Wall clock time and date at job start Mon Mar 30 2020 03:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47221 * 2 1 4 4 C 1.53001 * 109.47030 * 119.99439 * 2 1 3 5 5 N 1.46899 * 109.46934 * 65.42247 * 4 2 1 6 6 C 1.46961 * 110.99921 * 199.52796 * 5 4 2 7 7 C 1.53052 * 109.36333 * 176.81423 * 6 5 4 8 8 N 1.46959 * 109.36724 * 58.39447 * 7 6 5 9 9 C 1.46899 * 111.00020 * 176.81248 * 8 7 6 10 10 C 1.46948 * 110.88255 * 300.68171 * 8 7 6 11 11 H 1.08998 * 109.49182 * 299.35122 * 10 8 7 12 12 C 1.50695 * 109.48941 * 179.28305 * 10 8 7 13 13 H 1.08000 * 120.00184 * 334.96218 * 12 10 8 14 14 C 1.37879 * 120.00023 * 154.95356 * 12 10 8 15 15 N 1.31511 * 120.00193 * 185.58267 * 14 12 10 16 16 Si 1.86801 * 119.99995 * 5.57821 * 14 12 10 17 17 H 1.48503 * 109.46822 * 94.38510 * 16 14 12 18 18 H 1.48493 * 109.47323 * 214.38548 * 16 14 12 19 19 H 1.48501 * 109.47079 * 334.38805 * 16 14 12 20 20 C 1.46949 * 111.00302 * 75.72548 * 5 4 2 21 21 H 1.09004 * 109.46306 * 64.77772 * 1 2 3 22 22 H 1.08991 * 109.47052 * 184.77568 * 1 2 3 23 23 H 1.08999 * 109.46783 * 304.78196 * 1 2 3 24 24 H 1.08993 * 109.47226 * 239.99493 * 2 1 3 25 25 H 1.09003 * 109.47287 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.47118 * 299.99562 * 3 2 1 27 27 H 1.09003 * 109.47487 * 59.99552 * 3 2 1 28 28 H 1.09000 * 109.47275 * 305.42421 * 4 2 1 29 29 H 1.08992 * 109.47611 * 185.42088 * 4 2 1 30 30 H 1.08999 * 109.48737 * 296.77277 * 6 5 4 31 31 H 1.08991 * 109.49430 * 56.84424 * 6 5 4 32 32 H 1.09006 * 109.48698 * 298.43197 * 7 6 5 33 33 H 1.09002 * 109.49249 * 178.36825 * 7 6 5 34 34 H 1.08997 * 109.47283 * 179.49738 * 9 8 7 35 35 H 1.08995 * 109.47164 * 59.48930 * 9 8 7 36 36 H 1.09005 * 109.47148 * 299.49159 * 9 8 7 37 37 H 0.97001 * 120.00020 * 180.02562 * 15 14 12 38 38 H 1.09008 * 109.49116 * 63.21620 * 20 5 4 39 39 H 1.09005 * 109.49230 * 303.16031 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6601 -2.1387 1.1858 6 6 1.7061 -2.7565 2.5184 7 6 1.2285 -4.2074 2.4219 8 7 2.0817 -4.9394 1.4754 9 6 1.7018 -6.3570 1.4118 10 6 2.0357 -4.3216 0.1428 11 1 1.0128 -4.3434 -0.2330 12 6 2.9334 -5.0850 -0.7965 13 1 3.7648 -5.6533 -0.4064 14 6 2.6932 -5.0579 -2.1539 15 7 3.4070 -5.8098 -2.9631 16 14 1.3539 -3.9535 -2.8437 17 1 1.9485 -2.6607 -3.2687 18 1 0.7200 -4.6147 -4.0124 19 1 0.3286 -3.7067 -1.7982 20 6 2.5133 -2.8707 0.2394 21 1 -0.3632 0.4380 -0.9298 22 1 -0.3633 -1.0240 0.0856 23 1 -0.3633 0.5862 0.8441 24 1 1.8934 -0.5139 -0.8899 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.5995 -0.2664 2.1366 29 1 3.1256 -0.6379 1.2993 30 1 2.7290 -2.7348 2.8942 31 1 1.0568 -2.2044 3.1978 32 1 0.1963 -4.2280 2.0719 33 1 1.2891 -4.6764 3.4040 34 1 2.3431 -6.8734 0.6976 35 1 0.6626 -6.4407 1.0939 36 1 1.8178 -6.8088 2.3970 37 1 3.2383 -5.7905 -3.9181 38 1 3.5455 -2.8502 0.5893 39 1 2.4527 -2.4018 -0.7428 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219508541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:08 Heat of formation + Delta-G solvation = -18.703054 kcal Electronic energy + Delta-G solvation = -16994.665800 eV Core-core repulsion = 14550.004230 eV Total energy + Delta-G solvation = -2444.661570 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34037 -37.60816 -35.03394 -34.60302 -32.11995 -29.58025 -27.92959 -27.19317 -25.98904 -24.24463 -22.96496 -20.78226 -20.47759 -19.08107 -17.30895 -16.38106 -16.19576 -15.84615 -15.72187 -15.35648 -15.06987 -14.78830 -14.58429 -14.08762 -13.53121 -13.26707 -13.10289 -13.04341 -12.90035 -12.67497 -12.55906 -12.26313 -12.01183 -11.81148 -11.77380 -11.76118 -11.59010 -11.25444 -11.13899 -10.71386 -9.23091 -8.97236 -8.33554 -6.36749 1.27442 1.30946 1.42848 2.28599 2.89979 3.11692 3.31639 3.89159 4.09419 4.12605 4.27491 4.34763 4.42941 4.48972 4.58691 4.62694 4.71316 4.74016 4.78920 4.83702 4.86125 4.88688 4.95882 5.05182 5.12037 5.15031 5.22950 5.28483 5.35409 5.44511 5.50657 5.57030 6.01554 6.15138 6.20476 6.43634 6.68042 6.74523 7.29910 8.82470 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020976 B = 0.012042 C = 0.008634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.560132 B = 2324.616413 C = 3242.263658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 C -0.138 4.138 4 C 0.062 3.938 5 N -0.551 5.551 6 C 0.063 3.937 7 C 0.054 3.946 8 N -0.553 5.553 9 C 0.045 3.955 10 C 0.191 3.809 11 H 0.002 0.998 12 C -0.504 4.504 13 H 0.039 0.961 14 C 0.023 3.977 15 N -0.941 5.941 16 Si 0.925 3.075 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.246 1.246 20 C 0.080 3.920 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.027 0.973 30 H 0.032 0.968 31 H 0.104 0.896 32 H 0.026 0.974 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.011 0.989 36 H 0.079 0.921 37 H 0.267 0.733 38 H 0.018 0.982 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 11.915 9.951 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 C -0.195 4.195 4 C -0.066 4.066 5 N -0.276 5.276 6 C -0.064 4.064 7 C -0.074 4.074 8 N -0.278 5.278 9 C -0.103 4.103 10 C 0.083 3.917 11 H 0.019 0.981 12 C -0.543 4.543 13 H 0.057 0.943 14 C -0.175 4.175 15 N -0.580 5.580 16 Si 0.749 3.251 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.170 1.170 20 C -0.049 4.049 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.122 0.878 32 H 0.045 0.955 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.809 11.867 9.787 16.822 hybrid contribution -0.033 -0.138 -1.038 1.048 sum -6.842 11.729 8.749 16.154 Atomic orbital electron populations 1.21660 0.94251 1.01540 1.01513 1.21153 0.97175 0.96500 0.97081 1.21752 1.00735 0.94332 1.02712 1.22209 0.97748 0.87442 0.99206 1.62233 1.53665 1.02791 1.08887 1.22174 1.00089 0.94236 0.89940 1.22255 0.94146 0.94086 0.96949 1.62073 1.53098 1.02976 1.09616 1.22100 0.97582 0.89155 1.01476 1.19620 0.94224 0.90964 0.86902 0.98079 1.21051 1.12978 1.29254 0.90998 0.94295 1.25689 0.98228 0.96278 0.97333 1.70030 1.43035 1.40639 1.04335 0.86093 0.80916 0.79608 0.78446 1.19203 1.21150 1.17012 1.22218 0.93589 0.94280 0.94796 0.93186 0.93721 0.91284 0.94326 0.93006 0.92112 0.90958 0.88826 0.95475 0.94936 0.87837 0.95546 0.88628 0.93146 0.96996 0.90258 0.92401 0.96418 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.14 71.98 0.66 -2.74 16 2 C -0.10 -2.76 2.98 -10.79 -0.03 -2.79 16 3 C -0.14 -2.88 9.19 71.98 0.66 -2.22 16 4 C 0.06 1.74 4.39 86.30 0.38 2.11 16 5 N -0.55 -19.24 4.03 -895.73 -3.61 -22.85 16 6 C 0.06 1.92 5.57 86.31 0.48 2.40 16 7 C 0.05 1.79 5.62 86.31 0.49 2.27 16 8 N -0.55 -23.58 4.77 -900.98 -4.30 -27.88 16 9 C 0.05 1.82 9.36 127.69 1.19 3.01 16 10 C 0.19 9.31 1.52 44.18 0.07 9.38 16 11 H 0.00 0.08 5.64 -2.39 -0.01 0.07 16 12 C -0.50 -29.18 7.59 25.60 0.19 -28.99 16 13 H 0.04 2.53 7.80 -2.91 -0.02 2.51 16 14 C 0.02 1.37 5.47 84.66 0.46 1.83 16 15 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 16 Si 0.92 45.26 26.00 68.60 1.78 47.05 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 19 H -0.25 -11.66 5.91 99.48 0.59 -11.07 16 20 C 0.08 3.50 4.50 86.31 0.39 3.89 16 21 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 22 H 0.04 1.36 7.64 -2.39 -0.02 1.34 16 23 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 1.31 6.72 -2.39 -0.02 1.29 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 2.12 7.85 -2.39 -0.02 2.10 16 29 H 0.03 0.80 8.00 -2.39 -0.02 0.78 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 2.41 8.00 -2.39 -0.02 2.39 16 32 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.05 2.36 6.68 -2.39 -0.02 2.34 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 37 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 38 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.05 2.32 4.87 -2.38 -0.01 2.31 16 Total: -1.00 -65.66 295.27 -0.03 -65.69 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.86 Total: 8.36 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 4.94 Total: -11.84 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -7.62 Total: -109.25 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.78 Total: 47.05 kcal Total: -65.66 -0.03 -65.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219508541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.988 kcal (2) G-P(sol) polarization free energy of solvation -65.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds