Wall clock time and date at job start Mon Mar 30 2020 03:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47221 * 2 1 4 4 C 1.53001 * 109.47030 * 119.99439 * 2 1 3 5 5 N 1.46899 * 109.46934 * 65.42247 * 4 2 1 6 6 C 1.46961 * 110.99921 * 199.52796 * 5 4 2 7 7 C 1.53052 * 109.36333 * 176.81423 * 6 5 4 8 8 N 1.46959 * 109.36724 * 58.39447 * 7 6 5 9 9 C 1.46899 * 111.00020 * 176.81248 * 8 7 6 10 10 C 1.46948 * 110.88255 * 300.68171 * 8 7 6 11 11 H 1.08998 * 109.49182 * 299.35122 * 10 8 7 12 12 C 1.50695 * 109.48941 * 179.28305 * 10 8 7 13 13 H 1.08000 * 120.00184 * 334.96218 * 12 10 8 14 14 C 1.37879 * 120.00023 * 154.95356 * 12 10 8 15 15 N 1.31511 * 120.00193 * 185.58267 * 14 12 10 16 16 Si 1.86801 * 119.99995 * 5.57821 * 14 12 10 17 17 H 1.48503 * 109.46822 * 94.38510 * 16 14 12 18 18 H 1.48493 * 109.47323 * 214.38548 * 16 14 12 19 19 H 1.48501 * 109.47079 * 334.38805 * 16 14 12 20 20 C 1.46949 * 111.00302 * 75.72548 * 5 4 2 21 21 H 1.09004 * 109.46306 * 64.77772 * 1 2 3 22 22 H 1.08991 * 109.47052 * 184.77568 * 1 2 3 23 23 H 1.08999 * 109.46783 * 304.78196 * 1 2 3 24 24 H 1.08993 * 109.47226 * 239.99493 * 2 1 3 25 25 H 1.09003 * 109.47287 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.47118 * 299.99562 * 3 2 1 27 27 H 1.09003 * 109.47487 * 59.99552 * 3 2 1 28 28 H 1.09000 * 109.47275 * 305.42421 * 4 2 1 29 29 H 1.08992 * 109.47611 * 185.42088 * 4 2 1 30 30 H 1.08999 * 109.48737 * 296.77277 * 6 5 4 31 31 H 1.08991 * 109.49430 * 56.84424 * 6 5 4 32 32 H 1.09006 * 109.48698 * 298.43197 * 7 6 5 33 33 H 1.09002 * 109.49249 * 178.36825 * 7 6 5 34 34 H 1.08997 * 109.47283 * 179.49738 * 9 8 7 35 35 H 1.08995 * 109.47164 * 59.48930 * 9 8 7 36 36 H 1.09005 * 109.47148 * 299.49159 * 9 8 7 37 37 H 0.97001 * 120.00020 * 180.02562 * 15 14 12 38 38 H 1.09008 * 109.49116 * 63.21620 * 20 5 4 39 39 H 1.09005 * 109.49230 * 303.16031 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6601 -2.1387 1.1858 6 6 1.7061 -2.7565 2.5184 7 6 1.2285 -4.2074 2.4219 8 7 2.0817 -4.9394 1.4754 9 6 1.7018 -6.3570 1.4118 10 6 2.0357 -4.3216 0.1428 11 1 1.0128 -4.3434 -0.2330 12 6 2.9334 -5.0850 -0.7965 13 1 3.7648 -5.6533 -0.4064 14 6 2.6932 -5.0579 -2.1539 15 7 3.4070 -5.8098 -2.9631 16 14 1.3539 -3.9535 -2.8437 17 1 1.9485 -2.6607 -3.2687 18 1 0.7200 -4.6147 -4.0124 19 1 0.3286 -3.7067 -1.7982 20 6 2.5133 -2.8707 0.2394 21 1 -0.3632 0.4380 -0.9298 22 1 -0.3633 -1.0240 0.0856 23 1 -0.3633 0.5862 0.8441 24 1 1.8934 -0.5139 -0.8899 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.5995 -0.2664 2.1366 29 1 3.1256 -0.6379 1.2993 30 1 2.7290 -2.7348 2.8942 31 1 1.0568 -2.2044 3.1978 32 1 0.1963 -4.2280 2.0719 33 1 1.2891 -4.6764 3.4040 34 1 2.3431 -6.8734 0.6976 35 1 0.6626 -6.4407 1.0939 36 1 1.8178 -6.8088 2.3970 37 1 3.2383 -5.7905 -3.9181 38 1 3.5455 -2.8502 0.5893 39 1 2.4527 -2.4018 -0.7428 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219508541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:08 Heat of formation + Delta-G solvation = 2.208488 kcal Electronic energy + Delta-G solvation = -16993.759007 eV Core-core repulsion = 14550.004230 eV Total energy + Delta-G solvation = -2443.754777 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.79166 -36.22136 -33.49275 -32.67824 -30.30145 -28.09502 -26.90975 -25.26979 -24.56913 -22.64886 -21.29111 -19.58220 -18.80299 -16.94484 -15.71505 -14.98948 -14.55545 -14.34097 -13.99995 -13.80305 -13.73062 -13.17487 -12.79069 -12.41938 -12.31079 -12.04985 -11.74730 -11.59588 -11.28498 -11.06396 -10.90544 -10.72573 -10.64989 -10.49208 -10.38139 -9.95062 -9.87780 -9.65650 -9.17481 -8.55958 -7.75434 -7.25151 -6.10844 -4.10486 3.27140 3.36589 3.43263 4.38023 4.42345 4.88940 5.04741 5.17954 5.26257 5.39245 5.54995 5.65840 5.77265 5.81057 5.86049 5.87924 5.94763 6.04771 6.14038 6.19051 6.21094 6.28040 6.32487 6.41418 6.47663 6.53819 6.59771 6.65502 6.75823 7.00999 7.22158 7.44370 7.64866 7.75628 7.99815 8.14818 8.66271 8.99178 9.52573 11.01254 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020976 B = 0.012042 C = 0.008634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.560132 B = 2324.616413 C = 3242.263658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.061 3.939 5 N -0.546 5.546 6 C 0.064 3.936 7 C 0.055 3.945 8 N -0.536 5.536 9 C 0.041 3.959 10 C 0.184 3.816 11 H 0.018 0.982 12 C -0.506 4.506 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.895 5.895 16 Si 0.862 3.138 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.254 1.254 20 C 0.066 3.934 21 H 0.043 0.957 22 H 0.068 0.932 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.010 0.990 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.036 0.964 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.128 9.639 8.112 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.067 4.067 5 N -0.271 5.271 6 C -0.064 4.064 7 C -0.074 4.074 8 N -0.261 5.261 9 C -0.108 4.108 10 C 0.076 3.924 11 H 0.035 0.965 12 C -0.544 4.544 13 H 0.099 0.901 14 C -0.128 4.128 15 N -0.533 5.533 16 Si 0.690 3.310 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.178 1.178 20 C -0.062 4.062 21 H 0.062 0.938 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.028 0.972 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.098 9.579 7.919 13.434 hybrid contribution -0.608 0.624 -0.569 1.041 sum -5.706 10.203 7.350 13.809 Atomic orbital electron populations 1.21706 0.94940 1.02648 1.00114 1.21118 0.96578 0.95053 0.98778 1.21810 1.00772 0.96265 1.01340 1.22099 0.97681 0.89301 0.97644 1.62270 1.54869 1.01438 1.08524 1.22039 0.99349 0.94649 0.90382 1.22090 0.95128 0.93376 0.96774 1.62118 1.51323 1.02206 1.10487 1.22156 0.98478 0.89690 1.00430 1.19861 0.96375 0.89937 0.86186 0.96477 1.20906 1.13781 1.29715 0.90034 0.90059 1.24953 0.95876 0.94942 0.96999 1.69900 1.40857 1.38625 1.03904 0.87084 0.83541 0.81292 0.79110 1.20171 1.21540 1.17801 1.22641 0.94108 0.95252 0.94194 0.93814 0.91279 0.93564 0.91093 0.92932 0.92820 0.92986 0.91785 0.95059 0.94684 0.91645 0.95274 0.91711 0.89622 0.97186 0.93773 0.92593 0.94610 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.14 37.16 0.34 -1.61 16 2 C -0.10 -1.44 2.98 -90.62 -0.27 -1.71 16 3 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 4 C 0.06 0.95 4.39 -3.82 -0.02 0.93 16 5 N -0.55 -10.10 4.03 -234.47 -0.95 -11.05 16 6 C 0.06 1.08 5.57 -3.76 -0.02 1.06 16 7 C 0.06 1.00 5.62 -3.76 -0.02 0.97 16 8 N -0.54 -11.61 4.77 -236.13 -1.13 -12.74 16 9 C 0.04 0.83 9.36 60.06 0.56 1.39 16 10 C 0.18 4.44 1.52 -68.81 -0.10 4.34 16 11 H 0.02 0.45 5.64 -51.93 -0.29 0.16 16 12 C -0.51 -14.06 7.59 -34.44 -0.26 -14.32 16 13 H 0.08 2.49 7.80 -52.49 -0.41 2.08 16 14 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 15 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 16 Si 0.86 21.44 26.00 -169.99 -4.42 17.02 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 19 H -0.25 -6.19 5.91 56.52 0.33 -5.86 16 20 C 0.07 1.44 4.50 -3.77 -0.02 1.43 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 1.14 7.64 -51.93 -0.40 0.74 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.23 6.72 -51.93 -0.35 0.88 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.88 7.85 -51.93 -0.41 0.47 16 29 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.93 6.68 -51.93 -0.35 1.59 16 35 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.06 1.46 4.87 -51.93 -0.25 1.21 16 LS Contribution 295.27 15.07 4.45 4.45 Total: -1.00 -29.31 295.27 -7.97 -37.29 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.14 Total: -1.88 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 0.43 Total: -6.88 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -1.30 Total: -50.00 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.42 Total: 17.02 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.31 -7.97 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219508541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.495 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds