Wall clock time and date at job start Mon Mar 30 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47282 * 2 1 4 4 C 1.53000 * 109.47553 * 183.16395 * 3 2 1 5 5 C 1.52998 * 109.47475 * 173.52200 * 4 3 2 6 6 N 1.46904 * 109.47097 * 63.16090 * 3 2 1 7 7 C 1.46901 * 111.00007 * 200.65454 * 6 3 2 8 8 C 1.53245 * 109.33599 * 172.74561 * 7 6 3 9 9 N 1.47077 * 108.51878 * 53.83092 * 8 7 6 10 10 C 1.36943 * 120.87835 * 128.79067 * 9 8 7 11 11 H 1.08004 * 119.99952 * 201.49039 * 10 9 8 12 12 C 1.38817 * 120.00131 * 21.49393 * 10 9 8 13 13 N 1.31620 * 119.99586 * 24.84460 * 12 10 9 14 14 Si 1.86791 * 120.00008 * 204.84527 * 12 10 9 15 15 H 1.48499 * 109.47015 * 94.99350 * 14 12 10 16 16 H 1.48501 * 109.46895 * 214.98978 * 14 12 10 17 17 H 1.48506 * 109.47305 * 334.99042 * 14 12 10 18 18 C 1.47078 * 118.24205 * 308.81137 * 9 8 7 19 19 C 1.46898 * 110.99692 * 76.35126 * 6 3 2 20 20 H 1.08996 * 109.46866 * 304.38196 * 1 2 3 21 21 H 1.09001 * 109.47327 * 64.38242 * 1 2 3 22 22 H 1.09003 * 109.47288 * 184.37987 * 1 2 3 23 23 H 1.09005 * 109.47128 * 240.00321 * 2 1 3 24 24 H 1.08997 * 109.47244 * 120.00266 * 2 1 3 25 25 H 1.09003 * 109.47212 * 303.16412 * 3 2 1 26 26 H 1.09004 * 109.46729 * 293.51797 * 4 3 2 27 27 H 1.08999 * 109.47055 * 53.51419 * 4 3 2 28 28 H 1.08995 * 109.47409 * 82.96345 * 5 4 3 29 29 H 1.09007 * 109.46924 * 202.96754 * 5 4 3 30 30 H 1.09003 * 109.46752 * 322.96206 * 5 4 3 31 31 H 1.08997 * 109.49510 * 292.70402 * 7 6 3 32 32 H 1.09000 * 109.48807 * 52.78884 * 7 6 3 33 33 H 1.08999 * 109.62975 * 294.12189 * 8 7 6 34 34 H 1.09002 * 109.62241 * 173.53725 * 8 7 6 35 35 H 0.97001 * 119.99729 * 180.02562 * 13 12 10 36 36 H 1.08992 * 109.62644 * 291.47755 * 18 9 8 37 37 H 1.09000 * 109.79052 * 170.98454 * 18 9 8 38 38 H 1.08996 * 109.49875 * 307.21970 * 19 6 3 39 39 H 1.09009 * 109.49302 * 67.29774 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5679 1.4432 -0.0796 5 6 4.0695 2.8795 -0.2423 6 7 1.6137 2.1126 1.2358 7 6 1.6394 3.5729 1.0786 8 6 1.0196 4.2276 2.3178 9 7 1.7123 3.7183 3.5111 10 6 2.2186 4.5770 4.4500 11 1 3.0014 4.2472 5.1171 12 6 1.7257 5.8712 4.5445 13 7 0.5084 6.1440 4.1247 14 14 2.7899 7.2255 5.2673 15 1 3.4834 7.9483 4.1710 16 1 1.9355 8.1758 6.0238 17 1 3.7967 6.6292 6.1817 18 6 1.8474 2.2622 3.6690 19 6 2.4344 1.6848 2.3766 20 1 -0.3633 0.5803 0.8481 21 1 -0.3634 0.4443 -0.9266 22 1 -0.3634 -1.0247 0.0785 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6311 1.9724 -0.8603 26 1 3.9796 1.0161 0.8349 27 1 3.8875 0.8477 -0.9347 28 1 4.1226 3.3587 0.7352 29 1 5.0605 2.8691 -0.6963 30 1 3.3827 3.4339 -0.8819 31 1 2.6703 3.9087 0.9670 32 1 1.0672 3.8536 0.1943 33 1 -0.0394 3.9760 2.3739 34 1 1.1393 5.3095 2.2588 35 1 0.1641 7.0485 4.1903 36 1 0.8679 1.8218 3.8550 37 1 2.5126 2.0416 4.5038 38 1 2.4391 0.5964 2.4336 39 1 3.4544 2.0469 2.2469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087157223.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:12 Heat of formation + Delta-G solvation = 8.774075 kcal Electronic energy + Delta-G solvation = -17084.741794 eV Core-core repulsion = 14641.271722 eV Total energy + Delta-G solvation = -2443.470072 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52883 -37.28726 -34.31691 -33.09508 -32.25255 -31.51685 -28.51855 -26.74300 -24.82549 -24.06571 -22.78680 -21.34832 -20.29299 -18.66762 -17.15716 -16.74410 -16.01271 -15.74756 -15.48522 -15.14156 -15.04110 -14.70043 -14.12331 -13.74975 -13.43413 -13.28072 -13.05568 -12.99634 -12.67153 -12.57476 -12.34040 -12.26389 -12.08295 -11.88548 -11.69769 -11.48319 -11.35235 -11.30361 -11.16513 -10.54322 -9.03472 -8.67120 -7.88983 -5.24468 1.45242 1.47253 1.56523 2.51294 3.10163 3.24142 3.69997 3.82527 4.11860 4.20310 4.38235 4.41640 4.44035 4.53448 4.62420 4.65889 4.70065 4.73612 4.83184 4.90070 4.98205 5.03510 5.10373 5.16604 5.21309 5.23893 5.29116 5.33368 5.44584 5.48410 5.62201 5.65114 5.70223 6.28916 6.38849 6.45844 7.12070 7.85682 8.38642 9.18018 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.038287 B = 0.007822 C = 0.007349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.142670 B = 3578.610331 C = 3809.266169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C 0.079 3.921 4 C -0.149 4.149 5 C -0.154 4.154 6 N -0.528 5.528 7 C 0.037 3.963 8 C 0.183 3.817 9 N -0.611 5.611 10 C -0.263 4.263 11 H 0.069 0.931 12 C -0.052 4.052 13 N -0.932 5.932 14 Si 0.962 3.038 15 H -0.287 1.287 16 H -0.296 1.296 17 H -0.268 1.268 18 C 0.143 3.857 19 C 0.056 3.944 20 H 0.043 0.957 21 H 0.049 0.951 22 H 0.056 0.944 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.068 0.932 33 H -0.009 1.009 34 H 0.054 0.946 35 H 0.250 0.750 36 H 0.011 0.989 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.081 -10.789 -10.247 15.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C -0.029 4.029 4 C -0.188 4.188 5 C -0.211 4.211 6 N -0.252 5.252 7 C -0.092 4.092 8 C 0.057 3.943 9 N -0.335 5.335 10 C -0.393 4.393 11 H 0.086 0.914 12 C -0.247 4.247 13 N -0.578 5.578 14 Si 0.790 3.210 15 H -0.214 1.214 16 H -0.222 1.222 17 H -0.193 1.193 18 C 0.018 3.982 19 C -0.073 4.073 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.009 0.991 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.517 -10.796 -10.117 15.470 hybrid contribution 0.826 1.380 0.525 1.692 sum 5.342 -9.416 -9.592 14.464 Atomic orbital electron populations 1.21604 0.95831 1.00957 1.01415 1.21488 0.96238 0.94435 1.02064 1.21976 0.93087 0.95998 0.91828 1.22188 0.96637 0.97114 1.02847 1.22009 1.01248 0.97105 1.00706 1.62049 1.53468 1.05778 1.03940 1.22908 1.00042 0.88236 0.97991 1.20655 0.92080 0.97054 0.84480 1.44444 1.66629 1.01042 1.21389 1.19560 1.13059 0.93555 1.13131 0.91358 1.25604 0.96355 1.01023 1.01749 1.70280 1.14782 1.19553 1.53188 0.85327 0.78497 0.79398 0.77767 1.21391 1.22248 1.19291 1.21131 0.97300 0.83861 0.95954 1.22446 0.94403 0.99477 0.90946 0.93793 0.93209 0.92517 0.90156 0.92312 0.90713 0.91767 0.89883 0.94318 0.91867 0.92808 0.93533 0.91316 0.99126 0.92751 0.94132 0.97144 0.92519 0.89482 0.95058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.84 71.98 0.71 -2.58 16 2 C -0.10 -2.27 5.46 30.59 0.17 -2.11 16 3 C 0.08 2.05 1.90 44.91 0.09 2.13 16 4 C -0.15 -3.46 4.89 30.59 0.15 -3.31 16 5 C -0.15 -3.96 8.22 71.98 0.59 -3.36 16 6 N -0.53 -17.85 3.80 -869.99 -3.30 -21.16 16 7 C 0.04 1.45 4.74 86.39 0.41 1.86 16 8 C 0.18 9.27 5.52 86.35 0.48 9.75 16 9 N -0.61 -31.92 3.05 -698.11 -2.13 -34.05 16 10 C -0.26 -14.91 9.63 84.03 0.81 -14.10 16 11 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 12 C -0.05 -2.97 4.77 84.86 0.41 -2.57 16 13 N -0.93 -56.62 11.31 21.65 0.24 -56.38 16 14 Si 0.96 45.72 29.62 68.60 2.03 47.75 16 15 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 16 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 C 0.14 6.20 6.69 86.35 0.58 6.78 16 19 C 0.06 1.95 4.28 86.39 0.37 2.32 16 20 H 0.04 1.28 7.57 -2.39 -0.02 1.27 16 21 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.06 1.30 6.76 -2.39 -0.02 1.29 16 25 H 0.07 1.93 7.60 -2.39 -0.02 1.91 16 26 H 0.06 1.57 6.07 -2.38 -0.01 1.55 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.22 5.41 -2.39 -0.01 1.21 16 29 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.05 1.38 7.28 -2.39 -0.02 1.36 16 31 H 0.05 1.83 4.31 -2.39 -0.01 1.82 16 32 H 0.07 2.47 7.89 -2.39 -0.02 2.45 16 33 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.05 3.07 5.99 -2.39 -0.01 3.06 16 35 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.06 2.36 7.94 -2.39 -0.02 2.34 16 38 H 0.09 2.54 6.67 -2.39 -0.02 2.53 16 39 H 0.03 1.11 5.66 -2.38 -0.01 1.10 16 Total: -1.00 -63.32 287.41 2.59 -60.72 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.00 Total: 8.31 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 4.75 Total: -5.19 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -5.19 Total: -111.58 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -63.32 2.59 -60.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087157223.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.496 kcal (2) G-P(sol) polarization free energy of solvation -63.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds