Wall clock time and date at job start Mon Mar 30 2020 03:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46972 * 2 1 4 4 C 1.53000 * 109.46645 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47639 * 55.00297 * 4 3 2 6 6 C 1.53004 * 109.46716 * 175.00087 * 4 3 2 7 7 N 1.46895 * 109.47332 * 294.99603 * 4 3 2 8 8 C 1.46899 * 111.00460 * 299.30937 * 7 4 3 9 9 C 1.53232 * 109.34582 * 172.74464 * 8 7 4 10 10 N 1.47080 * 108.52059 * 53.82620 * 9 8 7 11 11 C 1.36935 * 120.88022 * 128.83797 * 10 9 8 12 12 H 1.08007 * 120.00019 * 206.56490 * 11 10 9 13 13 C 1.38815 * 120.00172 * 26.56798 * 11 10 9 14 14 N 1.31615 * 119.99925 * 17.01273 * 13 11 10 15 15 Si 1.86801 * 120.00171 * 197.01524 * 13 11 10 16 16 H 1.48505 * 109.47178 * 59.99547 * 15 13 11 17 17 H 1.48494 * 109.47230 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47084 * 299.99661 * 15 13 11 19 19 C 1.47079 * 118.23766 * 308.81635 * 10 9 8 20 20 C 1.46894 * 111.00329 * 175.00414 * 7 4 3 21 21 H 1.08994 * 109.47263 * 60.00093 * 1 2 3 22 22 H 1.09004 * 109.47392 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47165 * 300.00053 * 1 2 3 24 24 H 1.09003 * 109.47143 * 119.99871 * 2 1 3 25 25 H 1.09003 * 109.46665 * 239.99842 * 2 1 3 26 26 H 1.09003 * 109.47081 * 299.99909 * 3 2 1 27 27 H 1.08997 * 109.46950 * 60.00076 * 3 2 1 28 28 H 1.09000 * 109.46904 * 180.02562 * 6 4 3 29 29 H 1.08999 * 109.46834 * 299.99710 * 6 4 3 30 30 H 1.08998 * 109.47557 * 59.99797 * 6 4 3 31 31 H 1.09007 * 109.48697 * 292.70591 * 8 7 4 32 32 H 1.09003 * 109.49440 * 52.77643 * 8 7 4 33 33 H 1.09001 * 109.62820 * 294.11733 * 9 8 7 34 34 H 1.09000 * 109.63371 * 173.53498 * 9 8 7 35 35 H 0.97001 * 120.00426 * 179.97438 * 14 13 11 36 36 H 1.08993 * 109.63124 * 291.47545 * 19 10 9 37 37 H 1.09008 * 109.63048 * 170.89230 * 19 10 9 38 38 H 1.09003 * 109.49284 * 307.21719 * 20 7 4 39 39 H 1.09003 * 109.49733 * 67.29718 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0799 2.8795 -0.1264 7 7 4.0601 0.8570 1.2543 8 6 3.6033 1.6364 2.4126 9 6 3.9792 0.8978 3.7015 10 7 5.4220 0.6135 3.6732 11 6 6.2259 0.9518 4.7288 12 1 7.2758 1.1473 4.5672 13 6 5.6916 1.0436 6.0067 14 7 4.5251 0.4953 6.2732 15 14 6.6280 1.9453 7.3482 16 1 6.8343 3.3590 6.9432 17 1 5.8489 1.9003 8.6115 18 1 7.9456 1.2927 7.5564 19 6 5.9783 -0.0444 2.4811 20 6 5.5236 0.7314 1.2403 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.8932 -0.5139 -0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 5.1699 2.8794 -0.1273 29 1 3.7162 3.3139 -1.0575 30 1 3.7169 3.4689 0.7156 31 1 4.0804 2.6164 2.4026 32 1 2.5211 1.7578 2.3654 33 1 3.4229 -0.0375 3.7632 34 1 3.7462 1.5232 4.5633 35 1 4.1518 0.5590 7.1662 36 1 5.6142 -1.0702 2.4254 37 1 7.0670 -0.0418 2.5359 38 1 5.8342 0.1964 0.3428 39 1 5.9741 1.7240 1.2467 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218586582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:05 Heat of formation + Delta-G solvation = 15.734389 kcal Electronic energy + Delta-G solvation = -16787.599628 eV Core-core repulsion = 14344.431377 eV Total energy + Delta-G solvation = -2443.168250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.81104 -35.65100 -33.54618 -31.60947 -29.97502 -29.57931 -26.58002 -25.89180 -23.09841 -22.55472 -21.34388 -20.08465 -18.56149 -16.57807 -15.84913 -14.66850 -14.57835 -14.25712 -13.88013 -13.72275 -13.31432 -13.18932 -13.01327 -12.52696 -12.30131 -11.92147 -11.62825 -11.34738 -11.17558 -10.93524 -10.74580 -10.66877 -10.46904 -10.35596 -10.31730 -10.11618 -9.89566 -9.62698 -9.47730 -8.45441 -7.63536 -6.60331 -5.73450 -3.14114 3.40753 3.46354 3.47610 4.47819 4.55112 4.94161 5.25729 5.28367 5.43211 5.46227 5.52721 5.56952 5.71373 5.75791 5.88631 5.93210 6.07204 6.09325 6.10200 6.13313 6.21438 6.26958 6.33864 6.40477 6.45281 6.58108 6.67686 6.70706 6.80637 7.00834 7.33866 7.71587 7.75713 7.80969 7.90386 8.48577 9.26383 9.90158 10.49063 11.35213 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.036260 B = 0.007167 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.012294 B = 3905.758435 C = 4205.427746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.111 4.111 4 C 0.077 3.923 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.522 5.522 8 C 0.031 3.969 9 C 0.179 3.821 10 N -0.595 5.595 11 C -0.251 4.251 12 H 0.064 0.936 13 C 0.001 3.999 14 N -0.904 5.904 15 Si 0.902 3.098 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.149 3.851 20 C 0.043 3.957 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.063 0.937 33 H 0.024 0.976 34 H 0.086 0.914 35 H 0.254 0.746 36 H 0.024 0.976 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 1.999 -12.342 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.148 4.148 4 C -0.032 4.032 5 H 0.091 0.909 6 C -0.243 4.243 7 N -0.247 5.247 8 C -0.098 4.098 9 C 0.053 3.947 10 N -0.318 5.318 11 C -0.381 4.381 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.548 5.548 15 Si 0.732 3.268 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.209 1.209 19 C 0.022 3.978 20 C -0.086 4.086 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.097 0.903 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -4.749 1.509 -12.111 13.096 hybrid contribution 0.797 1.338 0.618 1.676 sum -3.951 2.848 -11.493 12.482 Atomic orbital electron populations 1.21791 0.96839 1.01116 1.01140 1.21417 0.94444 0.96799 1.02786 1.21684 0.94410 0.97368 1.01358 1.21753 0.95012 0.92897 0.93533 0.90921 1.22457 1.01451 0.98896 1.01535 1.62166 1.10795 1.50372 1.01332 1.22947 0.98526 0.95518 0.92794 1.20852 0.83871 0.97265 0.92724 1.44110 1.04615 1.67776 1.15348 1.19153 0.92864 1.40241 0.85803 0.91803 1.25006 0.97674 1.00136 0.96934 1.70022 1.19237 1.45207 1.20373 0.86379 0.79156 0.80013 0.81283 1.21175 1.21630 1.20932 1.20973 0.96364 0.94171 0.86266 1.22605 0.87520 0.99130 0.99376 0.93539 0.93150 0.92921 0.90314 0.92853 0.92614 0.91658 0.92689 0.92994 0.92339 0.95638 0.91890 0.95773 0.89606 0.93633 0.95803 0.92862 0.92348 0.95334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.52 5.82 -26.73 -0.16 -1.68 16 3 C -0.11 -1.45 4.50 -26.73 -0.12 -1.57 16 4 C 0.08 1.12 2.35 -67.71 -0.16 0.96 16 5 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 6 C -0.18 -2.55 8.51 37.16 0.32 -2.23 16 7 N -0.52 -9.34 4.07 -226.34 -0.92 -10.26 16 8 C 0.03 0.62 4.77 -3.70 -0.02 0.60 16 9 C 0.18 4.41 5.42 -3.61 -0.02 4.39 16 10 N -0.60 -15.41 3.04 -172.01 -0.52 -15.93 16 11 C -0.25 -7.04 9.63 -15.06 -0.15 -7.19 16 12 H 0.06 1.76 7.88 -52.48 -0.41 1.34 16 13 C 0.00 0.02 4.94 -17.43 -0.09 -0.06 16 14 N -0.90 -26.63 11.15 55.49 0.62 -26.01 16 15 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.15 3.26 6.69 -3.60 -0.02 3.23 16 20 C 0.04 0.80 5.14 -3.70 -0.02 0.78 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.92 6.03 -51.93 -0.31 0.61 16 28 H 0.05 0.79 6.69 -51.93 -0.35 0.44 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.87 6.56 -51.93 -0.34 0.53 16 31 H 0.03 0.53 6.71 -51.93 -0.35 0.18 16 32 H 0.06 1.15 5.87 -51.93 -0.31 0.85 16 33 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 2.34 6.12 -51.93 -0.32 2.02 16 35 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 1.12 7.95 -51.92 -0.41 0.71 16 38 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 39 H 0.03 0.55 6.81 -51.93 -0.35 0.19 16 LS Contribution 294.78 15.07 4.44 4.44 Total: -1.00 -29.13 294.78 -8.38 -37.52 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.91 Total: -2.59 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.06 Total: -4.12 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.82 Total: -52.20 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.13 -8.38 -37.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218586582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.250 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds