Wall clock time and date at job start Mon Mar 30 2020 03:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46896 * 2 1 4 4 C 1.52994 * 109.47282 * 119.99928 * 2 1 3 5 5 N 1.46897 * 109.47315 * 178.78988 * 4 2 1 6 6 C 1.46896 * 111.00203 * 169.02496 * 5 4 2 7 7 C 1.50701 * 109.47275 * 195.90149 * 6 5 4 8 8 H 1.08000 * 119.99865 * 5.01946 * 7 6 5 9 9 C 1.37882 * 120.00201 * 185.01477 * 7 6 5 10 10 N 1.31519 * 119.99863 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00138 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47020 * 60.00142 * 11 9 7 13 13 H 1.48495 * 109.47229 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47191 * 300.00522 * 11 9 7 15 15 C 1.46897 * 110.99944 * 292.97993 * 5 4 2 16 16 H 1.08999 * 110.90380 * 210.30463 * 15 5 4 17 17 C 1.55390 * 111.02935 * 334.04556 * 15 5 4 18 18 C 1.54314 * 102.90337 * 153.63333 * 17 15 5 19 19 N 1.47443 * 107.37235 * 337.90074 * 18 17 15 20 20 C 1.47849 * 108.56613 * 358.92373 * 19 18 17 21 21 H 1.09000 * 109.47082 * 299.99767 * 1 2 3 22 22 H 1.08994 * 109.47667 * 60.00291 * 1 2 3 23 23 H 1.09005 * 109.47202 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47082 * 240.00233 * 2 1 3 25 25 H 1.09000 * 109.47065 * 60.00222 * 3 2 1 26 26 H 1.09001 * 109.47309 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47225 * 299.99837 * 3 2 1 28 28 H 1.09001 * 109.47479 * 58.78902 * 4 2 1 29 29 H 1.09008 * 109.47507 * 298.79116 * 4 2 1 30 30 H 1.09009 * 109.47189 * 315.90095 * 6 5 4 31 31 H 1.08998 * 109.47608 * 75.90290 * 6 5 4 32 32 H 0.96994 * 119.99829 * 179.97438 * 10 9 7 33 33 H 1.09005 * 110.67825 * 35.32926 * 17 15 5 34 34 H 1.09003 * 110.84906 * 272.01976 * 17 15 5 35 35 H 1.09002 * 109.89269 * 218.40738 * 18 17 15 36 36 H 1.09008 * 109.88660 * 97.38359 * 18 17 15 37 37 H 1.00901 * 111.00091 * 236.66053 * 19 18 17 38 38 H 1.08996 * 110.37724 * 142.92472 * 20 19 18 39 39 H 1.09000 * 110.37677 * 265.27321 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5087 -0.7466 1.2347 6 6 4.0404 -1.1936 2.5290 7 6 5.5033 -0.8433 2.6192 8 1 5.9703 -0.2681 1.8334 9 6 6.2456 -1.2571 3.7050 10 7 5.6771 -1.9579 4.6617 11 14 8.0592 -0.8235 3.8165 12 1 8.2159 0.6532 3.8165 13 1 8.6255 -1.3818 5.0705 14 1 8.7780 -1.3975 2.6506 15 6 4.0098 -1.5889 0.1405 16 1 4.9649 -2.0427 0.4051 17 6 2.9693 -2.6756 -0.2482 18 6 3.3079 -2.9641 -1.7258 19 7 4.0274 -1.7888 -2.2502 20 6 4.1260 -0.7789 -1.1749 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6591 -1.7424 1.2602 29 1 1.6945 -0.1950 2.1391 30 1 3.4980 -0.6991 3.3350 31 1 3.9192 -2.2731 2.6184 32 1 6.1994 -2.2492 5.4253 33 1 1.9548 -2.2883 -0.1538 34 1 3.0989 -3.5715 0.3590 35 1 2.3903 -3.1206 -2.2928 36 1 3.9418 -3.8482 -1.7952 37 1 3.5596 -1.4101 -3.0600 38 1 5.0872 -0.2672 -1.2218 39 1 3.3090 -0.0614 -1.2520 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086432570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:12 Heat of formation + Delta-G solvation = 12.296940 kcal Electronic energy + Delta-G solvation = -16971.884160 eV Core-core repulsion = 14528.566851 eV Total energy + Delta-G solvation = -2443.317309 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45205 -35.78981 -34.10033 -32.21811 -29.14659 -28.14124 -27.07131 -26.76008 -24.30982 -21.73228 -20.93291 -19.88876 -19.13808 -16.42104 -16.05953 -15.71494 -14.66652 -14.37259 -14.09266 -13.75458 -13.32784 -12.77705 -12.73303 -12.36769 -12.30953 -11.88656 -11.61317 -11.46892 -11.19116 -10.98433 -10.91755 -10.80896 -10.68177 -10.38559 -10.29045 -10.21741 -9.77173 -9.67035 -9.20078 -8.40531 -8.06930 -7.19017 -6.00073 -4.01407 3.36184 3.39657 3.43258 4.41463 4.53740 4.88505 5.09459 5.15742 5.23897 5.34420 5.37247 5.44776 5.59866 5.79449 5.82773 5.84910 5.93185 5.98601 6.07143 6.14014 6.19653 6.22935 6.30053 6.36465 6.43469 6.58463 6.71536 6.79227 6.84160 7.13868 7.28236 7.37737 7.64232 7.86309 8.12796 8.22299 8.57178 9.07278 9.63043 11.10229 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026725 B = 0.008490 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.439669 B = 3297.202564 C = 3714.457744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.138 4.138 4 C 0.053 3.947 5 N -0.522 5.522 6 C 0.194 3.806 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.091 3.909 16 H 0.097 0.903 17 C -0.188 4.188 18 C 0.052 3.948 19 N -0.687 5.687 20 C 0.036 3.964 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.065 0.935 30 H 0.025 0.975 31 H -0.005 1.005 32 H 0.261 0.739 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.330 0.670 38 H 0.075 0.925 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.416 1.571 -10.682 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.195 4.195 4 C -0.076 4.076 5 N -0.245 5.245 6 C 0.069 3.931 7 C -0.543 4.543 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.020 4.020 16 H 0.115 0.885 17 C -0.228 4.228 18 C -0.077 4.077 19 N -0.316 5.316 20 C -0.092 4.092 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.013 0.987 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.145 0.855 38 H 0.093 0.907 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.542 1.701 -10.459 13.006 hybrid contribution -0.247 -0.416 0.431 0.648 sum -7.788 1.285 -10.028 12.762 Atomic orbital electron populations 1.21838 0.96152 1.01060 1.01367 1.21465 0.94255 0.97494 0.99051 1.21747 1.02919 0.94792 1.00024 1.22267 0.90150 0.97948 0.97222 1.62069 1.05010 1.51566 1.05865 1.19740 0.95383 0.93930 0.84037 1.21131 0.93906 1.33504 1.05739 0.91869 1.24989 0.98620 0.95253 0.95764 1.69951 1.36405 1.37647 1.09994 0.86575 0.84998 0.78758 0.77181 1.20198 1.21443 1.20243 1.22741 0.98172 0.90260 0.90801 0.88481 1.23721 1.01718 1.01051 0.96266 1.22458 0.95991 0.94773 0.94498 1.61842 1.53770 1.07864 1.08110 1.23326 1.01886 0.93995 0.90028 0.92771 0.93137 0.93309 0.90761 0.93181 0.90687 0.94360 0.94988 0.91634 0.95698 0.98681 0.92941 0.89934 0.91366 0.93998 0.91342 0.85518 0.90673 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.19 37.16 0.34 -1.41 16 2 C -0.10 -1.49 1.78 -90.62 -0.16 -1.65 16 3 C -0.14 -1.97 8.21 37.16 0.31 -1.67 16 4 C 0.05 0.92 3.88 -3.83 -0.01 0.91 16 5 N -0.52 -10.83 3.73 -225.37 -0.84 -11.67 16 6 C 0.19 4.99 4.66 -4.98 -0.02 4.96 16 7 C -0.50 -14.09 8.39 -34.44 -0.29 -14.38 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 11 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.09 1.74 2.88 -65.44 -0.19 1.55 16 16 H 0.10 2.21 7.17 -51.93 -0.37 1.84 16 17 C -0.19 -3.08 5.21 -24.77 -0.13 -3.21 16 18 C 0.05 0.75 7.57 -2.84 -0.02 0.73 16 19 N -0.69 -10.11 7.39 -110.78 -0.82 -10.93 16 20 C 0.04 0.60 6.39 -2.29 -0.01 0.59 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 1.07 4.19 -51.93 -0.22 0.85 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.22 6.66 -51.93 -0.35 0.88 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.03 0.56 5.75 -51.93 -0.30 0.26 16 29 H 0.07 1.20 7.84 -51.92 -0.41 0.79 16 30 H 0.02 0.68 7.80 -51.92 -0.40 0.28 16 31 H 0.00 -0.13 8.05 -51.93 -0.42 -0.55 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.08 1.28 4.16 -51.93 -0.22 1.06 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.33 4.06 8.91 -39.29 -0.35 3.71 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 0.99 3.35 -51.93 -0.17 0.81 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -28.76 292.18 -8.39 -37.15 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.55 Total: 2.38 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -0.29 Total: -12.12 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.92 Total: -48.66 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.76 -8.39 -37.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.448 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds