Wall clock time and date at job start Mon Mar 30 2020 03:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47749 * 2 1 4 4 C 1.52992 * 109.47172 * 184.09620 * 3 2 1 5 5 H 1.08998 * 109.47266 * 57.05763 * 4 3 2 6 6 C 1.52997 * 109.47485 * 297.05544 * 4 3 2 7 7 N 1.46901 * 109.47224 * 177.05687 * 4 3 2 8 8 C 1.46902 * 111.00243 * 179.03022 * 7 4 3 9 9 C 1.53244 * 109.33926 * 187.25372 * 8 7 4 10 10 N 1.47083 * 108.51863 * 306.17074 * 9 8 7 11 11 C 1.36941 * 120.87481 * 231.18843 * 10 9 8 12 12 H 1.07994 * 120.00720 * 34.83657 * 11 10 9 13 13 C 1.38811 * 119.99464 * 214.83741 * 11 10 9 14 14 N 1.31619 * 120.00352 * 2.92717 * 13 11 10 15 15 Si 1.86800 * 119.99974 * 182.92834 * 13 11 10 16 16 H 1.48498 * 109.47417 * 180.02562 * 15 13 11 17 17 H 1.48507 * 109.46715 * 299.99976 * 15 13 11 18 18 H 1.48498 * 109.47444 * 59.99684 * 15 13 11 19 19 C 1.47073 * 118.24065 * 51.45741 * 10 9 8 20 20 C 1.46906 * 110.99873 * 303.32956 * 7 4 3 21 21 H 1.09003 * 109.46893 * 59.99810 * 1 2 3 22 22 H 1.09000 * 109.47756 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46798 * 300.00834 * 1 2 3 24 24 H 1.09001 * 109.46798 * 239.99166 * 2 1 3 25 25 H 1.09003 * 109.46893 * 120.00190 * 2 1 3 26 26 H 1.08997 * 109.47007 * 64.09529 * 3 2 1 27 27 H 1.08999 * 109.46779 * 304.09999 * 3 2 1 28 28 H 1.09001 * 109.47623 * 180.02562 * 6 4 3 29 29 H 1.08998 * 109.47047 * 300.00353 * 6 4 3 30 30 H 1.09004 * 109.46951 * 59.99833 * 6 4 3 31 31 H 1.08997 * 109.49305 * 67.29544 * 8 7 4 32 32 H 1.08994 * 109.51169 * 307.22390 * 8 7 4 33 33 H 1.08998 * 109.62944 * 186.46200 * 9 8 7 34 34 H 1.09001 * 109.78897 * 65.97412 * 9 8 7 35 35 H 0.96995 * 120.00078 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.62986 * 68.25054 * 19 10 9 37 37 H 1.08996 * 109.62919 * 188.83030 * 19 10 9 38 38 H 1.08997 * 109.49504 * 292.70734 * 20 7 4 39 39 H 1.09007 * 109.48833 * 52.75873 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5666 1.4435 -0.1030 5 1 3.8705 0.9056 -1.0010 6 6 4.1614 0.7573 1.1283 7 7 4.0516 2.8283 -0.1740 8 6 5.5181 2.8692 -0.2508 9 6 5.9916 4.3225 -0.1406 10 7 5.2929 5.1201 -1.1598 11 6 5.9888 5.9303 -2.0169 12 1 6.9652 5.6322 -2.3689 13 6 5.4390 7.1350 -2.4333 14 7 4.2747 7.5257 -1.9598 15 14 6.3515 8.2017 -3.6657 16 1 5.5585 9.4261 -3.9435 17 1 7.6728 8.5846 -3.1062 18 1 6.5492 7.4427 -4.9267 19 6 3.8267 5.0291 -1.2301 20 6 3.4388 3.5436 -1.3014 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 1.8933 -0.5140 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.7380 1.9346 0.9244 27 1 1.6181 1.9770 -0.8510 28 1 5.2490 0.7585 1.0551 29 1 3.8575 1.2952 2.0263 30 1 3.8015 -0.2702 1.1810 31 1 5.8442 2.4517 -1.2034 32 1 5.9418 2.2856 0.5664 33 1 7.0671 4.3711 -0.3114 34 1 5.7604 4.7118 0.8510 35 1 3.8908 8.3676 -2.2505 36 1 3.3886 5.4828 -0.3412 37 1 3.4701 5.5451 -2.1216 38 1 3.7939 3.1166 -2.2393 39 1 2.3543 3.4487 -1.2460 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218586654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:08 Heat of formation + Delta-G solvation = 15.092105 kcal Electronic energy + Delta-G solvation = -16529.445014 eV Core-core repulsion = 14086.248912 eV Total energy + Delta-G solvation = -2443.196102 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.61825 -35.83542 -33.69457 -31.52671 -30.34573 -29.42082 -26.53833 -25.93592 -23.10514 -22.33760 -21.44546 -19.78130 -19.01580 -16.76971 -15.45037 -15.22225 -14.66513 -14.40667 -13.90800 -13.51018 -13.38299 -13.14914 -13.01487 -12.39706 -12.19930 -12.06555 -11.92357 -11.27032 -11.13804 -10.90981 -10.85022 -10.76758 -10.55155 -10.33600 -10.31178 -10.14720 -9.95849 -9.57340 -9.48414 -8.44648 -7.67013 -6.47360 -5.73641 -3.24798 3.40251 3.45100 3.46110 4.39488 4.52629 4.98716 4.99744 5.19240 5.34606 5.45286 5.48515 5.54774 5.62875 5.77350 5.87057 5.89756 5.93558 6.00991 6.05005 6.16862 6.19167 6.23606 6.29166 6.36344 6.39193 6.50014 6.57138 6.67935 6.82844 7.03223 7.37104 7.75253 7.78889 7.82633 7.91729 8.55158 9.29162 9.88704 10.51977 11.34404 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.045224 B = 0.006222 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.994369 B = 4499.165733 C = 4913.455344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.115 4.115 4 C 0.078 3.922 5 H 0.029 0.971 6 C -0.144 4.144 7 N -0.528 5.528 8 C 0.042 3.958 9 C 0.149 3.851 10 N -0.596 5.596 11 C -0.255 4.255 12 H 0.061 0.939 13 C 0.008 3.992 14 N -0.906 5.906 15 Si 0.904 3.096 16 H -0.290 1.290 17 H -0.282 1.282 18 H -0.284 1.284 19 C 0.181 3.819 20 C 0.030 3.970 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.023 0.977 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.024 0.976 35 H 0.255 0.745 36 H 0.025 0.975 37 H 0.088 0.912 38 H 0.021 0.979 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 -13.177 3.904 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.152 4.152 4 C -0.031 4.031 5 H 0.047 0.953 6 C -0.202 4.202 7 N -0.253 5.253 8 C -0.088 4.088 9 C 0.022 3.978 10 N -0.320 5.320 11 C -0.384 4.384 12 H 0.079 0.921 13 C -0.191 4.191 14 N -0.550 5.550 15 Si 0.734 3.266 16 H -0.216 1.216 17 H -0.208 1.208 18 H -0.210 1.210 19 C 0.055 3.945 20 C -0.099 4.099 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.106 0.894 38 H 0.039 0.961 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.267 -12.756 4.283 14.116 hybrid contribution 0.681 0.180 -1.408 1.574 sum -3.586 -12.576 2.876 13.390 Atomic orbital electron populations 1.21767 0.96084 1.01116 1.01900 1.21562 0.95597 0.97275 1.01673 1.21716 0.94596 0.96044 1.02874 1.21610 0.94748 0.89947 0.96771 0.95319 1.21916 1.00579 0.99336 0.98359 1.62005 1.06772 1.12137 1.44435 1.22667 0.87611 0.99813 0.98678 1.20994 0.95347 0.88765 0.92665 1.44037 1.02097 1.50355 1.35472 1.19108 1.01733 0.97256 1.20351 0.92122 1.25291 0.97496 0.96439 0.99880 1.69923 1.17600 1.22181 1.45272 0.86354 0.79265 0.79958 0.81023 1.21562 1.20849 1.21018 1.20965 0.83855 0.88403 1.01282 1.23081 0.97765 0.98904 0.90124 0.92795 0.93152 0.92743 0.92479 0.91985 0.91263 0.91584 0.92750 0.91985 0.92754 0.95852 0.91756 0.92864 0.95789 0.93515 0.95672 0.89434 0.96109 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.34 5.54 -26.73 -0.15 -1.48 16 3 C -0.11 -1.54 4.48 -26.74 -0.12 -1.66 16 4 C 0.08 1.17 2.17 -67.72 -0.15 1.03 16 5 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 6 C -0.14 -1.86 8.66 37.16 0.32 -1.54 16 7 N -0.53 -9.87 4.50 -226.05 -1.02 -10.89 16 8 C 0.04 0.79 5.38 -3.70 -0.02 0.77 16 9 C 0.15 3.33 6.69 -3.60 -0.02 3.30 16 10 N -0.60 -15.69 3.02 -171.74 -0.52 -16.20 16 11 C -0.25 -7.20 9.59 -15.06 -0.14 -7.34 16 12 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 13 C 0.01 0.22 5.20 -17.43 -0.09 0.13 16 14 N -0.91 -26.73 10.95 55.49 0.61 -26.12 16 15 Si 0.90 21.99 29.55 -169.99 -5.02 16.96 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 C 0.18 4.54 5.36 -3.37 -0.02 4.52 16 20 C 0.03 0.62 5.36 -3.46 -0.02 0.60 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.63 6.72 -51.93 -0.35 0.28 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.95 6.04 -51.93 -0.31 0.63 16 28 H 0.05 0.70 6.23 -51.93 -0.32 0.38 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.59 6.60 -51.93 -0.34 0.25 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 1.06 5.92 -51.93 -0.31 0.75 16 33 H 0.05 1.14 7.95 -51.93 -0.41 0.73 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 2.41 6.28 -51.93 -0.33 2.09 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.19 5.79 -51.93 -0.30 0.89 16 LS Contribution 294.91 15.07 4.44 4.44 Total: -1.00 -29.60 294.91 -8.42 -38.02 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.87 Total: -3.44 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -0.04 Total: -2.78 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.93 Total: -53.21 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.60 -8.42 -38.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218586654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.116 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds