Wall clock time and date at job start Mon Mar 30 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47064 * 2 1 4 4 C 1.53000 * 109.47311 * 120.00003 * 2 1 3 5 5 H 1.08994 * 109.47208 * 305.06662 * 4 2 1 6 6 C 1.53000 * 109.47142 * 185.06445 * 4 2 1 7 7 C 1.53000 * 109.47142 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47118 * 60.00346 * 7 6 4 9 9 H 1.08994 * 109.47699 * 59.99740 * 8 7 6 10 10 C 1.53005 * 109.47302 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.47124 * 299.99793 * 8 7 6 12 12 C 1.52998 * 109.47118 * 65.06791 * 4 2 1 13 13 O 1.42894 * 109.47380 * 59.99763 * 12 4 2 14 14 C 1.50703 * 109.47033 * 299.99887 * 12 4 2 15 15 H 1.08006 * 119.99901 * 305.43056 * 14 12 4 16 16 C 1.37873 * 120.00134 * 125.42441 * 14 12 4 17 17 N 1.31512 * 120.00188 * 163.73012 * 16 14 12 18 18 Si 1.86806 * 120.00118 * 343.73376 * 16 14 12 19 19 H 1.48491 * 109.47187 * 87.67336 * 18 16 14 20 20 H 1.48500 * 109.46946 * 207.67728 * 18 16 14 21 21 H 1.48504 * 109.46757 * 327.67192 * 18 16 14 22 22 H 1.09002 * 109.47548 * 42.01086 * 1 2 3 23 23 H 1.09000 * 109.47146 * 282.00609 * 1 2 3 24 24 H 1.09007 * 109.46851 * 162.00880 * 1 2 3 25 25 H 1.09000 * 109.47384 * 240.00388 * 2 1 3 26 26 H 1.09005 * 109.47257 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47056 * 299.99878 * 3 2 1 28 28 H 1.09001 * 109.47215 * 60.00070 * 3 2 1 29 29 H 1.09004 * 109.47288 * 300.00198 * 6 4 2 30 30 H 1.09000 * 109.47178 * 60.00447 * 6 4 2 31 31 H 1.09001 * 109.46968 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47191 * 300.00258 * 7 6 4 33 33 H 1.08994 * 109.47344 * 59.99047 * 10 8 7 34 34 H 1.09000 * 109.46902 * 179.97438 * 10 8 7 35 35 H 1.09001 * 109.46488 * 299.99443 * 10 8 7 36 36 H 1.08997 * 109.47752 * 180.02562 * 11 8 7 37 37 H 1.09004 * 109.47220 * 300.00875 * 11 8 7 38 38 H 0.96699 * 114.00254 * 174.10486 * 13 12 4 39 39 H 0.97002 * 120.00705 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6045 -0.2625 2.1369 6 6 3.5647 -0.6119 1.3145 7 6 4.0747 -1.3326 2.5640 8 6 3.6714 -2.8072 2.5026 9 1 4.1068 -3.2664 1.6152 10 6 4.1808 -3.5278 3.7525 11 6 2.1466 -2.9166 2.4374 12 6 1.6367 -2.1958 1.1871 13 8 2.2076 -2.7972 0.0234 14 6 0.1349 -2.3036 1.1229 15 1 -0.4735 -1.8252 1.8761 16 6 -0.4623 -3.0127 0.1024 17 7 -1.7203 -3.3815 0.2065 18 14 0.5155 -3.4499 -1.4281 19 1 1.2212 -4.7387 -1.2133 20 1 -0.4067 -3.5771 -2.5851 21 1 1.5093 -2.3811 -1.7025 22 1 -0.3634 0.7636 -0.6878 23 1 -0.3633 0.2138 1.0052 24 1 -0.3633 -0.9775 -0.3174 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 4.0002 -1.0706 0.4268 30 1 3.8521 0.4386 1.3588 31 1 5.1609 -1.2550 2.6103 32 1 3.6391 -0.8734 3.4515 33 1 3.7451 -3.0685 4.6397 34 1 3.8931 -4.5782 3.7089 35 1 5.2670 -3.4499 3.7993 36 1 1.8592 -3.9671 2.3941 37 1 1.7111 -2.4573 3.3248 38 1 2.0689 -3.7525 -0.0339 39 1 -2.1405 -3.8808 -0.5113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:03 Heat of formation + Delta-G solvation = -75.619305 kcal Electronic energy + Delta-G solvation = -17787.518839 eV Core-core repulsion = 15308.096444 eV Total energy + Delta-G solvation = -2479.422395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98045 -36.77873 -36.45026 -34.37917 -31.74563 -31.12107 -28.10118 -26.89515 -26.54269 -23.05137 -22.19112 -20.75223 -20.44347 -18.83382 -17.68367 -16.80765 -16.47101 -15.48335 -14.95106 -14.83428 -14.52739 -14.31493 -14.25141 -13.85958 -13.57523 -13.33589 -12.99528 -12.89638 -12.67771 -12.58863 -12.33506 -11.91350 -11.82332 -11.81352 -11.66349 -11.41734 -11.18483 -11.14567 -10.75515 -10.57354 -10.06709 -9.71668 -8.24217 -6.12938 1.30453 1.57692 1.82203 2.44916 3.07113 3.59701 3.93866 4.06707 4.09644 4.27752 4.32397 4.43263 4.59259 4.71907 4.76739 4.84384 4.90175 4.93219 4.96383 5.03757 5.09662 5.14674 5.15709 5.25871 5.27176 5.30746 5.37112 5.43574 5.51052 5.61302 5.65936 5.74125 5.77324 5.88015 6.02538 6.23806 6.69654 6.83126 7.41783 8.89527 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.014845 C = 0.011087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.500045 B = 1885.661548 C = 2524.986471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.077 4.077 3 C -0.140 4.140 4 C -0.053 4.053 5 H 0.057 0.943 6 C -0.111 4.111 7 C -0.105 4.105 8 C -0.091 4.091 9 H 0.063 0.937 10 C -0.140 4.140 11 C -0.125 4.125 12 C 0.219 3.781 13 O -0.548 6.548 14 C -0.517 4.517 15 H 0.039 0.961 16 C 0.010 3.990 17 N -0.939 5.939 18 Si 0.992 3.008 19 H -0.290 1.290 20 H -0.352 1.352 21 H -0.240 1.240 22 H 0.026 0.974 23 H 0.030 0.970 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.052 0.948 38 H 0.359 0.641 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.963 4.193 2.705 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 C -0.198 4.198 4 C -0.071 4.071 5 H 0.075 0.925 6 C -0.149 4.149 7 C -0.142 4.142 8 C -0.109 4.109 9 H 0.082 0.918 10 C -0.198 4.198 11 C -0.163 4.163 12 C 0.180 3.820 13 O -0.360 6.360 14 C -0.555 4.555 15 H 0.057 0.943 16 C -0.187 4.187 17 N -0.578 5.578 18 Si 0.830 3.170 19 H -0.219 1.219 20 H -0.288 1.288 21 H -0.166 1.166 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.211 0.789 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.995 4.735 2.581 14.070 hybrid contribution -0.881 -1.105 -0.524 1.507 sum 12.114 3.631 2.057 12.813 Atomic orbital electron populations 1.22220 0.96476 1.01956 0.99232 1.20899 0.95027 0.95766 0.97899 1.21910 1.01286 0.95225 1.01331 1.21111 0.95314 0.93813 0.96911 0.92512 1.21638 0.94504 1.00421 0.98305 1.21535 1.00672 0.94334 0.97670 1.21133 0.94449 0.96684 0.98641 0.91829 1.21793 1.01229 0.99736 0.96999 1.22247 0.95508 0.99460 0.99075 1.19397 0.89748 0.91018 0.81837 1.86619 1.79786 1.24750 1.44847 1.21323 0.91960 1.31870 1.10379 0.94272 1.25800 0.95986 0.95055 1.01833 1.70156 1.15089 1.38806 1.33772 0.84979 0.75625 0.78537 0.77817 1.21854 1.28768 1.16639 0.95469 0.95107 0.91046 0.93056 0.91400 0.93000 0.92810 0.92540 0.90803 0.90582 0.92317 0.92821 0.93279 0.91346 0.94152 0.92929 0.78938 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.31 7.77 71.98 0.56 -5.75 16 2 C -0.08 -3.00 2.42 -10.79 -0.03 -3.03 16 3 C -0.14 -4.24 8.62 71.98 0.62 -3.62 16 4 C -0.05 -2.00 1.30 -10.79 -0.01 -2.02 16 5 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 6 C -0.11 -3.41 4.57 30.59 0.14 -3.27 16 7 C -0.10 -2.84 5.20 30.59 0.16 -2.68 16 8 C -0.09 -2.73 2.58 -10.79 -0.03 -2.75 16 9 H 0.06 1.98 7.68 -2.39 -0.02 1.97 16 10 C -0.14 -3.46 9.19 71.98 0.66 -2.80 16 11 C -0.12 -4.78 4.13 30.61 0.13 -4.65 16 12 C 0.22 9.46 0.59 -11.52 -0.01 9.45 16 13 O -0.55 -23.46 6.25 -148.98 -0.93 -24.39 16 14 C -0.52 -27.48 5.53 25.60 0.14 -27.34 16 15 H 0.04 2.35 7.73 -2.91 -0.02 2.33 16 16 C 0.01 0.55 4.07 84.65 0.34 0.90 16 17 N -0.94 -57.42 13.96 21.45 0.30 -57.12 16 18 Si 0.99 47.73 23.47 68.60 1.61 49.34 16 19 H -0.29 -12.86 6.64 99.48 0.66 -12.20 16 20 H -0.35 -18.10 7.11 99.48 0.71 -17.39 16 21 H -0.24 -11.14 4.88 99.48 0.49 -10.65 16 22 H 0.03 1.08 8.01 -2.39 -0.02 1.06 16 23 H 0.03 1.39 7.46 -2.39 -0.02 1.37 16 24 H 0.07 3.68 3.38 -2.38 -0.01 3.67 16 25 H 0.05 2.17 6.39 -2.39 -0.02 2.16 16 26 H 0.07 1.78 6.35 -2.38 -0.02 1.77 16 27 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.83 7.68 -2.39 -0.02 1.81 16 30 H 0.07 1.94 6.34 -2.39 -0.02 1.93 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.36 15.02 5.40 -74.06 -0.40 14.62 16 39 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -60.91 274.33 3.99 -56.91 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.34 Total: 22.82 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 2.68 Total: -47.57 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.30 Total: -57.12 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.93 Total: -24.39 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.61 Total: 49.34 kcal Total: -60.91 3.99 -56.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.708 kcal (2) G-P(sol) polarization free energy of solvation -60.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds