Wall clock time and date at job start Mon Mar 30 2020 03:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46932 * 2 1 4 4 C 1.52998 * 109.46932 * 240.00787 * 2 1 3 5 5 N 1.46892 * 109.47496 * 120.00159 * 2 1 3 6 6 C 1.47904 * 110.99849 * 55.18634 * 5 2 1 7 7 C 1.53992 * 107.06012 * 145.84226 * 6 5 2 8 8 C 1.54591 * 105.13938 * 358.77537 * 7 6 5 9 9 H 1.08993 * 110.72834 * 96.40368 * 8 7 6 10 10 N 1.46907 * 110.72153 * 219.50727 * 8 7 6 11 11 C 1.46897 * 110.99729 * 271.14674 * 10 8 7 12 12 C 1.50703 * 109.46771 * 180.02562 * 11 10 8 13 13 H 1.07993 * 120.00146 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99624 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99725 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00006 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47114 * 90.00023 * 16 14 12 18 18 H 1.48504 * 109.47153 * 209.99908 * 16 14 12 19 19 H 1.48498 * 109.47601 * 329.99691 * 16 14 12 20 20 C 1.49008 * 110.97109 * 172.62238 * 5 2 1 21 21 H 1.08998 * 109.46862 * 299.99465 * 1 2 3 22 22 H 1.08998 * 109.47470 * 59.99521 * 1 2 3 23 23 H 1.08997 * 109.46603 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47211 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47434 * 300.00501 * 3 2 1 26 26 H 1.08998 * 109.46910 * 60.00564 * 3 2 1 27 27 H 1.09002 * 109.46984 * 292.84607 * 4 2 1 28 28 H 1.09005 * 109.47507 * 52.83962 * 4 2 1 29 29 H 1.08998 * 109.47523 * 172.84196 * 4 2 1 30 30 H 1.09006 * 109.91899 * 26.48880 * 6 5 2 31 31 H 1.09005 * 109.91508 * 265.19760 * 6 5 2 32 32 H 1.09003 * 110.30673 * 239.85759 * 7 6 5 33 33 H 1.09002 * 110.39032 * 117.73309 * 7 6 5 34 34 H 1.00902 * 110.99877 * 147.19163 * 10 8 7 35 35 H 1.09003 * 109.46978 * 299.99746 * 11 10 8 36 36 H 1.08999 * 109.47502 * 59.99975 * 11 10 8 37 37 H 0.96995 * 120.00061 * 179.97438 * 15 14 12 38 38 H 1.08996 * 110.86177 * 81.89942 * 20 5 2 39 39 H 1.09003 * 110.67963 * 318.62154 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 2.0198 -0.6925 1.1993 6 6 1.4533 -2.0555 1.2928 7 6 2.5342 -2.9516 1.9253 8 6 3.7481 -2.0215 2.1515 9 1 3.7608 -1.6458 3.1745 10 7 5.0028 -2.7195 1.8404 11 6 5.5230 -3.4191 3.0227 12 6 6.8079 -4.1211 2.6660 13 1 7.1991 -4.0539 1.6616 14 6 7.4846 -4.8484 3.6222 15 7 8.6056 -5.4615 3.3108 16 14 6.8090 -4.9629 5.3599 17 1 5.9054 -6.1368 5.4634 18 1 7.9325 -5.1170 6.3187 19 1 6.0520 -3.7259 5.6793 20 6 3.4985 -0.8686 1.1470 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.7849 -1.7790 -1.1878 28 1 1.5759 -0.2864 -2.1347 29 1 3.1224 -0.6116 -1.3158 30 1 1.2024 -2.4225 0.2975 31 1 0.5638 -2.0455 1.9228 32 1 2.7995 -3.7614 1.2456 33 1 2.1846 -3.3553 2.8755 34 1 5.6889 -2.0807 1.4672 35 1 5.7121 -2.6978 3.8178 36 1 4.7908 -4.1513 3.3631 37 1 9.0819 -5.9728 3.9835 38 1 4.0091 0.0391 1.4686 39 1 3.8167 -1.1558 0.1448 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142926349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:50 Heat of formation + Delta-G solvation = -18.005095 kcal Electronic energy + Delta-G solvation = -16311.990545 eV Core-core repulsion = 13867.359240 eV Total energy + Delta-G solvation = -2444.631304 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83294 -37.51394 -35.27172 -33.91203 -30.44890 -30.14341 -28.28335 -28.23994 -26.93740 -23.40327 -23.02518 -21.20642 -19.53042 -18.95239 -17.30088 -17.01154 -16.57418 -15.57222 -15.45139 -15.11229 -14.94777 -14.84390 -14.51816 -13.96454 -13.63979 -13.41303 -13.00323 -12.91374 -12.74062 -12.57162 -12.48832 -12.39046 -12.14361 -11.92628 -11.86687 -11.77580 -11.53906 -11.47788 -11.32757 -10.82482 -9.28479 -9.20437 -8.32019 -6.36554 1.33782 1.34832 1.46126 2.32356 2.89097 3.02159 3.59035 3.65501 3.76623 4.03572 4.07562 4.19185 4.28883 4.34271 4.57045 4.64556 4.70214 4.72380 4.78432 4.88371 4.91543 4.95558 4.96174 5.02436 5.02790 5.07715 5.16387 5.21683 5.25447 5.37428 5.48411 5.52007 5.87380 6.01428 6.21302 6.53428 6.63987 6.74518 7.28659 8.84720 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.052950 B = 0.005460 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.671650 B = 5127.076522 C = 5293.390508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.087 3.913 3 C -0.133 4.133 4 C -0.181 4.181 5 N -0.510 5.510 6 C 0.043 3.957 7 C -0.122 4.122 8 C 0.075 3.925 9 H 0.039 0.961 10 N -0.678 5.678 11 C 0.179 3.821 12 C -0.529 4.529 13 H 0.038 0.962 14 C 0.010 3.990 15 N -0.946 5.946 16 Si 0.950 3.050 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.254 1.254 20 C 0.040 3.960 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.337 0.663 35 H -0.016 1.016 36 H 0.022 0.978 37 H 0.268 0.732 38 H 0.080 0.920 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.768 12.381 -5.340 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.002 4.002 3 C -0.191 4.191 4 C -0.239 4.239 5 N -0.235 5.235 6 C -0.084 4.084 7 C -0.161 4.161 8 C -0.035 4.035 9 H 0.057 0.943 10 N -0.309 5.309 11 C 0.050 3.950 12 C -0.567 4.567 13 H 0.057 0.943 14 C -0.188 4.188 15 N -0.587 5.587 16 Si 0.773 3.227 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.177 1.177 20 C -0.088 4.088 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.002 0.998 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.124 12.050 -5.082 22.350 hybrid contribution 1.015 -0.301 0.523 1.181 sum -17.108 11.749 -4.560 21.249 Atomic orbital electron populations 1.21865 0.92523 1.02250 1.02685 1.21346 0.96315 0.94894 0.87690 1.21799 1.00681 0.94116 1.02490 1.22496 1.01474 1.00810 0.99128 1.65134 1.04339 1.16519 1.37467 1.22841 0.97544 0.87839 1.00224 1.22430 0.94426 0.98174 1.01020 1.22475 0.90595 0.93250 0.97221 0.94272 1.60475 1.06085 1.32306 1.32032 1.19739 0.93593 0.93097 0.88583 1.21332 1.06716 1.31093 0.97547 0.94341 1.25854 0.94858 0.94483 1.03569 1.70046 1.17919 1.34392 1.36311 0.85675 0.78457 0.79758 0.78798 1.19014 1.20423 1.17747 1.23375 0.89787 0.97165 0.98458 0.92066 0.90740 0.92601 0.93375 0.90762 0.92176 0.92913 0.90562 0.92876 0.92496 0.89649 0.91802 0.91784 0.84509 0.99793 0.96023 0.92287 0.90140 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.27 71.98 0.60 -1.58 16 2 C 0.09 1.69 0.69 3.53 0.00 1.70 16 3 C -0.13 -2.35 8.49 71.98 0.61 -1.74 16 4 C -0.18 -3.51 7.60 71.98 0.55 -2.97 16 5 N -0.51 -12.40 5.10 -832.35 -4.24 -16.65 16 6 C 0.04 1.05 5.10 86.45 0.44 1.49 16 7 C -0.12 -3.72 6.65 31.47 0.21 -3.51 16 8 C 0.08 2.55 3.36 46.12 0.15 2.70 16 9 H 0.04 1.41 7.86 -2.39 -0.02 1.39 16 10 N -0.68 -28.26 6.31 -489.36 -3.09 -31.34 16 11 C 0.18 8.76 4.38 85.56 0.37 9.14 16 12 C -0.53 -31.19 9.87 25.60 0.25 -30.93 16 13 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16 14 C 0.01 0.60 5.47 84.66 0.46 1.06 16 15 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 16 Si 0.95 44.78 27.47 68.60 1.88 46.66 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.25 -11.30 6.54 99.48 0.65 -10.64 16 20 C 0.04 1.11 4.91 86.56 0.43 1.54 16 21 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.05 0.90 6.77 -2.39 -0.02 0.89 16 24 H 0.05 0.92 7.16 -2.39 -0.02 0.90 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 1.11 6.06 -2.39 -0.01 1.10 16 28 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.05 1.14 6.36 -2.39 -0.02 1.13 16 30 H 0.06 1.30 5.29 -2.38 -0.01 1.28 16 31 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.06 2.15 8.05 -2.39 -0.02 2.13 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.34 13.71 8.45 -89.69 -0.76 12.96 16 35 H -0.02 -0.76 7.14 -2.39 -0.02 -0.78 16 36 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 37 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 38 H 0.08 2.15 7.73 -2.39 -0.02 2.13 16 39 H 0.06 1.73 5.56 -2.39 -0.01 1.71 16 Total: -1.00 -64.73 295.72 -0.87 -65.60 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.20 Total: 18.24 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 4.08 Total: -23.11 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -7.03 Total: -107.40 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -64.73 -0.87 -65.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142926349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.598 kcal (2) G-P(sol) polarization free energy of solvation -64.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds