 H 1.09000 * 109.46902 * 179.97438 * 10 8 7 35 35 H 1.09001 * 109.46488 * 299.99443 * 10 8 7 36 36 H 1.08997 * 109.47752 * 180.02562 * 11 8 7 37 37 H 1.09004 * 109.47220 * 300.00875 * 11 8 7 38 38 H 0.96699 * 114.00254 * 174.10486 * 13 12 4 39 39 H 0.97002 * 120.00705 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6045 -0.2625 2.1369 6 6 3.5647 -0.6119 1.3145 7 6 4.0747 -1.3326 2.5640 8 6 3.6714 -2.8072 2.5026 9 1 4.1068 -3.2664 1.6152 10 6 4.1808 -3.5278 3.7525 11 6 2.1466 -2.9166 2.4374 12 6 1.6367 -2.1958 1.1871 13 8 2.2076 -2.7972 0.0234 14 6 0.1349 -2.3036 1.1229 15 1 -0.4735 -1.8252 1.8761 16 6 -0.4623 -3.0127 0.1024 17 7 -1.7203 -3.3815 0.2065 18 14 0.5155 -3.4499 -1.4281 19 1 1.2212 -4.7387 -1.2133 20 1 -0.4067 -3.5771 -2.5851 21 1 1.5093 -2.3811 -1.7025 22 1 -0.3634 0.7636 -0.6878 23 1 -0.3633 0.2138 1.0052 24 1 -0.3633 -0.9775 -0.3174 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 4.0002 -1.0706 0.4268 30 1 3.8521 0.4386 1.3588 31 1 5.1609 -1.2550 2.6103 32 1 3.6391 -0.8734 3.4515 33 1 3.7451 -3.0685 4.6397 34 1 3.8931 -4.5782 3.7089 35 1 5.2670 -3.4499 3.7993 36 1 1.8592 -3.9671 2.3941 37 1 1.7111 -2.4573 3.3248 38 1 2.0689 -3.7525 -0.0339 39 1 -2.1405 -3.8808 -0.5113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = -58.730495 kcal Electronic energy + Delta-G solvation = -17786.786485 eV Core-core repulsion = 15308.096444 eV Total energy + Delta-G solvation = -2478.690041 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.35500 -35.19861 -34.88649 -32.33372 -30.34983 -29.41787 -26.48136 -25.53621 -24.69393 -21.58502 -20.55729 -19.25719 -18.83377 -16.89808 -15.78763 -15.05363 -14.82317 -14.00000 -13.56447 -13.34828 -12.81490 -12.67298 -12.59182 -12.21814 -11.94722 -11.84082 -11.66467 -11.40787 -11.07824 -10.84140 -10.67684 -10.44718 -10.29161 -10.22086 -9.87970 -9.85595 -9.61321 -9.48171 -9.10810 -8.85877 -8.10519 -7.86073 -6.10158 -3.99620 3.28537 3.58520 3.80179 4.50247 5.05382 5.26643 5.33200 5.44184 5.52749 5.71413 5.76199 5.84213 5.90102 6.08070 6.10044 6.17979 6.23220 6.31958 6.39087 6.44528 6.47086 6.53429 6.60023 6.66488 6.72814 6.76946 6.92306 6.96057 7.03839 7.10902 7.23946 7.39762 7.51077 7.66706 7.91150 8.24558 8.66271 8.90346 9.52185 10.99317 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.014845 C = 0.011087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.500045 B = 1885.661548 C = 2524.986471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.054 4.054 5 H 0.063 0.937 6 C -0.118 4.118 7 C -0.107 4.107 8 C -0.095 4.095 9 H 0.067 0.933 10 C -0.145 4.145 11 C -0.128 4.128 12 C 0.225 3.775 13 O -0.550 6.550 14 C -0.533 4.533 15 H 0.079 0.921 16 C 0.055 3.945 17 N -0.888 5.888 18 Si 0.938 3.062 19 H -0.309 1.309 20 H -0.332 1.332 21 H -0.248 1.248 22 H 0.011 0.989 23 H 0.043 0.957 24 H 0.104 0.896 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.358 0.642 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.771 3.282 2.427 10.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 C -0.205 4.205 4 C -0.072 4.072 5 H 0.082 0.918 6 C -0.155 4.155 7 C -0.144 4.144 8 C -0.114 4.114 9 H 0.085 0.915 10 C -0.202 4.202 11 C -0.166 4.166 12 C 0.185 3.815 13 O -0.362 6.362 14 C -0.571 4.571 15 H 0.097 0.903 16 C -0.147 4.147 17 N -0.524 5.524 18 Si 0.777 3.223 19 H -0.239 1.239 20 H -0.265 1.265 21 H -0.174 1.174 22 H 0.030 0.970 23 H 0.062 0.938 24 H 0.123 0.877 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.209 0.791 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.769 3.822 2.283 10.736 hybrid contribution 0.191 -0.869 -0.504 1.022 sum 9.960 2.954 1.779 10.540 Atomic orbital electron populations 1.22336 0.94417 1.03430 0.99861 1.20923 0.96862 0.93219 0.98576 1.21999 1.00066 0.98032 1.00425 1.21178 0.92760 0.95948 0.97349 0.91827 1.21691 0.97407 0.98687 0.97725 1.21525 0.98929 0.95619 0.98372 1.21186 0.97533 0.95270 0.97384 0.91479 1.21843 0.99812 1.00164 0.98379 1.22379 0.92535 1.00883 1.00842 1.19341 0.92335 0.88956 0.80833 1.86652 1.80342 1.24550 1.44667 1.21158 0.89707 1.33929 1.12290 0.90285 1.25174 0.95490 0.94608 0.99403 1.70031 1.13111 1.36360 1.32885 0.85918 0.77131 0.77797 0.81425 1.23926 1.26522 1.17447 0.96956 0.93836 0.87723 0.91348 0.93438 0.93916 0.93595 0.91866 0.93135 0.93409 0.92800 0.93157 0.93171 0.93663 0.92755 0.92236 0.79105 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 7.77 37.16 0.29 -2.89 16 2 C -0.08 -1.56 2.42 -90.62 -0.22 -1.78 16 3 C -0.15 -2.47 8.62 37.16 0.32 -2.15 16 4 C -0.05 -1.06 1.30 -90.62 -0.12 -1.18 16 5 H 0.06 1.29 8.04 -51.93 -0.42 0.87 16 6 C -0.12 -2.02 4.57 -26.73 -0.12 -2.14 16 7 C -0.11 -1.67 5.20 -26.73 -0.14 -1.81 16 8 C -0.10 -1.57 2.58 -90.61 -0.23 -1.81 16 9 H 0.07 1.16 7.68 -51.93 -0.40 0.76 16 10 C -0.14 -2.03 9.19 37.16 0.34 -1.69 16 11 C -0.13 -2.51 4.13 -26.70 -0.11 -2.62 16 12 C 0.22 4.90 0.59 -91.74 -0.05 4.85 16 13 O -0.55 -12.17 6.25 -35.23 -0.22 -12.39 16 14 C -0.53 -13.75 5.53 -34.44 -0.19 -13.94 16 15 H 0.08 2.26 7.73 -52.48 -0.41 1.85 16 16 C 0.06 1.50 4.07 -17.82 -0.07 1.43 16 17 N -0.89 -25.99 13.96 55.43 0.77 -25.21 16 18 Si 0.94 22.79 23.47 -169.99 -3.99 18.80 16 19 H -0.31 -7.19 6.64 56.52 0.38 -6.81 16 20 H -0.33 -8.50 7.11 56.52 0.40 -8.10 16 21 H -0.25 -5.94 4.88 56.52 0.28 -5.66 16 22 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 23 H 0.04 0.96 7.46 -51.93 -0.39 0.58 16 24 H 0.10 2.63 3.38 -51.93 -0.18 2.46 16 25 H 0.07 1.51 6.39 -51.93 -0.33 1.18 16 26 H 0.05 0.73 6.35 -51.93 -0.33 0.40 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 30 H 0.05 0.79 6.34 -51.93 -0.33 0.46 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.36 7.74 5.40 45.56 0.25 7.99 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 274.33 15.07 4.13 4.13 Total: -1.00 -27.51 274.33 -6.05 -33.56 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.44 Total: 6.85 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -0.31 Total: -25.74 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.77 Total: -25.21 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.22 Total: -12.39 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -3.99 Total: 18.80 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.51 -6.05 -33.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.172 kcal (2) G-P(sol) polarization free energy of solvation -27.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds