Wall clock time and date at job start Mon Mar 30 2020 03:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47749 * 2 1 4 4 C 1.52992 * 109.47172 * 184.09620 * 3 2 1 5 5 H 1.08998 * 109.47266 * 57.05763 * 4 3 2 6 6 C 1.52997 * 109.47485 * 297.05544 * 4 3 2 7 7 N 1.46901 * 109.47224 * 177.05687 * 4 3 2 8 8 C 1.46902 * 111.00243 * 179.03022 * 7 4 3 9 9 C 1.53244 * 109.33926 * 187.25372 * 8 7 4 10 10 N 1.47083 * 108.51863 * 306.17074 * 9 8 7 11 11 C 1.36941 * 120.87481 * 231.18843 * 10 9 8 12 12 H 1.07994 * 120.00720 * 34.83657 * 11 10 9 13 13 C 1.38811 * 119.99464 * 214.83741 * 11 10 9 14 14 N 1.31619 * 120.00352 * 2.92717 * 13 11 10 15 15 Si 1.86800 * 119.99974 * 182.92834 * 13 11 10 16 16 H 1.48498 * 109.47417 * 180.02562 * 15 13 11 17 17 H 1.48507 * 109.46715 * 299.99976 * 15 13 11 18 18 H 1.48498 * 109.47444 * 59.99684 * 15 13 11 19 19 C 1.47073 * 118.24065 * 51.45741 * 10 9 8 20 20 C 1.46906 * 110.99873 * 303.32956 * 7 4 3 21 21 H 1.09003 * 109.46893 * 59.99810 * 1 2 3 22 22 H 1.09000 * 109.47756 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46798 * 300.00834 * 1 2 3 24 24 H 1.09001 * 109.46798 * 239.99166 * 2 1 3 25 25 H 1.09003 * 109.46893 * 120.00190 * 2 1 3 26 26 H 1.08997 * 109.47007 * 64.09529 * 3 2 1 27 27 H 1.08999 * 109.46779 * 304.09999 * 3 2 1 28 28 H 1.09001 * 109.47623 * 180.02562 * 6 4 3 29 29 H 1.08998 * 109.47047 * 300.00353 * 6 4 3 30 30 H 1.09004 * 109.46951 * 59.99833 * 6 4 3 31 31 H 1.08997 * 109.49305 * 67.29544 * 8 7 4 32 32 H 1.08994 * 109.51169 * 307.22390 * 8 7 4 33 33 H 1.08998 * 109.62944 * 186.46200 * 9 8 7 34 34 H 1.09001 * 109.78897 * 65.97412 * 9 8 7 35 35 H 0.96995 * 120.00078 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.62986 * 68.25054 * 19 10 9 37 37 H 1.08996 * 109.62919 * 188.83030 * 19 10 9 38 38 H 1.08997 * 109.49504 * 292.70734 * 20 7 4 39 39 H 1.09007 * 109.48833 * 52.75873 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5666 1.4435 -0.1030 5 1 3.8705 0.9056 -1.0010 6 6 4.1614 0.7573 1.1283 7 7 4.0516 2.8283 -0.1740 8 6 5.5181 2.8692 -0.2508 9 6 5.9916 4.3225 -0.1406 10 7 5.2929 5.1201 -1.1598 11 6 5.9888 5.9303 -2.0169 12 1 6.9652 5.6322 -2.3689 13 6 5.4390 7.1350 -2.4333 14 7 4.2747 7.5257 -1.9598 15 14 6.3515 8.2017 -3.6657 16 1 5.5585 9.4261 -3.9435 17 1 7.6728 8.5846 -3.1062 18 1 6.5492 7.4427 -4.9267 19 6 3.8267 5.0291 -1.2301 20 6 3.4388 3.5436 -1.3014 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 1.8933 -0.5140 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.7380 1.9346 0.9244 27 1 1.6181 1.9770 -0.8510 28 1 5.2490 0.7585 1.0551 29 1 3.8575 1.2952 2.0263 30 1 3.8015 -0.2702 1.1810 31 1 5.8442 2.4517 -1.2034 32 1 5.9418 2.2856 0.5664 33 1 7.0671 4.3711 -0.3114 34 1 5.7604 4.7118 0.8510 35 1 3.8908 8.3676 -2.2505 36 1 3.3886 5.4828 -0.3412 37 1 3.4701 5.5451 -2.1216 38 1 3.7939 3.1166 -2.2393 39 1 2.3543 3.4487 -1.2460 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218586654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:07 Heat of formation + Delta-G solvation = -3.071163 kcal Electronic energy + Delta-G solvation = -16530.232633 eV Core-core repulsion = 14086.248912 eV Total energy + Delta-G solvation = -2443.983720 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11584 -37.36931 -35.18784 -33.26693 -31.99476 -30.98148 -27.91213 -27.50784 -24.87682 -23.97210 -22.64226 -21.14012 -20.66718 -18.74522 -17.12741 -16.48432 -16.30460 -15.79835 -15.30787 -15.28734 -15.00982 -14.94741 -14.19483 -13.88540 -13.39182 -13.37194 -13.09154 -12.83973 -12.73427 -12.58426 -12.31791 -12.15933 -12.02346 -11.96516 -11.87207 -11.73943 -11.34690 -11.29713 -11.04693 -10.58644 -9.20636 -8.56320 -7.87945 -5.43952 1.45588 1.48165 1.55015 2.48968 2.98855 3.29205 3.69673 3.90689 4.01278 4.21937 4.34745 4.36708 4.39297 4.46055 4.56777 4.62400 4.66992 4.75575 4.83099 4.91226 4.95561 4.98431 5.05481 5.09260 5.17117 5.21588 5.31985 5.34689 5.39802 5.51454 5.52599 5.60184 5.70764 6.25272 6.38027 6.42214 7.14974 7.81878 8.40401 9.17849 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.045224 B = 0.006222 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.994369 B = 4499.165733 C = 4913.455344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.111 4.111 4 C 0.076 3.924 5 H 0.027 0.973 6 C -0.139 4.139 7 N -0.537 5.537 8 C 0.053 3.947 9 C 0.144 3.856 10 N -0.616 5.616 11 C -0.272 4.272 12 H 0.063 0.937 13 C -0.045 4.045 14 N -0.936 5.936 15 Si 0.973 3.027 16 H -0.291 1.291 17 H -0.274 1.274 18 H -0.276 1.276 19 C 0.189 3.811 20 C 0.048 3.952 21 H 0.047 0.953 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.016 0.984 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.015 0.985 35 H 0.252 0.748 36 H -0.003 1.003 37 H 0.056 0.944 38 H 0.011 0.989 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.732 -15.030 4.161 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.149 4.149 4 C -0.031 4.031 5 H 0.045 0.955 6 C -0.196 4.196 7 N -0.263 5.263 8 C -0.076 4.076 9 C 0.019 3.981 10 N -0.340 5.340 11 C -0.402 4.402 12 H 0.081 0.919 13 C -0.241 4.241 14 N -0.582 5.582 15 Si 0.800 3.200 16 H -0.217 1.217 17 H -0.200 1.200 18 H -0.202 1.202 19 C 0.063 3.937 20 C -0.081 4.081 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.034 0.966 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.061 0.939 36 H 0.015 0.985 37 H 0.074 0.926 38 H 0.029 0.971 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.942 -14.644 4.555 15.835 hybrid contribution 0.580 0.728 -1.438 1.713 sum -3.363 -13.916 3.117 14.652 Atomic orbital electron populations 1.21765 0.95301 1.02086 1.01696 1.21519 0.96257 0.95273 1.02424 1.21686 0.93405 0.97861 1.01927 1.21761 0.95875 0.87570 0.97938 0.95481 1.21885 1.00552 1.00437 0.96727 1.61979 1.06537 1.14653 1.43109 1.22515 0.88000 0.97515 0.99586 1.21139 0.95558 0.90334 0.91092 1.44320 1.02554 1.50831 1.36333 1.19457 1.01985 0.97854 1.20919 0.91913 1.26082 0.98273 0.97706 1.02005 1.70111 1.18990 1.22349 1.46713 0.85271 0.78035 0.77864 0.78786 1.21707 1.20015 1.20188 1.20693 0.83556 0.91066 0.98353 1.22732 0.98930 0.95900 0.90568 0.93337 0.91602 0.92693 0.92204 0.90667 0.91844 0.92938 0.92587 0.92303 0.90163 0.96554 0.88500 0.92305 0.96711 0.93912 0.98484 0.92604 0.97077 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.91 71.98 0.71 -1.87 16 2 C -0.12 -2.21 5.54 30.59 0.17 -2.04 16 3 C -0.11 -2.77 4.48 30.59 0.14 -2.64 16 4 C 0.08 2.13 2.17 44.91 0.10 2.23 16 5 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 6 C -0.14 -3.12 8.66 71.98 0.62 -2.49 16 7 N -0.54 -19.50 4.50 -869.08 -3.91 -23.41 16 8 C 0.05 1.94 5.38 86.38 0.46 2.40 16 9 C 0.14 6.44 6.69 86.35 0.58 7.02 16 10 N -0.62 -33.06 3.02 -697.25 -2.10 -35.16 16 11 C -0.27 -15.61 9.59 84.03 0.81 -14.80 16 12 H 0.06 3.50 7.83 -2.91 -0.02 3.47 16 13 C -0.04 -2.58 5.20 84.86 0.44 -2.14 16 14 N -0.94 -56.85 10.95 21.65 0.24 -56.62 16 15 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 16 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 C 0.19 9.82 5.36 86.50 0.46 10.28 16 20 C 0.05 1.98 5.36 86.54 0.46 2.45 16 21 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.24 6.72 -2.39 -0.02 1.22 16 26 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 1.44 6.04 -2.39 -0.01 1.43 16 28 H 0.06 1.24 6.23 -2.39 -0.01 1.23 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.41 6.60 -2.38 -0.02 1.39 16 31 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 2.93 5.92 -2.39 -0.01 2.91 16 33 H 0.06 2.50 7.95 -2.39 -0.02 2.48 16 34 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.06 3.22 6.28 -2.39 -0.02 3.20 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.08 3.05 5.79 -2.38 -0.01 3.04 16 Total: -1.00 -64.31 294.91 2.20 -62.11 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 0.99 Total: 6.99 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 4.96 Total: -1.60 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -5.77 Total: -115.19 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -64.31 2.20 -62.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218586654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.041 kcal (2) G-P(sol) polarization free energy of solvation -64.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds