Wall clock time and date at job start Mon Mar 30 2020 03:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46957 * 2 1 4 4 C 1.52995 * 109.47102 * 120.00627 * 2 1 3 5 5 N 1.46902 * 109.46947 * 176.67366 * 4 2 1 6 6 C 1.46902 * 111.00122 * 164.50717 * 5 4 2 7 7 C 1.50703 * 109.47252 * 293.95482 * 6 5 4 8 8 H 1.08004 * 119.99588 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00238 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99576 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99996 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47108 * 90.00111 * 11 9 7 13 13 H 1.48496 * 109.47172 * 210.00180 * 11 9 7 14 14 H 1.48500 * 109.47072 * 330.00317 * 11 9 7 15 15 C 1.46906 * 110.99814 * 288.45962 * 5 4 2 16 16 H 1.09000 * 110.26783 * 53.72147 * 15 5 4 17 17 C 1.54591 * 110.30686 * 291.52517 * 15 5 4 18 18 C 1.54938 * 102.91991 * 219.12724 * 17 15 5 19 19 N 1.48527 * 103.22586 * 37.41683 * 18 17 15 20 20 C 1.47892 * 105.82333 * 320.79202 * 19 18 17 21 21 H 1.09000 * 109.47012 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46939 * 59.99520 * 1 2 3 23 23 H 1.08996 * 109.46660 * 299.99655 * 1 2 3 24 24 H 1.09004 * 109.46997 * 240.00362 * 2 1 3 25 25 H 1.08996 * 109.47155 * 60.00648 * 3 2 1 26 26 H 1.08998 * 109.46827 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47246 * 299.99988 * 3 2 1 28 28 H 1.09003 * 109.46823 * 296.66677 * 4 2 1 29 29 H 1.08999 * 109.47647 * 56.66932 * 4 2 1 30 30 H 1.09006 * 109.46886 * 53.95135 * 6 5 4 31 31 H 1.08993 * 109.47379 * 173.95353 * 6 5 4 32 32 H 0.97003 * 119.99586 * 179.97438 * 10 9 7 33 33 H 1.08994 * 110.72713 * 337.48718 * 17 15 5 34 34 H 1.09007 * 110.72183 * 100.77201 * 17 15 5 35 35 H 1.09002 * 110.66736 * 278.98160 * 18 17 15 36 36 H 1.09001 * 110.80650 * 155.92455 * 18 17 15 37 37 H 1.00903 * 111.00011 * 81.30957 * 19 18 17 38 38 H 1.09001 * 109.92136 * 265.97903 * 20 19 18 39 39 H 1.08999 * 110.08616 * 144.77251 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5069 -0.7913 1.2096 6 6 4.0533 -1.1348 2.5292 7 6 3.7738 -0.0132 3.4961 8 1 3.2437 0.8670 3.1635 9 6 4.1949 -0.1107 4.8054 10 7 4.8400 -1.1827 5.2105 11 14 3.8491 1.2799 6.0037 12 1 2.5413 1.0475 6.6677 13 1 4.9227 1.3289 7.0284 14 1 3.8083 2.5690 5.2676 15 6 3.9611 -1.7438 0.1875 16 1 3.5164 -1.5023 -0.7779 17 6 3.5985 -3.1884 0.6015 18 6 4.8422 -3.9986 0.1572 19 7 5.9705 -3.0799 0.4554 20 6 5.4977 -1.7278 0.0873 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.7263 -0.1742 2.1381 29 1 1.6288 -1.7303 1.2794 30 1 3.5843 -2.0505 2.8895 31 1 5.1298 -1.2853 2.4487 32 1 5.1366 -1.2511 6.1315 33 1 3.4587 -3.2570 1.6802 34 1 2.7076 -3.5289 0.0736 35 1 4.7970 -4.2189 -0.9094 36 1 4.9319 -4.9184 0.7352 37 1 6.2225 -3.1216 1.4316 38 1 5.8008 -1.4933 -0.9331 39 1 5.9069 -0.9880 0.7753 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086432569.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:10 Heat of formation + Delta-G solvation = -4.702947 kcal Electronic energy + Delta-G solvation = -16882.189239 eV Core-core repulsion = 14438.134760 eV Total energy + Delta-G solvation = -2444.054480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.09640 -36.12408 -33.69495 -32.22152 -28.90094 -28.06980 -26.81163 -26.61450 -24.19874 -21.92339 -21.32672 -19.99134 -18.24049 -16.65576 -15.91729 -15.47547 -14.53017 -14.38221 -14.01064 -13.72717 -13.62115 -13.11793 -12.35107 -12.30364 -11.85807 -11.83511 -11.64179 -11.32102 -11.15240 -10.98207 -10.80573 -10.74954 -10.57133 -10.53654 -10.44840 -10.07016 -9.96434 -9.51936 -9.19827 -8.44946 -8.21537 -7.17167 -6.05435 -4.05837 3.29470 3.36341 3.40414 4.39764 4.66458 4.86741 5.21603 5.28127 5.30175 5.39968 5.50126 5.57054 5.71968 5.81962 5.90016 5.97639 6.03555 6.08023 6.15447 6.21283 6.27951 6.32433 6.43320 6.49055 6.57634 6.59028 6.61223 6.89070 6.93455 7.16104 7.27358 7.38174 7.74144 7.80989 8.09328 8.21293 8.55607 9.02161 9.58323 11.05244 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.018152 B = 0.011007 C = 0.007643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.168656 B = 2543.225619 C = 3662.568866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.133 4.133 4 C 0.067 3.933 5 N -0.524 5.524 6 C 0.191 3.809 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.056 3.944 16 H 0.074 0.926 17 C -0.196 4.196 18 C 0.047 3.953 19 N -0.678 5.678 20 C 0.047 3.953 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.018 0.982 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.342 0.658 38 H 0.068 0.932 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.282 -1.287 -9.630 10.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.190 4.190 4 C -0.062 4.062 5 N -0.247 5.247 6 C 0.066 3.934 7 C -0.545 4.545 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.723 3.277 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.055 4.055 16 H 0.092 0.908 17 C -0.236 4.236 18 C -0.083 4.083 19 N -0.305 5.305 20 C -0.083 4.083 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.036 0.964 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.158 0.842 38 H 0.086 0.914 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.580 -1.012 -10.191 10.849 hybrid contribution -1.214 0.011 1.734 2.117 sum -4.794 -1.001 -8.457 9.773 Atomic orbital electron populations 1.21814 0.96218 1.00977 1.01257 1.21120 0.94149 0.97280 0.98532 1.21657 1.02565 0.94949 0.99822 1.22035 0.88606 0.97633 0.97876 1.62302 1.07816 1.46519 1.08033 1.19754 0.95175 0.95281 0.83200 1.21169 1.36185 1.03488 0.93648 0.91894 1.24966 0.95332 0.95906 0.98322 1.69945 1.38976 1.27663 1.17148 0.86546 0.77773 0.82623 0.80788 1.20840 1.21279 1.19771 1.22984 0.96299 0.89578 0.96610 0.90752 1.23825 0.98794 0.98038 1.02973 1.22949 0.89009 0.95734 1.00598 1.62775 1.35838 1.05538 1.26351 1.22753 0.92991 0.91199 1.01356 0.93382 0.93286 0.92733 0.92300 0.93198 0.91217 0.94613 0.89828 0.96371 0.99100 0.95013 0.92974 0.90050 0.92115 0.91057 0.91547 0.84238 0.91405 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.19 37.16 0.34 -1.60 16 2 C -0.09 -1.43 2.92 -90.62 -0.26 -1.70 16 3 C -0.13 -2.09 9.07 37.16 0.34 -1.75 16 4 C 0.07 1.26 4.12 -3.83 -0.02 1.25 16 5 N -0.52 -10.65 3.80 -226.45 -0.86 -11.51 16 6 C 0.19 4.70 3.86 -4.97 -0.02 4.68 16 7 C -0.51 -13.78 8.29 -34.44 -0.29 -14.06 16 8 H 0.06 1.71 7.25 -52.48 -0.38 1.33 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 11 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.06 0.99 2.96 -66.35 -0.20 0.79 16 16 H 0.07 1.23 6.48 -51.93 -0.34 0.89 16 17 C -0.20 -3.28 5.35 -24.87 -0.13 -3.42 16 18 C 0.05 0.72 7.55 -1.90 -0.01 0.70 16 19 N -0.68 -11.43 7.51 -110.09 -0.83 -12.26 16 20 C 0.05 0.82 6.49 -2.76 -0.02 0.80 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.90 6.54 -51.93 -0.34 0.56 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.78 6.59 -51.93 -0.34 1.44 16 29 H 0.02 0.34 7.13 -51.93 -0.37 -0.03 16 30 H -0.01 -0.23 6.25 -51.93 -0.32 -0.55 16 31 H 0.03 0.83 6.04 -51.93 -0.31 0.52 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.08 1.61 5.66 -51.93 -0.29 1.32 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.34 6.15 8.79 -39.29 -0.35 5.81 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.65 6.58 -51.93 -0.34 1.31 16 LS Contribution 297.31 15.07 4.48 4.48 Total: -1.00 -27.59 297.31 -8.58 -36.17 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.73 Total: 4.85 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.37 Total: -12.83 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.95 Total: -49.08 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.59 -8.58 -36.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432569.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.466 kcal (2) G-P(sol) polarization free energy of solvation -27.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds