Wall clock time and date at job start Mon Mar 30 2020 03:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46932 * 2 1 4 4 C 1.52998 * 109.46932 * 240.00787 * 2 1 3 5 5 N 1.46892 * 109.47496 * 120.00159 * 2 1 3 6 6 C 1.47904 * 110.99849 * 55.18634 * 5 2 1 7 7 C 1.53992 * 107.06012 * 145.84226 * 6 5 2 8 8 C 1.54591 * 105.13938 * 358.77537 * 7 6 5 9 9 H 1.08993 * 110.72834 * 96.40368 * 8 7 6 10 10 N 1.46907 * 110.72153 * 219.50727 * 8 7 6 11 11 C 1.46897 * 110.99729 * 271.14674 * 10 8 7 12 12 C 1.50703 * 109.46771 * 180.02562 * 11 10 8 13 13 H 1.07993 * 120.00146 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99624 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99725 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00006 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47114 * 90.00023 * 16 14 12 18 18 H 1.48504 * 109.47153 * 209.99908 * 16 14 12 19 19 H 1.48498 * 109.47601 * 329.99691 * 16 14 12 20 20 C 1.49008 * 110.97109 * 172.62238 * 5 2 1 21 21 H 1.08998 * 109.46862 * 299.99465 * 1 2 3 22 22 H 1.08998 * 109.47470 * 59.99521 * 1 2 3 23 23 H 1.08997 * 109.46603 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47211 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47434 * 300.00501 * 3 2 1 26 26 H 1.08998 * 109.46910 * 60.00564 * 3 2 1 27 27 H 1.09002 * 109.46984 * 292.84607 * 4 2 1 28 28 H 1.09005 * 109.47507 * 52.83962 * 4 2 1 29 29 H 1.08998 * 109.47523 * 172.84196 * 4 2 1 30 30 H 1.09006 * 109.91899 * 26.48880 * 6 5 2 31 31 H 1.09005 * 109.91508 * 265.19760 * 6 5 2 32 32 H 1.09003 * 110.30673 * 239.85759 * 7 6 5 33 33 H 1.09002 * 110.39032 * 117.73309 * 7 6 5 34 34 H 1.00902 * 110.99877 * 147.19163 * 10 8 7 35 35 H 1.09003 * 109.46978 * 299.99746 * 11 10 8 36 36 H 1.08999 * 109.47502 * 59.99975 * 11 10 8 37 37 H 0.96995 * 120.00061 * 179.97438 * 15 14 12 38 38 H 1.08996 * 110.86177 * 81.89942 * 20 5 2 39 39 H 1.09003 * 110.67963 * 318.62154 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 2.0198 -0.6925 1.1993 6 6 1.4533 -2.0555 1.2928 7 6 2.5342 -2.9516 1.9253 8 6 3.7481 -2.0215 2.1515 9 1 3.7608 -1.6458 3.1745 10 7 5.0028 -2.7195 1.8404 11 6 5.5230 -3.4191 3.0227 12 6 6.8079 -4.1211 2.6660 13 1 7.1991 -4.0539 1.6616 14 6 7.4846 -4.8484 3.6222 15 7 8.6056 -5.4615 3.3108 16 14 6.8090 -4.9629 5.3599 17 1 5.9054 -6.1368 5.4634 18 1 7.9325 -5.1170 6.3187 19 1 6.0520 -3.7259 5.6793 20 6 3.4985 -0.8686 1.1470 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.7849 -1.7790 -1.1878 28 1 1.5759 -0.2864 -2.1347 29 1 3.1224 -0.6116 -1.3158 30 1 1.2024 -2.4225 0.2975 31 1 0.5638 -2.0455 1.9228 32 1 2.7995 -3.7614 1.2456 33 1 2.1846 -3.3553 2.8755 34 1 5.6889 -2.0807 1.4672 35 1 5.7121 -2.6978 3.8178 36 1 4.7908 -4.1513 3.3631 37 1 9.0819 -5.9728 3.9835 38 1 4.0091 0.0391 1.4686 39 1 3.8167 -1.1558 0.1448 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142926349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:51 Heat of formation + Delta-G solvation = 3.930193 kcal Electronic energy + Delta-G solvation = -16311.039359 eV Core-core repulsion = 13867.359240 eV Total energy + Delta-G solvation = -2443.680119 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.76605 -36.13102 -33.60872 -32.03163 -29.28916 -28.65038 -27.44044 -27.12102 -25.46152 -22.05768 -21.26912 -19.85652 -18.55431 -16.87436 -16.08199 -15.79840 -14.75325 -14.34556 -14.19049 -13.87274 -13.74226 -13.43650 -12.81275 -12.58960 -12.31391 -12.13977 -11.92777 -11.81468 -11.57408 -11.48668 -11.13783 -11.06637 -10.87206 -10.67559 -10.63676 -10.33423 -10.11941 -9.79198 -9.26513 -8.58719 -8.25752 -7.49885 -6.05797 -4.03717 3.29474 3.36532 3.39623 3.95217 4.42530 4.67261 4.79358 4.91355 5.04461 5.14721 5.19375 5.27449 5.37342 5.45254 5.49608 5.57436 5.65958 5.69661 5.76180 5.79127 5.87458 5.90525 6.05903 6.10729 6.15056 6.18859 6.33237 6.43468 6.51333 6.81886 7.00343 7.03542 7.18721 7.62150 7.91663 8.33154 8.65266 9.02032 9.56360 11.07529 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.052950 B = 0.005460 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.671650 B = 5127.076522 C = 5293.390508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.091 3.909 3 C -0.135 4.135 4 C -0.184 4.184 5 N -0.506 5.506 6 C 0.036 3.964 7 C -0.122 4.122 8 C 0.080 3.920 9 H 0.048 0.952 10 N -0.673 5.673 11 C 0.165 3.835 12 C -0.516 4.516 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.901 5.901 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.029 3.971 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.336 0.664 35 H -0.016 1.016 36 H 0.022 0.978 37 H 0.264 0.736 38 H 0.075 0.925 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.602 11.283 -5.860 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.001 3.999 3 C -0.193 4.193 4 C -0.242 4.242 5 N -0.230 5.230 6 C -0.092 4.092 7 C -0.161 4.161 8 C -0.031 4.031 9 H 0.066 0.934 10 N -0.304 5.304 11 C 0.037 3.963 12 C -0.554 4.554 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.705 3.295 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.099 4.099 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.153 0.847 35 H 0.002 0.998 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.936 10.934 -5.582 20.117 hybrid contribution 0.319 0.022 0.797 0.859 sum -15.617 10.956 -4.785 19.668 Atomic orbital electron populations 1.21884 0.93944 1.01990 1.01847 1.21191 0.95232 0.94736 0.88702 1.21805 1.01177 0.94632 1.01668 1.22527 1.02048 1.01251 0.98378 1.65090 1.05511 1.16559 1.35874 1.22890 0.98226 0.88372 0.99741 1.22451 0.94206 0.98342 1.01063 1.22386 0.91935 0.91981 0.96801 0.93445 1.60569 1.04889 1.31348 1.33558 1.20022 0.95649 0.93207 0.87374 1.21069 1.04875 1.30410 0.99082 0.90336 1.24904 0.94713 0.95079 0.98607 1.69901 1.16313 1.33329 1.34439 0.86824 0.78810 0.78984 0.84918 1.20141 1.21206 1.19240 1.23529 0.88489 0.98285 0.99566 0.91957 0.92472 0.92572 0.92578 0.92560 0.91992 0.92050 0.92335 0.91804 0.93362 0.91016 0.90230 0.91883 0.84664 0.99798 0.96014 0.92655 0.90624 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.27 37.16 0.31 -1.02 16 2 C 0.09 1.00 0.69 -131.60 -0.09 0.91 16 3 C -0.14 -1.35 8.49 37.16 0.32 -1.04 16 4 C -0.18 -1.98 7.60 37.16 0.28 -1.69 16 5 N -0.51 -6.66 5.10 -214.44 -1.09 -7.75 16 6 C 0.04 0.47 5.10 -2.75 -0.01 0.45 16 7 C -0.12 -1.93 6.65 -25.38 -0.17 -2.09 16 8 C 0.08 1.39 3.36 -65.85 -0.22 1.17 16 9 H 0.05 0.88 7.86 -51.93 -0.41 0.47 16 10 N -0.67 -13.96 6.31 -106.03 -0.67 -14.62 16 11 C 0.17 4.07 4.38 -4.98 -0.02 4.05 16 12 C -0.52 -14.89 9.87 -34.44 -0.34 -15.23 16 13 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 16 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 20 C 0.03 0.42 4.91 -1.63 -0.01 0.41 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.54 6.77 -51.93 -0.35 0.18 16 24 H 0.06 0.59 7.16 -51.93 -0.37 0.21 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.70 6.06 -51.93 -0.31 0.39 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.73 6.36 -51.93 -0.33 0.40 16 30 H 0.05 0.60 5.29 -51.93 -0.27 0.33 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.35 8.05 -51.93 -0.42 0.94 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.34 6.72 8.45 -39.29 -0.33 6.39 16 35 H -0.02 -0.39 7.14 -51.93 -0.37 -0.76 16 36 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.08 1.05 7.73 -51.93 -0.40 0.65 16 39 H 0.06 0.92 5.56 -51.93 -0.29 0.63 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -30.11 295.72 -8.06 -38.17 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.80 Total: 1.86 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -0.06 Total: -12.17 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.99 Total: -49.48 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.11 -8.06 -38.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142926349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.099 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds