Wall clock time and date at job start Mon Mar 30 2020 03:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 C 1.52998 * 109.47061 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47308 * 180.02562 * 4 3 2 6 6 C 1.46956 * 110.99901 * 66.04754 * 5 4 3 7 7 C 1.53047 * 109.36680 * 183.18988 * 6 5 4 8 8 H 1.09001 * 109.48917 * 61.56914 * 7 6 5 9 9 C 1.50703 * 109.50733 * 181.62040 * 7 6 5 10 10 H 1.08000 * 120.00061 * 359.90334 * 9 7 6 11 11 C 1.37880 * 119.99751 * 179.90208 * 9 7 6 12 12 N 1.31513 * 119.99958 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 119.99899 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47002 * 59.99872 * 13 11 9 15 15 H 1.48497 * 109.47273 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46792 * 299.99915 * 13 11 9 17 17 N 1.46953 * 109.36497 * 301.59896 * 7 6 5 18 18 C 1.46956 * 110.88107 * 59.32178 * 17 7 6 19 19 C 1.46953 * 111.00345 * 189.84718 * 5 4 3 20 20 H 1.09001 * 109.49100 * 296.78280 * 19 5 4 21 21 C 1.53005 * 109.48688 * 56.84522 * 19 5 4 22 22 H 1.09004 * 109.46761 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46725 * 299.99525 * 1 2 3 24 24 H 1.08995 * 109.47096 * 59.99524 * 1 2 3 25 25 H 1.09001 * 109.46939 * 240.00984 * 2 1 3 26 26 H 1.09002 * 109.47457 * 120.00492 * 2 1 3 27 27 H 1.09001 * 109.46963 * 60.00621 * 3 2 1 28 28 H 1.08995 * 109.47554 * 300.00195 * 3 2 1 29 29 H 1.09002 * 109.47416 * 60.00757 * 4 3 2 30 30 H 1.08997 * 109.47782 * 300.00187 * 4 3 2 31 31 H 1.09007 * 109.48628 * 63.22067 * 6 5 4 32 32 H 1.09006 * 109.49098 * 303.16144 * 6 5 4 33 33 H 0.97006 * 119.99614 * 179.97438 * 12 11 9 34 34 H 1.00901 * 111.00173 * 295.45277 * 17 7 6 35 35 H 1.09002 * 109.48908 * 60.64267 * 18 17 7 36 36 H 1.09002 * 109.49369 * 180.71395 * 18 17 7 37 37 H 1.08998 * 109.46973 * 179.89135 * 21 19 5 38 38 H 1.08997 * 109.46894 * 299.88841 * 21 19 5 39 39 H 1.08999 * 109.47172 * 59.89524 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0597 2.8275 0.0013 6 6 3.7096 3.5093 1.2551 7 6 4.1661 4.9684 1.1840 8 1 3.6496 5.4716 0.3666 9 6 3.8443 5.6602 2.4836 10 1 3.3608 5.1147 3.2806 11 6 4.1671 6.9897 2.6552 12 7 4.7562 7.6538 1.6849 13 14 3.7689 7.8471 4.2663 14 1 4.4723 7.1606 5.3795 15 1 4.2136 9.2623 4.1970 16 1 2.3036 7.8003 4.5029 17 7 5.6161 5.0144 0.9500 18 6 5.9662 4.3327 -0.3039 19 6 5.5097 2.8735 -0.2327 20 1 6.0262 2.3703 0.5847 21 6 5.8363 2.1716 -1.5524 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6766 1.9564 -0.8899 29 1 3.9337 0.9286 -0.8892 30 1 3.9330 0.9288 0.8908 31 1 4.2056 3.0133 2.0895 32 1 2.6298 3.4727 1.3998 33 1 4.9830 8.5893 1.8055 34 1 6.1209 4.6196 1.7294 35 1 5.4702 4.8287 -1.1382 36 1 7.0460 4.3692 -0.4485 37 1 6.9117 2.2076 -1.7267 38 1 5.5111 1.1325 -1.5014 39 1 5.3189 2.6746 -2.3693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219506460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:46 Heat of formation + Delta-G solvation = -7.831066 kcal Electronic energy + Delta-G solvation = -16496.933707 eV Core-core repulsion = 14052.743582 eV Total energy + Delta-G solvation = -2444.190125 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.80480 -35.48064 -33.63153 -32.17880 -31.26335 -28.49470 -27.13378 -24.49715 -23.95286 -22.15696 -20.59030 -20.48194 -19.23792 -16.53106 -15.56150 -15.07332 -14.44117 -14.37777 -14.27508 -13.72977 -13.57826 -12.97942 -12.82098 -12.45260 -12.05904 -11.95499 -11.64480 -11.58028 -11.08441 -11.01950 -10.86526 -10.72171 -10.65595 -10.55876 -10.39707 -10.29953 -9.83678 -9.60511 -8.90124 -8.36820 -7.74962 -6.72902 -5.83658 -3.98673 3.37138 3.42216 3.44116 4.34310 4.53866 5.02861 5.10288 5.21990 5.30767 5.35632 5.51371 5.53535 5.70226 5.76040 5.81361 5.90163 5.94603 5.97484 6.01053 6.11822 6.18097 6.25972 6.29130 6.38700 6.42045 6.46460 6.53359 6.55887 6.90422 6.90611 7.45660 7.73883 7.81418 7.96755 8.28237 8.64934 8.98762 9.16883 9.69897 11.20691 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024941 B = 0.007629 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.382614 B = 3669.469358 C = 4611.025616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.116 4.116 4 C 0.050 3.950 5 N -0.531 5.531 6 C 0.029 3.971 7 C 0.227 3.773 8 H 0.046 0.954 9 C -0.541 4.541 10 H 0.052 0.948 11 C 0.085 3.915 12 N -0.846 5.846 13 Si 0.883 3.117 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.278 1.278 17 N -0.649 5.649 18 C 0.066 3.934 19 C 0.043 3.957 20 H 0.026 0.974 21 C -0.141 4.141 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.020 0.980 31 H 0.015 0.985 32 H 0.068 0.932 33 H 0.256 0.744 34 H 0.317 0.683 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 -12.498 -4.402 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.078 4.078 5 N -0.256 5.256 6 C -0.100 4.100 7 C 0.119 3.881 8 H 0.063 0.937 9 C -0.580 4.580 10 H 0.070 0.930 11 C -0.122 4.122 12 N -0.480 5.480 13 Si 0.711 3.289 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.204 1.204 17 N -0.275 5.275 18 C -0.065 4.065 19 C -0.068 4.068 20 H 0.044 0.956 21 C -0.199 4.199 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.133 0.867 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.117 -11.389 -5.143 12.674 hybrid contribution 0.104 -0.996 1.866 2.118 sum -2.013 -12.385 -3.277 12.968 Atomic orbital electron populations 1.21756 0.95977 1.01089 1.01996 1.21489 0.95773 0.97288 1.01451 1.21612 0.95036 0.95825 1.02950 1.22180 0.95297 0.90557 0.99733 1.62220 1.12797 1.13893 1.36721 1.23123 1.00511 0.99148 0.87186 1.19148 0.84470 0.86942 0.97506 0.93654 1.20884 1.41703 0.95458 0.99972 0.92992 1.24939 0.94229 0.97267 0.95812 1.70108 1.38008 1.08749 1.31142 0.86845 0.78641 0.78692 0.84742 1.20438 1.21349 1.20408 1.61068 1.09396 1.55496 1.01587 1.22119 0.98498 0.89066 0.96847 1.22510 0.88407 0.99818 0.96034 0.95582 1.21854 1.00635 0.99560 0.97900 0.93170 0.92699 0.92717 0.92377 0.92492 0.91710 0.91309 0.91192 0.96137 0.96637 0.91399 0.93396 0.86685 0.91340 0.92572 0.92746 0.93370 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.40 5.93 -26.73 -0.16 -1.56 16 3 C -0.12 -1.65 5.15 -26.73 -0.14 -1.79 16 4 C 0.05 0.78 4.72 -3.82 -0.02 0.77 16 5 N -0.53 -9.93 4.53 -226.48 -1.03 -10.95 16 6 C 0.03 0.63 4.63 -3.77 -0.02 0.61 16 7 C 0.23 5.76 2.45 -68.81 -0.17 5.59 16 8 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 9 C -0.54 -14.92 8.69 -34.44 -0.30 -15.22 16 10 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 11 C 0.08 2.36 5.39 -17.82 -0.10 2.27 16 12 N -0.85 -24.74 12.77 55.43 0.71 -24.03 16 13 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 N -0.65 -15.59 5.87 -107.81 -0.63 -16.22 16 18 C 0.07 1.32 6.00 -3.76 -0.02 1.30 16 19 C 0.04 0.76 2.56 -67.65 -0.17 0.59 16 20 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 21 C -0.14 -2.02 8.89 37.16 0.33 -1.69 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.01 6.49 -51.93 -0.34 0.67 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.99 5.74 -51.93 -0.30 0.70 16 30 H 0.02 0.33 8.12 -51.93 -0.42 -0.10 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 1.45 6.33 -51.93 -0.33 1.12 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.32 7.52 8.79 -39.29 -0.35 7.17 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.63 6.16 -51.93 -0.32 0.31 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 301.87 15.07 4.55 4.55 Total: -1.00 -28.53 301.87 -8.90 -37.43 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.09 Total: 3.28 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.39 Total: -10.33 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.95 Total: -51.21 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.53 -8.90 -37.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219506460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.598 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds