Wall clock time and date at job start Mon Mar 30 2020 03:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47859 * 179.97438 * 4 3 2 6 6 C 1.46957 * 110.99602 * 293.80438 * 5 4 3 7 7 C 1.53057 * 109.36167 * 176.80763 * 6 5 4 8 8 H 1.08998 * 109.50610 * 298.41563 * 7 6 5 9 9 C 1.50706 * 109.48570 * 178.36731 * 7 6 5 10 10 H 1.08000 * 120.00313 * 0.10890 * 9 7 6 11 11 C 1.37881 * 119.99580 * 180.10882 * 9 7 6 12 12 N 1.31514 * 119.99926 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 119.99702 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47262 * 60.00204 * 13 11 9 15 15 H 1.48503 * 109.47041 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47368 * 299.99576 * 13 11 9 17 17 N 1.46955 * 109.36591 * 58.39879 * 7 6 5 18 18 C 1.46958 * 110.87954 * 300.68030 * 17 7 6 19 19 C 1.46955 * 111.00510 * 170.00059 * 5 4 3 20 20 H 1.09001 * 109.48877 * 303.17693 * 19 5 4 21 21 C 1.53000 * 109.48632 * 63.22302 * 19 5 4 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 4 3 2 30 30 H 1.09001 * 109.47066 * 60.00169 * 4 3 2 31 31 H 1.08999 * 109.49172 * 296.77017 * 6 5 4 32 32 H 1.08997 * 109.49268 * 56.84034 * 6 5 4 33 33 H 0.97000 * 119.99902 * 180.02562 * 12 11 9 34 34 H 1.00897 * 110.99779 * 176.81285 * 17 7 6 35 35 H 1.08997 * 109.48699 * 299.35481 * 18 17 7 36 36 H 1.08997 * 109.48917 * 179.28618 * 18 17 7 37 37 H 1.08995 * 109.47053 * 60.00356 * 21 19 5 38 38 H 1.09004 * 109.46583 * 179.97438 * 21 19 5 39 39 H 1.09000 * 109.47170 * 299.99695 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8276 -0.0013 6 6 3.7126 3.5082 -1.2566 7 6 4.1689 4.9675 -1.1856 8 1 3.6504 5.4717 -0.3701 9 6 3.8504 5.6577 -2.4868 10 1 3.3689 5.1112 -3.2843 11 6 4.1737 6.9870 -2.6592 12 7 4.7595 7.6525 -1.6879 13 14 3.7795 7.8423 -4.2724 14 1 2.3148 7.7953 -4.5126 15 1 4.2241 9.2576 -4.2037 16 1 4.4857 7.1545 -5.3829 17 7 5.6184 5.0137 -0.9480 18 6 5.9654 4.3330 0.3074 19 6 5.5091 2.8738 0.2363 20 1 5.7395 2.3743 1.1773 21 6 6.2368 2.1666 -0.9087 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.9336 0.9286 0.8891 30 1 3.9329 0.9289 -0.8909 31 1 4.2107 3.0117 -2.0893 32 1 2.6332 3.4715 -1.4039 33 1 4.9866 8.5877 -1.8091 34 1 5.9546 5.9650 -0.9484 35 1 5.4673 4.8296 1.1400 36 1 7.0447 4.3697 0.4546 37 1 6.0069 2.6669 -1.8493 38 1 7.3119 2.2015 -0.7324 39 1 5.9103 1.1280 -0.9602 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219506376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:43 Heat of formation + Delta-G solvation = -11.155440 kcal Electronic energy + Delta-G solvation = -16616.257613 eV Core-core repulsion = 14171.923333 eV Total energy + Delta-G solvation = -2444.334281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.81106 -35.45820 -33.67258 -32.07629 -30.70055 -28.68680 -26.93675 -24.69832 -24.33912 -22.10040 -21.02921 -20.49086 -17.68053 -16.57356 -15.63576 -15.38392 -14.55703 -14.48205 -13.73791 -13.61786 -13.39977 -13.18215 -13.02400 -12.26930 -12.13013 -11.97783 -11.72418 -11.27097 -11.08395 -10.98723 -10.93487 -10.79773 -10.66453 -10.47061 -10.35767 -10.18224 -9.70832 -9.31820 -9.05121 -8.55804 -7.59687 -6.78671 -6.07184 -4.09902 3.32552 3.36856 3.39781 4.38513 4.53604 5.07086 5.16129 5.19555 5.25764 5.50400 5.57364 5.66796 5.81553 5.85035 5.88588 5.92299 6.00560 6.04292 6.12304 6.20740 6.29423 6.29997 6.43223 6.46809 6.57330 6.58254 6.63574 6.73620 6.95370 7.06824 7.52427 7.78855 7.81247 7.95144 8.25362 8.69826 9.02177 9.16136 9.57788 11.03434 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.007682 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.987303 B = 3644.229539 C = 4407.750507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.056 3.944 5 N -0.537 5.537 6 C 0.066 3.934 7 C 0.220 3.780 8 H 0.002 0.998 9 C -0.505 4.505 10 H 0.058 0.942 11 C 0.068 3.932 12 N -0.900 5.900 13 Si 0.898 3.102 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.277 1.277 17 N -0.682 5.682 18 C 0.061 3.939 19 C 0.088 3.912 20 H 0.065 0.935 21 C -0.173 4.173 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.264 0.736 34 H 0.362 0.638 35 H 0.019 0.981 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -11.426 3.653 12.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.072 4.072 5 N -0.261 5.261 6 C -0.062 4.062 7 C 0.112 3.888 8 H 0.020 0.980 9 C -0.545 4.545 10 H 0.076 0.924 11 C -0.134 4.134 12 N -0.541 5.541 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 N -0.320 5.320 18 C -0.070 4.070 19 C -0.021 4.021 20 H 0.083 0.917 21 C -0.232 4.232 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.186 0.814 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.140 -11.521 3.693 12.286 hybrid contribution -0.027 0.710 -0.803 1.073 sum -2.167 -10.810 2.890 11.398 Atomic orbital electron populations 1.21758 0.96050 1.01060 1.01960 1.21488 0.95698 0.97312 1.01498 1.21628 0.95182 0.95813 1.02911 1.22055 0.95062 0.90441 0.99686 1.62424 1.12909 1.13897 1.36857 1.22369 0.99033 0.96646 0.88114 1.19012 0.84957 0.88966 0.95877 0.97991 1.21085 1.38445 0.94924 1.00001 0.92403 1.24965 0.94570 0.97197 0.96635 1.69670 1.42279 1.10070 1.32032 0.86563 0.78622 0.78317 0.83879 1.20346 1.21334 1.20210 1.60974 1.17135 1.24140 1.29719 1.21849 0.98018 0.93336 0.93774 1.21672 0.87033 0.96716 0.96719 0.91719 1.22299 1.00017 0.98788 1.02070 0.93195 0.92772 0.92701 0.92380 0.92412 0.91649 0.91433 0.92012 0.95384 0.95021 0.91968 0.92617 0.81423 0.96278 0.92683 0.90337 0.93183 0.94376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.40 5.93 -26.73 -0.16 -1.56 16 3 C -0.12 -1.68 5.15 -26.74 -0.14 -1.81 16 4 C 0.06 0.88 4.35 -3.83 -0.02 0.86 16 5 N -0.54 -10.28 4.66 -226.49 -1.06 -11.33 16 6 C 0.07 1.44 4.25 -3.76 -0.02 1.42 16 7 C 0.22 5.65 2.55 -68.80 -0.18 5.47 16 8 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 9 C -0.51 -13.93 8.77 -34.44 -0.30 -14.23 16 10 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 11 C 0.07 1.86 5.34 -17.82 -0.10 1.77 16 12 N -0.90 -25.40 11.49 55.43 0.64 -24.76 16 13 Si 0.90 21.28 29.54 -169.99 -5.02 16.25 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 N -0.68 -16.62 5.85 -107.81 -0.63 -17.25 16 18 C 0.06 1.26 6.15 -3.77 -0.02 1.24 16 19 C 0.09 1.61 2.96 -67.66 -0.20 1.41 16 20 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 21 C -0.17 -3.01 8.37 37.16 0.31 -2.70 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.02 6.49 -51.93 -0.34 0.68 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.89 8.03 -51.93 -0.42 0.47 16 30 H 0.03 0.44 6.90 -51.93 -0.36 0.09 16 31 H 0.03 0.71 6.35 -51.93 -0.33 0.38 16 32 H 0.06 1.34 6.34 -51.93 -0.33 1.01 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.36 9.58 6.72 -39.29 -0.26 9.32 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.59 5.94 -51.93 -0.31 1.28 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.04 0.59 6.71 -51.93 -0.35 0.25 16 LS Contribution 295.60 15.07 4.45 4.45 Total: -1.00 -27.58 295.60 -8.94 -36.52 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.88 Total: 5.44 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -0.45 Total: -9.33 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -1.05 Total: -53.34 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.58 -8.94 -36.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219506376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.366 kcal (2) G-P(sol) polarization free energy of solvation -27.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds