Wall clock time and date at job start Mon Mar 30 2020 03:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46899 * 111.00201 * 2 1 4 4 H 1.08996 * 109.49716 * 327.92471 * 3 2 1 5 5 C 1.53035 * 109.49805 * 207.85833 * 3 2 1 6 6 C 1.53045 * 109.54129 * 301.41018 * 5 3 2 7 7 H 1.09007 * 109.51715 * 58.60181 * 6 5 3 8 8 C 1.52995 * 109.50027 * 178.68227 * 6 5 3 9 9 C 1.53001 * 109.47106 * 179.84027 * 8 6 5 10 10 C 1.53003 * 109.47078 * 299.84047 * 8 6 5 11 11 C 1.53188 * 109.31215 * 298.63722 * 6 5 3 12 12 N 1.46928 * 108.77618 * 54.63357 * 11 6 5 13 13 C 1.36933 * 120.63411 * 126.36778 * 12 11 6 14 14 H 1.07995 * 120.00044 * 208.39639 * 13 12 11 15 15 C 1.38813 * 119.99708 * 28.39621 * 13 12 11 16 16 N 1.31625 * 120.00011 * 197.89048 * 15 13 12 17 17 Si 1.86801 * 120.00249 * 17.88343 * 15 13 12 18 18 H 1.48491 * 109.47318 * 264.74468 * 17 15 13 19 19 H 1.48498 * 109.47008 * 24.74805 * 17 15 13 20 20 H 1.48499 * 109.47064 * 144.74262 * 17 15 13 21 21 C 1.46929 * 118.73729 * 306.64141 * 12 11 6 22 22 H 1.09004 * 109.47523 * 64.22578 * 1 2 3 23 23 H 1.08998 * 109.47465 * 184.23203 * 1 2 3 24 24 H 1.09008 * 109.46899 * 304.22610 * 1 2 3 25 25 H 1.00900 * 111.00040 * 123.95621 * 2 1 3 26 26 H 1.09003 * 109.46045 * 181.39357 * 5 3 2 27 27 H 1.09000 * 109.46178 * 61.43683 * 5 3 2 28 28 H 1.09000 * 109.47288 * 59.83743 * 8 6 5 29 29 H 1.08994 * 109.46978 * 299.99910 * 9 8 6 30 30 H 1.09002 * 109.47040 * 60.00448 * 9 8 6 31 31 H 1.09005 * 109.47028 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.47070 * 60.00286 * 10 8 6 33 33 H 1.09004 * 109.46897 * 179.97438 * 10 8 6 34 34 H 1.08994 * 109.47240 * 299.99958 * 10 8 6 35 35 H 1.08996 * 109.58751 * 294.84211 * 11 6 5 36 36 H 1.08997 * 109.70410 * 174.48728 * 11 6 5 37 37 H 0.96994 * 120.00245 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.59004 * 173.14880 * 21 12 11 39 39 H 1.09002 * 109.58345 * 293.57461 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3130 2.0230 -0.5456 5 6 3.3691 1.3912 -0.6741 6 6 4.3188 0.4506 0.0714 7 1 3.9067 -0.5586 0.0708 8 6 5.6822 0.4460 -0.6227 9 6 6.6322 -0.4914 0.1255 10 6 5.5187 -0.0383 -2.0648 11 6 4.4818 0.9354 1.5154 12 7 3.1511 1.0580 2.1262 13 6 2.8658 0.4301 3.3092 14 1 1.8531 0.1259 3.5286 15 6 3.8785 0.1846 4.2264 16 7 3.7015 -0.7059 5.1794 17 14 5.4924 1.1177 4.1080 18 1 6.4774 0.3084 3.3465 19 1 5.2675 2.4090 3.4101 20 1 6.0152 1.3776 5.4734 21 6 2.1303 1.8620 1.4404 22 1 -0.3634 0.4469 -0.9254 23 1 -0.3634 -1.0248 0.0758 24 1 -0.3633 0.5781 0.8498 25 1 1.8305 -0.5262 0.7813 26 1 3.7701 2.4045 -0.6517 27 1 3.2707 1.0626 -1.7087 28 1 6.0933 1.4555 -0.6229 29 1 6.7487 -0.1463 1.1528 30 1 6.2212 -1.5009 0.1256 31 1 7.6035 -0.4950 -0.3693 32 1 4.8419 0.6296 -2.5978 33 1 6.4900 -0.0412 -2.5594 34 1 5.1077 -1.0478 -2.0647 35 1 4.9773 1.9062 1.5212 36 1 5.0777 0.2177 2.0790 37 1 4.4089 -0.8772 5.8205 38 1 1.1745 1.7537 1.9529 39 1 2.4303 2.9100 1.4399 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108012262.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:08 Heat of formation + Delta-G solvation = 10.302054 kcal Electronic energy + Delta-G solvation = -17300.356239 eV Core-core repulsion = 14856.952425 eV Total energy + Delta-G solvation = -2443.403814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.99019 -35.66939 -34.27877 -31.75992 -30.27586 -28.87338 -27.04297 -25.07279 -24.24101 -22.76856 -21.87375 -19.61150 -18.71751 -16.79509 -15.76964 -15.08913 -14.68145 -14.05348 -13.85197 -13.69778 -13.55890 -13.25614 -12.69038 -12.45960 -12.25396 -11.95225 -11.77668 -11.67795 -11.55147 -11.22520 -10.86480 -10.73856 -10.61109 -10.39429 -10.27996 -9.89008 -9.62694 -9.52032 -9.33574 -8.65045 -7.90773 -6.90343 -5.95336 -3.33625 3.31462 3.47988 3.50836 4.52085 4.81450 4.96189 5.18686 5.26151 5.32422 5.41041 5.61824 5.68001 5.74466 5.78328 5.89968 5.92965 6.01738 6.05361 6.12933 6.17193 6.20299 6.22269 6.34173 6.42221 6.46957 6.51263 6.55707 6.58466 6.68369 6.77655 6.90414 7.12593 7.60004 7.96788 8.02090 8.30985 8.93325 9.71130 10.09592 11.20414 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019703 B = 0.014058 C = 0.009438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.787098 B = 1991.301784 C = 2965.921635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.687 5.687 3 C 0.067 3.933 4 H 0.065 0.935 5 C -0.093 4.093 6 C -0.096 4.096 7 H 0.080 0.920 8 C -0.091 4.091 9 C -0.151 4.151 10 C -0.142 4.142 11 C 0.130 3.870 12 N -0.604 5.604 13 C -0.261 4.261 14 H 0.083 0.917 15 C 0.025 3.975 16 N -0.910 5.910 17 Si 0.884 3.116 18 H -0.286 1.286 19 H -0.269 1.269 20 H -0.306 1.306 21 C 0.120 3.880 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.019 0.981 25 H 0.359 0.641 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.022 0.978 36 H 0.072 0.928 37 H 0.262 0.738 38 H 0.058 0.942 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.615 2.961 -12.431 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.320 5.320 3 C -0.045 4.045 4 H 0.083 0.917 5 C -0.131 4.131 6 C -0.116 4.116 7 H 0.098 0.902 8 C -0.110 4.110 9 C -0.209 4.209 10 C -0.200 4.200 11 C 0.005 3.995 12 N -0.328 5.328 13 C -0.390 4.390 14 H 0.101 0.899 15 C -0.174 4.174 16 N -0.553 5.553 17 Si 0.715 3.285 18 H -0.214 1.214 19 H -0.194 1.194 20 H -0.234 1.234 21 C -0.008 4.008 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.037 0.963 25 H 0.180 0.820 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.702 2.801 -12.927 13.246 hybrid contribution 0.743 0.786 1.066 1.518 sum 1.445 3.587 -11.861 12.476 Atomic orbital electron populations 1.22125 0.89411 1.00908 0.99485 1.60629 1.06338 1.13794 1.51254 1.21938 0.95847 0.89944 0.96736 0.91710 1.21480 0.94341 0.98543 0.98711 1.21652 0.93465 1.00638 0.95875 0.90205 1.21118 0.96120 0.98961 0.94839 1.21922 0.98358 0.99946 1.00640 1.21844 1.00603 1.01370 0.96155 1.21467 0.87893 0.98041 0.92072 1.44319 1.08738 1.56596 1.23122 1.18882 0.96646 1.31099 0.92337 0.89949 1.25280 0.98123 0.98169 0.95799 1.69805 1.33982 1.32913 1.18596 0.86941 0.84426 0.81580 0.75519 1.21363 1.19426 1.23417 1.21496 0.93291 0.93749 0.92226 0.92840 0.92263 0.96252 0.81952 0.92972 0.92158 0.91995 0.92344 0.92563 0.93473 0.92630 0.93646 0.92736 0.95983 0.91010 0.92787 0.92343 0.95888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.47 60.06 0.63 1.09 16 2 N -0.69 -11.87 6.02 -114.12 -0.69 -12.55 16 3 C 0.07 1.14 2.87 -67.82 -0.19 0.94 16 4 H 0.06 0.99 7.81 -51.93 -0.41 0.58 16 5 C -0.09 -1.50 4.58 -26.69 -0.12 -1.62 16 6 C -0.10 -1.71 1.68 -90.50 -0.15 -1.86 16 7 H 0.08 1.55 7.20 -51.93 -0.37 1.17 16 8 C -0.09 -1.40 2.51 -90.62 -0.23 -1.63 16 9 C -0.15 -2.38 8.85 37.16 0.33 -2.06 16 10 C -0.14 -1.86 8.85 37.16 0.33 -1.53 16 11 C 0.13 2.83 2.93 -3.71 -0.01 2.82 16 12 N -0.60 -14.12 2.05 -172.59 -0.35 -14.47 16 13 C -0.26 -7.19 10.05 -15.06 -0.15 -7.35 16 14 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 15 C 0.03 0.73 5.28 -17.43 -0.09 0.64 16 16 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 17 Si 0.88 22.53 24.33 -169.99 -4.14 18.39 16 18 H -0.29 -6.98 6.22 56.52 0.35 -6.63 16 19 H -0.27 -6.77 6.25 56.52 0.35 -6.42 16 20 H -0.31 -7.98 7.11 56.52 0.40 -7.57 16 21 C 0.12 2.38 5.95 -3.93 -0.02 2.36 16 22 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.02 0.29 7.49 -51.92 -0.39 -0.10 16 25 H 0.36 7.20 7.27 -39.29 -0.29 6.91 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.90 6.36 -51.93 -0.33 0.57 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.05 6.04 -51.93 -0.31 0.73 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.69 6.41 -51.93 -0.33 0.36 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.02 0.49 6.85 -51.93 -0.36 0.14 16 36 H 0.07 1.71 3.12 -51.93 -0.16 1.55 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.06 1.18 7.30 -51.93 -0.38 0.81 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 285.42 15.07 4.30 4.30 Total: -1.00 -28.88 285.42 -6.57 -35.45 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.79 Total: 4.11 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 0.31 Total: -8.20 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.27 Total: -54.05 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.14 Total: 18.39 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.88 -6.57 -35.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012262.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.752 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds