Wall clock time and date at job start Mon Mar 30 2020 03:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 C 1.52998 * 109.47061 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47308 * 180.02562 * 4 3 2 6 6 C 1.46956 * 110.99901 * 66.04754 * 5 4 3 7 7 C 1.53047 * 109.36680 * 183.18988 * 6 5 4 8 8 H 1.09001 * 109.48917 * 61.56914 * 7 6 5 9 9 C 1.50703 * 109.50733 * 181.62040 * 7 6 5 10 10 H 1.08000 * 120.00061 * 359.90334 * 9 7 6 11 11 C 1.37880 * 119.99751 * 179.90208 * 9 7 6 12 12 N 1.31513 * 119.99958 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 119.99899 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47002 * 59.99872 * 13 11 9 15 15 H 1.48497 * 109.47273 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46792 * 299.99915 * 13 11 9 17 17 N 1.46953 * 109.36497 * 301.59896 * 7 6 5 18 18 C 1.46956 * 110.88107 * 59.32178 * 17 7 6 19 19 C 1.46953 * 111.00345 * 189.84718 * 5 4 3 20 20 H 1.09001 * 109.49100 * 296.78280 * 19 5 4 21 21 C 1.53005 * 109.48688 * 56.84522 * 19 5 4 22 22 H 1.09004 * 109.46761 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46725 * 299.99525 * 1 2 3 24 24 H 1.08995 * 109.47096 * 59.99524 * 1 2 3 25 25 H 1.09001 * 109.46939 * 240.00984 * 2 1 3 26 26 H 1.09002 * 109.47457 * 120.00492 * 2 1 3 27 27 H 1.09001 * 109.46963 * 60.00621 * 3 2 1 28 28 H 1.08995 * 109.47554 * 300.00195 * 3 2 1 29 29 H 1.09002 * 109.47416 * 60.00757 * 4 3 2 30 30 H 1.08997 * 109.47782 * 300.00187 * 4 3 2 31 31 H 1.09007 * 109.48628 * 63.22067 * 6 5 4 32 32 H 1.09006 * 109.49098 * 303.16144 * 6 5 4 33 33 H 0.97006 * 119.99614 * 179.97438 * 12 11 9 34 34 H 1.00901 * 111.00173 * 295.45277 * 17 7 6 35 35 H 1.09002 * 109.48908 * 60.64267 * 18 17 7 36 36 H 1.09002 * 109.49369 * 180.71395 * 18 17 7 37 37 H 1.08998 * 109.46973 * 179.89135 * 21 19 5 38 38 H 1.08997 * 109.46894 * 299.88841 * 21 19 5 39 39 H 1.08999 * 109.47172 * 59.89524 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0597 2.8275 0.0013 6 6 3.7096 3.5093 1.2551 7 6 4.1661 4.9684 1.1840 8 1 3.6496 5.4716 0.3666 9 6 3.8443 5.6602 2.4836 10 1 3.3608 5.1147 3.2806 11 6 4.1671 6.9897 2.6552 12 7 4.7562 7.6538 1.6849 13 14 3.7689 7.8471 4.2663 14 1 4.4723 7.1606 5.3795 15 1 4.2136 9.2623 4.1970 16 1 2.3036 7.8003 4.5029 17 7 5.6161 5.0144 0.9500 18 6 5.9662 4.3327 -0.3039 19 6 5.5097 2.8735 -0.2327 20 1 6.0262 2.3703 0.5847 21 6 5.8363 2.1716 -1.5524 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6766 1.9564 -0.8899 29 1 3.9337 0.9286 -0.8892 30 1 3.9330 0.9288 0.8908 31 1 4.2056 3.0133 2.0895 32 1 2.6298 3.4727 1.3998 33 1 4.9830 8.5893 1.8055 34 1 6.1209 4.6196 1.7294 35 1 5.4702 4.8287 -1.1382 36 1 7.0460 4.3692 -0.4485 37 1 6.9117 2.2076 -1.7267 38 1 5.5111 1.1325 -1.5014 39 1 5.3189 2.6746 -2.3693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219506460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:45 Heat of formation + Delta-G solvation = -27.106237 kcal Electronic energy + Delta-G solvation = -16497.769541 eV Core-core repulsion = 14052.743582 eV Total energy + Delta-G solvation = -2445.025959 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.37380 -36.80743 -35.29151 -33.79537 -33.00729 -29.82567 -28.75316 -26.12597 -25.65146 -23.39552 -22.30227 -21.68247 -20.85892 -18.57546 -16.99297 -16.46945 -16.22030 -15.86759 -15.79836 -15.29239 -15.08998 -14.31118 -14.17826 -13.85469 -13.64411 -13.36044 -13.11377 -12.81002 -12.72420 -12.55664 -12.47807 -12.20574 -12.00066 -11.95760 -11.78130 -11.62572 -11.54132 -11.28273 -10.90006 -10.52082 -9.26720 -8.54784 -7.97068 -6.19962 1.44751 1.45793 1.53302 2.46417 2.97914 3.23727 3.88835 3.93053 4.02343 4.10490 4.25582 4.31132 4.40520 4.45032 4.50240 4.53948 4.66706 4.76736 4.79455 4.88776 4.94559 4.98453 5.00275 5.08306 5.11614 5.17380 5.28427 5.36971 5.38422 5.48952 5.53510 5.74116 6.12285 6.25718 6.34090 6.63621 7.09649 7.11402 7.52962 9.06292 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024941 B = 0.007629 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.382614 B = 3669.469358 C = 4611.025616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.113 4.113 4 C 0.052 3.948 5 N -0.542 5.542 6 C 0.047 3.953 7 C 0.232 3.768 8 H 0.001 0.999 9 C -0.559 4.559 10 H 0.050 0.950 11 C 0.036 3.964 12 N -0.879 5.879 13 Si 0.950 3.050 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.273 1.273 17 N -0.669 5.669 18 C 0.068 3.932 19 C 0.046 3.954 20 H 0.025 0.975 21 C -0.132 4.132 22 H 0.067 0.933 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.021 0.979 31 H 0.009 0.991 32 H 0.062 0.938 33 H 0.256 0.744 34 H 0.316 0.684 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.836 -14.261 -4.462 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.151 4.151 4 C -0.075 4.075 5 N -0.267 5.267 6 C -0.082 4.082 7 C 0.123 3.877 8 H 0.019 0.981 9 C -0.598 4.598 10 H 0.068 0.932 11 C -0.168 4.168 12 N -0.515 5.515 13 Si 0.776 3.224 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.198 1.198 17 N -0.296 5.296 18 C -0.063 4.063 19 C -0.064 4.064 20 H 0.043 0.957 21 C -0.190 4.190 22 H 0.086 0.914 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.039 0.961 31 H 0.027 0.973 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.992 -13.176 -5.209 14.308 hybrid contribution 0.069 -0.462 1.830 1.889 sum -1.923 -13.638 -3.379 14.182 Atomic orbital electron populations 1.21756 0.95228 1.02151 1.01672 1.21445 0.96411 0.95160 1.02339 1.21583 0.94243 0.97681 1.01580 1.22279 0.95994 0.88516 1.00697 1.62194 1.13740 1.15989 1.34792 1.22712 0.99909 0.97127 0.88483 1.18854 0.85185 0.88728 0.94909 0.98126 1.21246 1.41642 0.96142 1.00759 0.93182 1.25690 0.94033 0.97937 0.99105 1.70249 1.39207 1.08897 1.33136 0.85772 0.78552 0.77464 0.80618 1.19741 1.21040 1.19835 1.60829 1.08544 1.57299 1.02978 1.22116 0.99555 0.90423 0.94194 1.22449 0.87644 0.98213 0.98103 0.95670 1.21783 1.02014 0.99931 0.95257 0.91404 0.93454 0.92692 0.90882 0.92129 0.93720 0.92067 0.88988 0.96107 0.97292 0.91922 0.93530 0.86706 0.93246 0.90527 0.90742 0.91525 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.91 71.98 0.71 -2.12 16 2 C -0.12 -2.38 5.93 30.59 0.18 -2.20 16 3 C -0.11 -3.08 5.15 30.59 0.16 -2.93 16 4 C 0.05 1.53 4.72 86.30 0.41 1.94 16 5 N -0.54 -19.94 4.53 -870.46 -3.94 -23.88 16 6 C 0.05 2.07 4.63 86.31 0.40 2.47 16 7 C 0.23 12.13 2.45 44.18 0.11 12.24 16 8 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 9 C -0.56 -31.54 8.69 25.60 0.22 -31.31 16 10 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 11 C 0.04 2.06 5.39 84.66 0.46 2.51 16 12 N -0.88 -52.61 12.77 21.45 0.27 -52.33 16 13 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 N -0.67 -32.84 5.87 -495.00 -2.91 -35.75 16 18 C 0.07 2.71 6.00 86.31 0.52 3.22 16 19 C 0.05 1.57 2.56 44.93 0.11 1.69 16 20 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 21 C -0.13 -3.38 8.89 71.98 0.64 -2.74 16 22 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 1.39 6.49 -2.39 -0.02 1.37 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.09 2.31 5.74 -2.39 -0.01 2.29 16 30 H 0.02 0.62 8.12 -2.39 -0.02 0.60 16 31 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.06 2.76 6.33 -2.38 -0.02 2.74 16 33 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 34 H 0.32 15.27 8.79 -89.69 -0.79 14.48 16 35 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.48 6.16 -2.39 -0.01 1.47 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -62.17 301.87 -0.42 -62.59 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.21 Total: 20.38 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 3.92 Total: -17.23 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -6.57 Total: -111.95 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -62.17 -0.42 -62.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219506460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.484 kcal (2) G-P(sol) polarization free energy of solvation -62.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds