Wall clock time and date at job start Mon Mar 30 2020 03:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47282 * 2 1 4 4 C 1.53000 * 109.47553 * 183.16395 * 3 2 1 5 5 C 1.52998 * 109.47475 * 173.52200 * 4 3 2 6 6 N 1.46904 * 109.47097 * 63.16090 * 3 2 1 7 7 C 1.46901 * 111.00007 * 200.65454 * 6 3 2 8 8 C 1.53245 * 109.33599 * 172.74561 * 7 6 3 9 9 N 1.47077 * 108.51878 * 53.83092 * 8 7 6 10 10 C 1.36943 * 120.87835 * 128.79067 * 9 8 7 11 11 H 1.08004 * 119.99952 * 201.49039 * 10 9 8 12 12 C 1.38817 * 120.00131 * 21.49393 * 10 9 8 13 13 N 1.31620 * 119.99586 * 24.84460 * 12 10 9 14 14 Si 1.86791 * 120.00008 * 204.84527 * 12 10 9 15 15 H 1.48499 * 109.47015 * 94.99350 * 14 12 10 16 16 H 1.48501 * 109.46895 * 214.98978 * 14 12 10 17 17 H 1.48506 * 109.47305 * 334.99042 * 14 12 10 18 18 C 1.47078 * 118.24205 * 308.81137 * 9 8 7 19 19 C 1.46898 * 110.99692 * 76.35126 * 6 3 2 20 20 H 1.08996 * 109.46866 * 304.38196 * 1 2 3 21 21 H 1.09001 * 109.47327 * 64.38242 * 1 2 3 22 22 H 1.09003 * 109.47288 * 184.37987 * 1 2 3 23 23 H 1.09005 * 109.47128 * 240.00321 * 2 1 3 24 24 H 1.08997 * 109.47244 * 120.00266 * 2 1 3 25 25 H 1.09003 * 109.47212 * 303.16412 * 3 2 1 26 26 H 1.09004 * 109.46729 * 293.51797 * 4 3 2 27 27 H 1.08999 * 109.47055 * 53.51419 * 4 3 2 28 28 H 1.08995 * 109.47409 * 82.96345 * 5 4 3 29 29 H 1.09007 * 109.46924 * 202.96754 * 5 4 3 30 30 H 1.09003 * 109.46752 * 322.96206 * 5 4 3 31 31 H 1.08997 * 109.49510 * 292.70402 * 7 6 3 32 32 H 1.09000 * 109.48807 * 52.78884 * 7 6 3 33 33 H 1.08999 * 109.62975 * 294.12189 * 8 7 6 34 34 H 1.09002 * 109.62241 * 173.53725 * 8 7 6 35 35 H 0.97001 * 119.99729 * 180.02562 * 13 12 10 36 36 H 1.08992 * 109.62644 * 291.47755 * 18 9 8 37 37 H 1.09000 * 109.79052 * 170.98454 * 18 9 8 38 38 H 1.08996 * 109.49875 * 307.21970 * 19 6 3 39 39 H 1.09009 * 109.49302 * 67.29774 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5679 1.4432 -0.0796 5 6 4.0695 2.8795 -0.2423 6 7 1.6137 2.1126 1.2358 7 6 1.6394 3.5729 1.0786 8 6 1.0196 4.2276 2.3178 9 7 1.7123 3.7183 3.5111 10 6 2.2186 4.5770 4.4500 11 1 3.0014 4.2472 5.1171 12 6 1.7257 5.8712 4.5445 13 7 0.5084 6.1440 4.1247 14 14 2.7899 7.2255 5.2673 15 1 3.4834 7.9483 4.1710 16 1 1.9355 8.1758 6.0238 17 1 3.7967 6.6292 6.1817 18 6 1.8474 2.2622 3.6690 19 6 2.4344 1.6848 2.3766 20 1 -0.3633 0.5803 0.8481 21 1 -0.3634 0.4443 -0.9266 22 1 -0.3634 -1.0247 0.0785 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6311 1.9724 -0.8603 26 1 3.9796 1.0161 0.8349 27 1 3.8875 0.8477 -0.9347 28 1 4.1226 3.3587 0.7352 29 1 5.0605 2.8691 -0.6963 30 1 3.3827 3.4339 -0.8819 31 1 2.6703 3.9087 0.9670 32 1 1.0672 3.8536 0.1943 33 1 -0.0394 3.9760 2.3739 34 1 1.1393 5.3095 2.2588 35 1 0.1641 7.0485 4.1903 36 1 0.8679 1.8218 3.8550 37 1 2.5126 2.0416 4.5038 38 1 2.4391 0.5964 2.4336 39 1 3.4544 2.0469 2.2469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087157223.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:13 Heat of formation + Delta-G solvation = 26.242027 kcal Electronic energy + Delta-G solvation = -17083.984327 eV Core-core repulsion = 14641.271722 eV Total energy + Delta-G solvation = -2442.712605 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.12312 -35.58442 -32.64371 -31.88266 -30.59270 -29.78084 -26.96379 -25.18381 -23.10872 -22.37660 -21.71369 -19.84995 -18.77013 -16.73514 -15.78352 -14.80666 -14.60334 -14.33759 -14.01694 -13.52476 -13.26423 -13.14940 -12.71589 -12.55572 -12.11986 -11.89085 -11.44743 -11.30925 -11.19973 -11.11858 -10.74242 -10.70680 -10.55321 -10.39671 -10.31444 -9.95927 -9.90708 -9.63569 -9.47172 -8.42495 -7.54785 -6.67800 -5.75935 -3.07750 3.40521 3.48436 3.49594 4.47463 4.55977 4.91102 5.21871 5.30209 5.39155 5.45318 5.51397 5.63664 5.67481 5.82616 5.91144 5.98938 6.01715 6.09776 6.13933 6.19467 6.26092 6.29771 6.30564 6.44099 6.52150 6.58779 6.61815 6.68886 6.80580 6.99527 7.32251 7.68442 7.76438 7.81683 7.91172 8.43813 9.24063 9.90466 10.47395 11.32993 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.038287 B = 0.007822 C = 0.007349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.142670 B = 3578.610331 C = 3809.266169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.080 3.920 4 C -0.155 4.155 5 C -0.156 4.156 6 N -0.520 5.520 7 C 0.021 3.979 8 C 0.176 3.824 9 N -0.594 5.594 10 C -0.251 4.251 11 H 0.068 0.932 12 C 0.000 4.000 13 N -0.897 5.897 14 Si 0.894 3.106 15 H -0.289 1.289 16 H -0.292 1.292 17 H -0.280 1.280 18 C 0.149 3.851 19 C 0.042 3.958 20 H 0.072 0.928 21 H 0.044 0.956 22 H 0.041 0.959 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.086 0.914 35 H 0.253 0.747 36 H 0.023 0.977 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 -9.329 -8.972 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.029 4.029 4 C -0.194 4.194 5 C -0.213 4.213 6 N -0.244 5.244 7 C -0.108 4.108 8 C 0.049 3.951 9 N -0.318 5.318 10 C -0.380 4.380 11 H 0.085 0.915 12 C -0.199 4.199 13 N -0.542 5.542 14 Si 0.725 3.275 15 H -0.216 1.216 16 H -0.219 1.219 17 H -0.205 1.205 18 C 0.022 3.978 19 C -0.088 4.088 20 H 0.091 0.909 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.010 -9.300 -8.834 13.175 hybrid contribution 1.334 0.991 0.127 1.667 sum 4.344 -8.309 -8.707 12.795 Atomic orbital electron populations 1.21645 0.95415 1.00492 1.02481 1.21495 0.96694 0.95731 1.00823 1.21867 0.92049 0.95258 0.93761 1.22237 0.97859 0.97400 1.01879 1.22068 1.00107 0.96790 1.02367 1.62115 1.52839 1.07157 1.02322 1.23227 1.00382 0.86833 1.00368 1.20880 0.93420 0.98408 0.82343 1.44175 1.66682 0.99518 1.21390 1.19228 1.13194 0.92707 1.12867 0.91456 1.24835 0.95405 0.99047 1.00590 1.70139 1.13209 1.19479 1.51396 0.86378 0.80214 0.82488 0.78461 1.21639 1.21920 1.20486 1.20962 0.97559 0.85863 0.93414 1.22653 0.95083 0.98288 0.92753 0.90854 0.93704 0.94026 0.92799 0.92250 0.90981 0.91395 0.92517 0.91373 0.93591 0.92688 0.93711 0.92645 0.95971 0.89558 0.93743 0.95947 0.92930 0.92249 0.94876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.84 37.16 0.37 -1.48 16 2 C -0.11 -1.39 5.46 -26.73 -0.15 -1.53 16 3 C 0.08 1.14 1.90 -67.71 -0.13 1.01 16 4 C -0.15 -2.06 4.89 -26.73 -0.13 -2.19 16 5 C -0.16 -2.19 8.22 37.16 0.31 -1.89 16 6 N -0.52 -9.11 3.80 -226.33 -0.86 -9.97 16 7 C 0.02 0.40 4.74 -3.70 -0.02 0.39 16 8 C 0.18 4.29 5.52 -3.60 -0.02 4.27 16 9 N -0.59 -15.18 3.05 -172.01 -0.52 -15.71 16 10 C -0.25 -6.99 9.63 -15.05 -0.15 -7.13 16 11 H 0.07 1.85 7.91 -52.48 -0.42 1.43 16 12 C 0.00 -0.01 4.77 -17.43 -0.08 -0.09 16 13 N -0.90 -26.41 11.31 55.49 0.63 -25.78 16 14 Si 0.89 21.90 29.62 -169.99 -5.04 16.86 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.15 3.21 6.69 -3.60 -0.02 3.19 16 19 C 0.04 0.75 4.28 -3.70 -0.02 0.73 16 20 H 0.07 1.12 7.57 -51.93 -0.39 0.72 16 21 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.77 6.76 -51.93 -0.35 0.42 16 25 H 0.07 1.04 7.60 -51.93 -0.39 0.64 16 26 H 0.07 0.95 6.07 -51.93 -0.32 0.63 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.13 5.41 -51.93 -0.28 0.84 16 29 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.05 0.76 7.28 -51.93 -0.38 0.39 16 31 H 0.04 0.89 4.31 -51.93 -0.22 0.66 16 32 H 0.06 1.01 7.89 -51.93 -0.41 0.60 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 2.33 5.99 -51.93 -0.31 2.02 16 35 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 1.10 7.94 -51.93 -0.41 0.68 16 38 H 0.06 0.95 6.67 -51.93 -0.35 0.60 16 39 H 0.03 0.61 5.66 -51.92 -0.29 0.32 16 LS Contribution 287.41 15.07 4.33 4.33 Total: -1.00 -28.90 287.41 -8.12 -37.02 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.62 Total: -2.01 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -0.04 Total: -4.73 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.76 Total: -51.47 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.04 Total: 16.86 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.90 -8.12 -37.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087157223.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.261 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds