Wall clock time and date at job start Mon Mar 30 2020 03:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47213 * 2 1 4 4 C 1.52995 * 109.47095 * 120.00160 * 2 1 3 5 5 C 1.53008 * 109.47218 * 64.99742 * 4 2 1 6 6 N 1.46899 * 109.47032 * 180.02562 * 5 4 2 7 7 C 1.46964 * 111.00041 * 293.95407 * 6 5 4 8 8 C 1.53044 * 109.36663 * 183.19239 * 7 6 5 9 9 N 1.46965 * 109.36190 * 301.59939 * 8 7 6 10 10 C 1.46954 * 110.88048 * 59.32041 * 9 8 7 11 11 H 1.09002 * 109.48875 * 60.64714 * 10 9 8 12 12 C 1.50696 * 109.48712 * 180.68929 * 10 9 8 13 13 H 1.08005 * 119.99819 * 119.95425 * 12 10 9 14 14 C 1.37879 * 120.00436 * 299.95588 * 12 10 9 15 15 N 1.31516 * 119.99746 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00168 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47350 * 90.00322 * 16 14 12 18 18 H 1.48501 * 109.47165 * 210.00036 * 16 14 12 19 19 H 1.48496 * 109.47552 * 330.00352 * 16 14 12 20 20 C 1.46952 * 111.00198 * 57.75366 * 6 5 4 21 21 H 1.09001 * 109.47240 * 299.99767 * 1 2 3 22 22 H 1.08998 * 109.47230 * 60.00068 * 1 2 3 23 23 H 1.09004 * 109.47267 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46539 * 239.99980 * 2 1 3 25 25 H 1.08991 * 109.46856 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.46966 * 300.00093 * 3 2 1 27 27 H 1.09001 * 109.46827 * 59.99980 * 3 2 1 28 28 H 1.08999 * 109.47226 * 305.00164 * 4 2 1 29 29 H 1.08993 * 109.47441 * 184.99925 * 4 2 1 30 30 H 1.08999 * 109.46677 * 60.00086 * 5 4 2 31 31 H 1.09002 * 109.46840 * 299.99846 * 5 4 2 32 32 H 1.09002 * 109.48740 * 63.22286 * 7 6 5 33 33 H 1.09006 * 109.48425 * 303.15865 * 7 6 5 34 34 H 1.08999 * 109.49104 * 181.63438 * 8 7 6 35 35 H 1.08997 * 109.50684 * 61.57124 * 8 7 6 36 36 H 1.00904 * 110.99662 * 295.44987 * 9 8 7 37 37 H 0.96996 * 120.00124 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.48996 * 56.84747 * 20 6 5 39 39 H 1.08996 * 109.48784 * 296.77741 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 7 2.1243 -2.8879 2.3876 7 6 3.5932 -2.9293 2.4097 8 6 4.0602 -3.7256 3.6304 9 7 3.5354 -3.0982 4.8514 10 6 2.0666 -3.0569 4.8293 11 1 1.6750 -4.0725 4.7724 12 6 1.5634 -2.3936 6.0854 13 1 0.9690 -1.4942 6.0202 14 6 1.8618 -2.9348 7.3179 15 7 2.5861 -4.0297 7.3973 16 14 1.2386 -2.1122 8.8749 17 1 -0.0919 -2.6680 9.2299 18 1 2.1928 -2.3651 9.9843 19 1 1.1195 -0.6494 8.6483 20 6 1.5996 -2.2605 3.6085 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6054 -0.2618 2.1369 29 1 3.1263 -0.6444 1.2951 30 1 2.0698 -2.6550 0.3002 31 1 0.5489 -2.2724 1.1421 32 1 3.9848 -1.9136 2.4666 33 1 3.9571 -3.4094 1.5013 34 1 5.1496 -3.7331 3.6648 35 1 3.6915 -4.7490 3.5602 36 1 3.9213 -2.1745 4.9778 37 1 2.7958 -4.4107 8.2643 38 1 0.5102 -2.2531 3.5742 39 1 1.9686 -1.2373 3.6790 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219506282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:40 Heat of formation + Delta-G solvation = -9.683346 kcal Electronic energy + Delta-G solvation = -16504.239221 eV Core-core repulsion = 14059.968775 eV Total energy + Delta-G solvation = -2444.270446 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.81593 -36.37095 -33.63847 -32.14485 -29.90524 -28.35607 -27.18327 -25.32658 -24.41446 -22.08453 -21.19383 -20.24219 -18.82836 -16.53387 -15.37849 -15.06948 -14.61502 -14.35148 -14.12474 -13.71031 -13.45505 -13.17278 -13.09152 -12.56593 -12.29757 -12.04216 -11.83030 -11.50285 -11.17255 -10.98244 -10.89298 -10.79876 -10.71434 -10.62161 -10.46568 -10.12348 -9.95958 -9.61321 -8.89498 -8.36851 -7.70411 -6.73195 -5.83770 -3.98661 3.35762 3.42849 3.44929 4.43718 4.59653 4.83673 4.89278 4.99794 5.31931 5.35254 5.53994 5.59130 5.62669 5.70774 5.77408 5.79603 5.83932 5.88594 5.99134 6.06944 6.11104 6.16374 6.19630 6.31510 6.37658 6.44347 6.49390 6.52951 6.87309 6.89682 7.43656 7.70984 7.80415 7.96527 8.28421 8.65386 8.99354 9.17313 9.69970 11.20686 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030882 B = 0.006868 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.445595 B = 4075.989093 C = 4620.008459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.153 4.153 5 C 0.054 3.946 6 N -0.535 5.535 7 C 0.018 3.982 8 C 0.058 3.942 9 N -0.648 5.648 10 C 0.226 3.774 11 H 0.045 0.955 12 C -0.540 4.540 13 H 0.052 0.948 14 C 0.084 3.916 15 N -0.846 5.846 16 Si 0.883 3.117 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.029 3.971 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.316 0.684 37 H 0.255 0.745 38 H 0.062 0.938 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 6.252 -13.057 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.193 4.193 5 C -0.074 4.074 6 N -0.258 5.258 7 C -0.112 4.112 8 C -0.073 4.073 9 N -0.276 5.276 10 C 0.118 3.882 11 H 0.063 0.937 12 C -0.579 4.579 13 H 0.071 0.929 14 C -0.123 4.123 15 N -0.480 5.480 16 Si 0.710 3.290 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.100 4.100 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.133 0.867 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.295 5.001 -12.541 13.505 hybrid contribution -0.149 2.075 0.149 2.085 sum -0.444 7.075 -12.392 14.277 Atomic orbital electron populations 1.21887 0.95322 1.01961 1.01382 1.21045 0.95881 0.95884 0.98308 1.21842 1.00765 0.96336 1.01464 1.22326 1.00938 0.97892 0.98099 1.22270 1.00458 0.90988 0.93723 1.62422 1.08240 1.52611 1.02515 1.22934 0.88539 0.98878 1.00850 1.22078 0.97919 0.99075 0.88224 1.61055 1.09542 1.24742 1.32241 1.19160 0.83877 0.95781 0.89368 0.93737 1.20917 1.34654 1.11786 0.90546 0.92940 1.24944 0.94239 0.94573 0.98532 1.70117 1.35074 1.19124 1.23707 0.86784 0.78607 0.79899 0.83664 1.20773 1.21296 1.20125 1.23089 0.99415 0.96472 0.91052 0.92701 0.93162 0.92290 0.91611 0.92970 0.93027 0.92744 0.91402 0.92271 0.91886 0.91064 0.95821 0.92247 0.92557 0.91405 0.86695 0.93457 0.91912 0.95890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.95 37.16 0.33 -1.27 16 2 C -0.09 -1.04 2.92 -90.62 -0.26 -1.31 16 3 C -0.15 -1.53 9.19 37.16 0.34 -1.19 16 4 C -0.15 -2.13 3.97 -26.73 -0.11 -2.24 16 5 C 0.05 0.82 5.13 -3.82 -0.02 0.80 16 6 N -0.53 -9.96 4.92 -234.46 -1.15 -11.12 16 7 C 0.02 0.32 5.26 -3.77 -0.02 0.30 16 8 C 0.06 1.16 6.72 -3.77 -0.03 1.14 16 9 N -0.65 -15.53 5.87 -107.81 -0.63 -16.16 16 10 C 0.23 5.72 2.45 -68.81 -0.17 5.55 16 11 H 0.04 1.28 8.14 -51.93 -0.42 0.86 16 12 C -0.54 -14.85 8.69 -34.44 -0.30 -15.15 16 13 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 14 C 0.08 2.35 5.39 -17.82 -0.10 2.25 16 15 N -0.85 -24.76 12.77 55.43 0.71 -24.06 16 16 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.03 0.61 4.28 -3.77 -0.02 0.60 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.06 6.44 -51.93 -0.33 0.73 16 29 H 0.06 0.85 6.62 -51.93 -0.34 0.51 16 30 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.07 1.06 6.56 -51.93 -0.34 0.72 16 32 H 0.02 0.42 6.63 -51.93 -0.34 0.07 16 33 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.32 7.47 8.79 -39.29 -0.35 7.12 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.02 0.49 6.45 -51.93 -0.33 0.16 16 LS Contribution 299.12 15.07 4.51 4.51 Total: -1.00 -28.51 299.12 -8.93 -37.44 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.99 Total: 3.64 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -0.34 Total: -10.52 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -1.08 Total: -51.33 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.51 -8.93 -37.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219506282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.758 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds