Wall clock time and date at job start Mon Mar 30 2020 03:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.46668 * 119.99673 * 2 1 3 5 5 C 1.53000 * 109.46788 * 175.00200 * 4 2 1 6 6 N 1.46899 * 109.47378 * 180.02562 * 5 4 2 7 7 C 1.46962 * 110.99604 * 313.79840 * 6 5 4 8 8 C 1.53051 * 109.36359 * 176.81311 * 7 6 5 9 9 N 1.46956 * 109.36687 * 58.40092 * 8 7 6 10 10 C 1.46963 * 110.89784 * 300.68762 * 9 8 7 11 11 H 1.08992 * 109.47287 * 299.33311 * 10 9 8 12 12 C 1.50693 * 109.50820 * 179.26408 * 10 9 8 13 13 H 1.08003 * 120.00519 * 240.10535 * 12 10 9 14 14 C 1.37876 * 119.99912 * 60.10204 * 12 10 9 15 15 N 1.31513 * 120.00009 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00039 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47239 * 60.00374 * 16 14 12 18 18 H 1.48503 * 109.47228 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47301 * 299.99967 * 16 14 12 20 20 C 1.46956 * 111.00293 * 190.00028 * 6 5 4 21 21 H 1.09002 * 109.46966 * 300.00225 * 1 2 3 22 22 H 1.09003 * 109.46805 * 60.00298 * 1 2 3 23 23 H 1.08998 * 109.46904 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47415 * 239.99486 * 2 1 3 25 25 H 1.09001 * 109.47284 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.47018 * 299.99572 * 3 2 1 27 27 H 1.09002 * 109.47376 * 59.99462 * 3 2 1 28 28 H 1.09001 * 109.47199 * 55.00234 * 4 2 1 29 29 H 1.08994 * 109.47725 * 294.99813 * 4 2 1 30 30 H 1.08999 * 109.47515 * 59.99593 * 5 4 2 31 31 H 1.09004 * 109.47205 * 300.00046 * 5 4 2 32 32 H 1.09001 * 109.48625 * 296.77747 * 7 6 5 33 33 H 1.09001 * 109.49014 * 56.84362 * 7 6 5 34 34 H 1.09002 * 109.48907 * 178.36861 * 8 7 6 35 35 H 1.09002 * 109.48601 * 298.40885 * 8 7 6 36 36 H 1.00899 * 111.00438 * 64.54446 * 9 8 7 37 37 H 0.97000 * 120.00014 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.48806 * 303.15319 * 20 6 5 39 39 H 1.09002 * 109.49141 * 63.19591 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 7 4.0544 -1.5239 2.3873 7 6 3.4194 -0.9899 3.6002 8 6 3.8949 -1.7890 4.8158 9 7 5.3590 -1.7060 4.9112 10 6 5.9945 -2.2397 3.6984 11 1 5.7200 -3.2873 3.5753 12 6 7.4918 -2.1230 3.8217 13 1 8.0488 -1.5378 3.1050 14 6 8.1508 -2.7634 4.8497 15 7 7.4726 -3.4757 5.7227 16 14 10.0070 -2.6194 5.0022 17 1 10.3805 -1.1920 5.1709 18 1 10.4683 -3.3939 6.1823 19 1 10.6478 -3.1571 3.7753 20 6 5.5185 -1.4409 2.4826 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6053 -1.7198 1.2953 29 1 1.7516 -0.1583 2.1370 30 1 3.9994 0.1675 1.1421 31 1 3.8532 -1.3939 0.3004 32 1 3.6942 0.0576 3.7235 33 1 2.3363 -1.0739 3.5108 34 1 3.4476 -1.3762 5.7201 35 1 3.5958 -2.8314 4.7054 36 1 5.6568 -0.7582 5.0879 37 1 7.9361 -3.9259 6.4461 38 1 5.9658 -1.8537 1.5784 39 1 5.8173 -0.3984 2.5929 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219506209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:38 Heat of formation + Delta-G solvation = -8.559350 kcal Electronic energy + Delta-G solvation = -16310.599190 eV Core-core repulsion = 13866.377484 eV Total energy + Delta-G solvation = -2444.221706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.67833 -36.50358 -33.64370 -32.11942 -30.02261 -28.53020 -27.25364 -25.52458 -23.95860 -22.31082 -21.12928 -19.67402 -19.28293 -16.56230 -15.48252 -15.23941 -14.62688 -14.35722 -13.89295 -13.68240 -13.56843 -13.34701 -13.15077 -12.58942 -12.28765 -12.12055 -11.68650 -11.62726 -11.19236 -10.91019 -10.87553 -10.82988 -10.68694 -10.53031 -10.43919 -10.30398 -9.96762 -9.59631 -8.90006 -8.36758 -7.74401 -6.73476 -5.83561 -3.98695 3.37422 3.42461 3.44354 4.37207 4.55541 4.81559 4.89014 4.96382 5.31619 5.34525 5.48763 5.56157 5.59904 5.68966 5.74198 5.75290 5.81247 5.88034 5.97999 6.04698 6.10496 6.13167 6.17125 6.32896 6.36567 6.40761 6.43845 6.48233 6.86235 6.88412 7.43628 7.70471 7.80218 7.96401 8.28240 8.65202 8.99359 9.16929 9.69910 11.20835 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.053536 B = 0.005570 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.890017 B = 5025.587040 C = 5333.485737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.116 4.116 5 C 0.054 3.946 6 N -0.536 5.536 7 C 0.016 3.984 8 C 0.058 3.942 9 N -0.649 5.649 10 C 0.228 3.772 11 H 0.046 0.954 12 C -0.541 4.541 13 H 0.052 0.948 14 C 0.085 3.915 15 N -0.846 5.846 16 Si 0.884 3.116 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.030 3.970 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.018 0.982 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.317 0.683 37 H 0.256 0.744 38 H 0.064 0.936 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.260 6.917 -8.168 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.154 4.154 5 C -0.074 4.074 6 N -0.261 5.261 7 C -0.114 4.114 8 C -0.073 4.073 9 N -0.276 5.276 10 C 0.120 3.880 11 H 0.064 0.936 12 C -0.581 4.581 13 H 0.070 0.930 14 C -0.123 4.123 15 N -0.480 5.480 16 Si 0.711 3.289 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.099 4.099 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.133 0.867 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -11.310 5.681 -7.658 14.793 hybrid contribution 1.041 1.746 -0.535 2.102 sum -10.269 7.427 -8.192 15.091 Atomic orbital electron populations 1.21826 0.95398 1.01638 1.01409 1.21104 0.95498 0.96263 0.98708 1.21897 1.01348 0.96080 1.01292 1.21785 0.95522 1.00767 0.97284 1.22185 0.94474 0.96397 0.94391 1.62262 1.07578 1.54898 1.01364 1.23004 0.98917 0.96479 0.92990 1.22084 0.92119 0.99629 0.93475 1.61052 1.01639 1.24584 1.40357 1.19142 0.93053 0.94313 0.81507 0.93639 1.20882 0.90799 1.33368 1.13010 0.92971 1.24940 0.97279 0.94548 0.95486 1.70105 1.34603 1.29663 1.13644 0.86835 0.86600 0.78029 0.77392 1.20440 1.21352 1.20387 1.23093 0.84783 0.98936 1.03093 0.92847 0.92990 0.92687 0.91293 0.92447 0.93069 0.92913 0.91272 0.91824 0.95519 0.91460 0.96342 0.91476 0.92557 0.91379 0.86682 0.93388 0.91792 0.96473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 2 C -0.10 -1.03 2.92 -90.62 -0.26 -1.29 16 3 C -0.15 -1.53 8.95 37.16 0.33 -1.20 16 4 C -0.12 -1.48 3.94 -26.73 -0.11 -1.59 16 5 C 0.05 0.83 5.03 -3.82 -0.02 0.81 16 6 N -0.54 -10.13 4.86 -234.46 -1.14 -11.27 16 7 C 0.02 0.29 4.92 -3.76 -0.02 0.27 16 8 C 0.06 1.17 6.72 -3.77 -0.03 1.14 16 9 N -0.65 -15.64 5.88 -107.81 -0.63 -16.27 16 10 C 0.23 5.80 2.45 -68.80 -0.17 5.63 16 11 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 12 C -0.54 -14.97 8.69 -34.44 -0.30 -15.27 16 13 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 14 C 0.08 2.37 5.39 -17.82 -0.10 2.27 16 15 N -0.85 -24.79 12.77 55.43 0.71 -24.08 16 16 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 C 0.03 0.65 4.80 -3.76 -0.02 0.64 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.63 6.56 -51.93 -0.34 0.29 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.83 6.26 -51.93 -0.33 0.50 16 30 H 0.03 0.42 6.50 -51.93 -0.34 0.08 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 1.05 5.99 -51.93 -0.31 0.74 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.32 7.52 8.79 -39.29 -0.35 7.18 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 301.52 15.07 4.54 4.54 Total: -1.00 -28.68 301.52 -9.00 -37.68 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.12 Total: 2.69 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -0.34 Total: -9.58 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -1.06 Total: -51.62 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.68 -9.00 -37.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219506209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.121 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds