Wall clock time and date at job start Mon Mar 30 2020 03:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46972 * 2 1 4 4 C 1.53000 * 109.46645 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47639 * 55.00297 * 4 3 2 6 6 C 1.53004 * 109.46716 * 175.00087 * 4 3 2 7 7 N 1.46895 * 109.47332 * 294.99603 * 4 3 2 8 8 C 1.46899 * 111.00460 * 299.30937 * 7 4 3 9 9 C 1.53232 * 109.34582 * 172.74464 * 8 7 4 10 10 N 1.47080 * 108.52059 * 53.82620 * 9 8 7 11 11 C 1.36935 * 120.88022 * 128.83797 * 10 9 8 12 12 H 1.08007 * 120.00019 * 206.56490 * 11 10 9 13 13 C 1.38815 * 120.00172 * 26.56798 * 11 10 9 14 14 N 1.31615 * 119.99925 * 17.01273 * 13 11 10 15 15 Si 1.86801 * 120.00171 * 197.01524 * 13 11 10 16 16 H 1.48505 * 109.47178 * 59.99547 * 15 13 11 17 17 H 1.48494 * 109.47230 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47084 * 299.99661 * 15 13 11 19 19 C 1.47079 * 118.23766 * 308.81635 * 10 9 8 20 20 C 1.46894 * 111.00329 * 175.00414 * 7 4 3 21 21 H 1.08994 * 109.47263 * 60.00093 * 1 2 3 22 22 H 1.09004 * 109.47392 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47165 * 300.00053 * 1 2 3 24 24 H 1.09003 * 109.47143 * 119.99871 * 2 1 3 25 25 H 1.09003 * 109.46665 * 239.99842 * 2 1 3 26 26 H 1.09003 * 109.47081 * 299.99909 * 3 2 1 27 27 H 1.08997 * 109.46950 * 60.00076 * 3 2 1 28 28 H 1.09000 * 109.46904 * 180.02562 * 6 4 3 29 29 H 1.08999 * 109.46834 * 299.99710 * 6 4 3 30 30 H 1.08998 * 109.47557 * 59.99797 * 6 4 3 31 31 H 1.09007 * 109.48697 * 292.70591 * 8 7 4 32 32 H 1.09003 * 109.49440 * 52.77643 * 8 7 4 33 33 H 1.09001 * 109.62820 * 294.11733 * 9 8 7 34 34 H 1.09000 * 109.63371 * 173.53498 * 9 8 7 35 35 H 0.97001 * 120.00426 * 179.97438 * 14 13 11 36 36 H 1.08993 * 109.63124 * 291.47545 * 19 10 9 37 37 H 1.09008 * 109.63048 * 170.89230 * 19 10 9 38 38 H 1.09003 * 109.49284 * 307.21719 * 20 7 4 39 39 H 1.09003 * 109.49733 * 67.29718 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0799 2.8795 -0.1264 7 7 4.0601 0.8570 1.2543 8 6 3.6033 1.6364 2.4126 9 6 3.9792 0.8978 3.7015 10 7 5.4220 0.6135 3.6732 11 6 6.2259 0.9518 4.7288 12 1 7.2758 1.1473 4.5672 13 6 5.6916 1.0436 6.0067 14 7 4.5251 0.4953 6.2732 15 14 6.6280 1.9453 7.3482 16 1 6.8343 3.3590 6.9432 17 1 5.8489 1.9003 8.6115 18 1 7.9456 1.2927 7.5564 19 6 5.9783 -0.0444 2.4811 20 6 5.5236 0.7314 1.2403 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.8932 -0.5139 -0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 5.1699 2.8794 -0.1273 29 1 3.7162 3.3139 -1.0575 30 1 3.7169 3.4689 0.7156 31 1 4.0804 2.6164 2.4026 32 1 2.5211 1.7578 2.3654 33 1 3.4229 -0.0375 3.7632 34 1 3.7462 1.5232 4.5633 35 1 4.1518 0.5590 7.1662 36 1 5.6142 -1.0702 2.4254 37 1 7.0670 -0.0418 2.5359 38 1 5.8342 0.1964 0.3428 39 1 5.9741 1.7240 1.2467 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218586582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:05 Heat of formation + Delta-G solvation = -1.792110 kcal Electronic energy + Delta-G solvation = -16788.359634 eV Core-core repulsion = 14344.431377 eV Total energy + Delta-G solvation = -2443.928256 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27266 -37.27045 -34.98731 -33.33407 -31.68074 -31.16064 -27.83838 -27.50856 -24.90416 -24.26579 -22.46846 -21.52282 -20.19070 -18.51324 -17.34528 -16.53652 -15.94247 -15.61997 -15.44896 -15.33394 -14.88803 -14.69802 -14.50514 -13.80694 -13.62712 -13.28777 -12.99807 -12.94249 -12.70846 -12.55322 -12.32940 -12.26131 -12.03273 -11.99406 -11.66825 -11.55899 -11.35729 -11.28654 -11.12215 -10.57486 -9.11829 -8.65478 -7.87200 -5.31951 1.45694 1.48137 1.55272 2.50652 3.07743 3.28045 3.69763 3.86174 4.16450 4.22125 4.33276 4.38956 4.46874 4.55402 4.58870 4.64959 4.72362 4.73644 4.81632 4.87799 4.93869 4.99753 5.10306 5.11362 5.12414 5.23633 5.32047 5.39783 5.41756 5.54065 5.60297 5.66309 5.69865 6.27843 6.38752 6.42274 7.13427 7.84617 8.39156 9.19310 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.036260 B = 0.007167 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.012294 B = 3905.758435 C = 4205.427746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.107 4.107 4 C 0.077 3.923 5 H 0.089 0.911 6 C -0.179 4.179 7 N -0.530 5.530 8 C 0.052 3.948 9 C 0.187 3.813 10 N -0.614 5.614 11 C -0.266 4.266 12 H 0.066 0.934 13 C -0.052 4.052 14 N -0.936 5.936 15 Si 0.969 3.031 16 H -0.279 1.279 17 H -0.293 1.293 18 H -0.275 1.275 19 C 0.144 3.856 20 C 0.055 3.945 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.018 0.982 32 H 0.078 0.922 33 H -0.006 1.006 34 H 0.053 0.947 35 H 0.250 0.750 36 H 0.014 0.986 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 2.825 -14.322 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.144 4.144 4 C -0.031 4.031 5 H 0.107 0.893 6 C -0.238 4.238 7 N -0.255 5.255 8 C -0.077 4.077 9 C 0.061 3.939 10 N -0.338 5.338 11 C -0.396 4.396 12 H 0.084 0.916 13 C -0.247 4.247 14 N -0.582 5.582 15 Si 0.797 3.203 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.200 1.200 19 C 0.018 3.982 20 C -0.075 4.075 21 H 0.082 0.918 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.012 0.988 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.611 2.335 -14.129 15.045 hybrid contribution 0.757 1.015 1.175 1.727 sum -3.854 3.350 -12.955 13.925 Atomic orbital electron populations 1.21762 0.95571 1.01612 1.01662 1.21365 0.95601 0.96547 1.01689 1.21674 0.93304 0.97450 1.01982 1.21885 0.95932 0.93484 0.91802 0.89289 1.22395 1.00978 0.98076 1.02318 1.62102 1.10501 1.50675 1.02179 1.22555 0.99329 0.94320 0.91499 1.20601 0.83383 0.95657 0.94216 1.44398 1.04858 1.68475 1.16082 1.19508 0.93340 1.39998 0.86744 0.91580 1.25804 0.98721 1.01040 0.99145 1.70191 1.20861 1.46578 1.20572 0.85315 0.77979 0.78834 0.78160 1.20511 1.21874 1.20028 1.21133 0.96633 0.93940 0.86481 1.22437 0.87845 0.98624 0.98549 0.91753 0.92760 0.93622 0.93485 0.91828 0.89987 0.92926 0.93334 0.90324 0.93789 0.96353 0.90378 0.98767 0.92853 0.94075 0.96851 0.92385 0.89172 0.95726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.91 71.98 0.71 -2.35 16 2 C -0.11 -2.75 5.82 30.59 0.18 -2.58 16 3 C -0.11 -2.50 4.50 30.59 0.14 -2.36 16 4 C 0.08 2.02 2.35 44.92 0.11 2.12 16 5 H 0.09 2.11 8.07 -2.38 -0.02 2.09 16 6 C -0.18 -4.41 8.51 71.98 0.61 -3.80 16 7 N -0.53 -18.27 4.07 -870.02 -3.54 -21.81 16 8 C 0.05 2.08 4.77 86.38 0.41 2.49 16 9 C 0.19 9.57 5.42 86.35 0.47 10.03 16 10 N -0.61 -32.46 3.04 -698.13 -2.12 -34.58 16 11 C -0.27 -15.15 9.63 84.03 0.81 -14.34 16 12 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 13 C -0.05 -2.98 4.94 84.86 0.42 -2.56 16 14 N -0.94 -56.91 11.15 21.65 0.24 -56.67 16 15 Si 0.97 45.79 29.59 68.60 2.03 47.82 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 C 0.14 6.28 6.69 86.35 0.58 6.86 16 20 C 0.05 1.93 5.14 86.38 0.44 2.37 16 21 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.05 1.43 7.75 -2.39 -0.02 1.41 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 1.38 6.03 -2.39 -0.01 1.36 16 28 H 0.05 1.26 6.69 -2.39 -0.02 1.24 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.21 6.56 -2.39 -0.02 1.19 16 31 H 0.02 0.76 6.71 -2.38 -0.02 0.74 16 32 H 0.08 2.85 5.87 -2.39 -0.01 2.84 16 33 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.05 3.04 6.12 -2.39 -0.01 3.03 16 35 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 2.43 7.95 -2.38 -0.02 2.41 16 38 H 0.09 2.62 8.05 -2.39 -0.02 2.61 16 39 H 0.02 0.90 6.81 -2.39 -0.02 0.88 16 Total: -1.00 -63.71 294.78 2.48 -61.23 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.99 Total: 8.13 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 4.88 Total: -4.12 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -5.42 Total: -113.06 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -63.71 2.48 -61.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218586582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.437 kcal (2) G-P(sol) polarization free energy of solvation -63.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds