Wall clock time and date at job start Mon Mar 30 2020 03:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46962 * 110.99749 * 2 1 4 4 C 1.53051 * 109.36335 * 176.81346 * 3 2 1 5 5 N 1.46958 * 109.36664 * 58.40417 * 4 3 2 6 6 C 1.46896 * 111.00167 * 176.81390 * 5 4 3 7 7 C 1.52998 * 109.47013 * 183.80177 * 6 5 4 8 8 C 1.53001 * 109.46824 * 303.79821 * 6 5 4 9 9 C 1.52995 * 109.47241 * 63.79451 * 6 5 4 10 10 C 1.46958 * 110.87782 * 300.68137 * 5 4 3 11 11 C 1.46958 * 110.99998 * 236.18404 * 2 1 3 12 12 H 1.09003 * 109.46933 * 63.20916 * 11 2 1 13 13 C 1.50701 * 109.50791 * 303.14214 * 11 2 1 14 14 H 1.08001 * 119.99744 * 326.21004 * 13 11 2 15 15 C 1.37869 * 120.00077 * 146.20366 * 13 11 2 16 16 N 1.31515 * 120.00401 * 5.90154 * 15 13 11 17 17 Si 1.86805 * 119.99812 * 185.89723 * 15 13 11 18 18 H 1.48497 * 109.47192 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46907 * 120.00544 * 17 15 13 20 20 H 1.48497 * 109.47234 * 239.99975 * 17 15 13 21 21 H 1.09000 * 109.47387 * 65.29683 * 1 2 3 22 22 H 1.09000 * 109.46686 * 185.29995 * 1 2 3 23 23 H 1.09002 * 109.47180 * 305.29721 * 1 2 3 24 24 H 1.09002 * 109.48410 * 56.84912 * 3 2 1 25 25 H 1.09000 * 109.50954 * 296.79180 * 3 2 1 26 26 H 1.08998 * 109.49098 * 298.43455 * 4 3 2 27 27 H 1.09004 * 109.49123 * 178.37493 * 4 3 2 28 28 H 1.08997 * 109.47215 * 59.99643 * 7 6 5 29 29 H 1.08996 * 109.46819 * 179.97438 * 7 6 5 30 30 H 1.08994 * 109.46886 * 299.99355 * 7 6 5 31 31 H 1.08997 * 109.47511 * 60.00230 * 8 6 5 32 32 H 1.09005 * 109.47487 * 180.02562 * 8 6 5 33 33 H 1.09007 * 109.47719 * 300.00107 * 8 6 5 34 34 H 1.08999 * 109.46856 * 60.00792 * 9 6 5 35 35 H 1.09004 * 109.47270 * 179.97438 * 9 6 5 36 36 H 1.08997 * 109.47883 * 299.99902 * 9 6 5 37 37 H 1.09002 * 109.48667 * 179.28977 * 10 5 4 38 38 H 1.09004 * 109.48955 * 299.32585 * 10 5 4 39 39 H 0.96996 * 120.00139 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 0.0803 5 7 4.0501 0.5661 -1.0599 6 6 5.5190 0.5661 -1.0599 7 6 6.0290 -0.1550 -2.3092 8 6 6.0289 2.0086 -1.0598 9 6 6.0290 -0.1551 0.1893 10 6 3.5234 -0.8059 -1.0599 11 6 1.9956 -0.7635 -1.1399 12 1 1.6934 -0.2825 -2.0701 13 6 1.4509 -2.1681 -1.0995 14 1 1.2673 -2.6489 -0.1500 15 6 1.1869 -2.8391 -2.2746 16 7 1.5177 -2.3007 -3.4280 17 14 0.3594 -4.5132 -2.2284 18 1 0.0911 -4.8941 -0.8184 19 1 -0.9219 -4.4528 -2.9768 20 1 1.2505 -5.5233 -2.8535 21 1 -0.3634 0.4295 -0.9336 22 1 -0.3633 -1.0233 0.0949 23 1 -0.3634 0.5938 0.8388 24 1 1.6012 1.9128 0.8603 25 1 1.6936 1.8778 -0.9171 26 1 3.8253 0.8480 1.0105 27 1 3.9177 2.3450 0.0513 28 1 5.6656 0.3588 -3.1991 29 1 7.1189 -0.1546 -2.3094 30 1 5.6657 -1.1827 -2.3092 31 1 5.6657 2.5224 -0.1698 32 1 7.1190 2.0087 -1.0603 33 1 5.6656 2.5226 -1.9498 34 1 5.6658 -1.1828 0.1892 35 1 7.1191 -0.1555 0.1891 36 1 5.6658 0.3586 1.0794 37 1 3.9178 -1.3467 -1.9202 38 1 3.8257 -1.3115 -0.1428 39 1 1.3322 -2.7730 -4.2546 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219508835.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:11 Heat of formation + Delta-G solvation = 9.127666 kcal Electronic energy + Delta-G solvation = -17203.004819 eV Core-core repulsion = 14759.550079 eV Total energy + Delta-G solvation = -2443.454739 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.11713 -36.19701 -32.79061 -31.64294 -29.97515 -27.13106 -26.94707 -26.63264 -24.73563 -22.56149 -21.76832 -19.22096 -17.94897 -16.40401 -15.60865 -14.72238 -14.26881 -14.04869 -13.92240 -13.69186 -13.29496 -13.08021 -12.93748 -12.09927 -11.84088 -11.67615 -11.55190 -11.33058 -11.25698 -11.02152 -10.88251 -10.66443 -10.59091 -10.49535 -10.27580 -10.10842 -9.69062 -9.45183 -8.98119 -8.45811 -7.46058 -7.04710 -6.03835 -4.08505 3.28144 3.36838 3.41628 4.39209 4.58812 5.08833 5.21338 5.31820 5.40548 5.57097 5.74167 5.85306 5.91091 5.92214 6.02272 6.11753 6.14371 6.23616 6.26271 6.30717 6.35244 6.45482 6.50621 6.59394 6.63078 6.75701 6.84220 6.90391 6.97068 7.33538 7.64733 7.83014 7.86835 8.00229 8.15691 8.31850 8.68726 9.08142 9.57886 11.03658 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028365 B = 0.009674 C = 0.007980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.908430 B = 2893.652998 C = 3507.725129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.059 3.941 5 N -0.531 5.531 6 C 0.100 3.900 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.178 4.178 10 C 0.075 3.925 11 C 0.210 3.790 12 H 0.034 0.966 13 C -0.506 4.506 14 H 0.061 0.939 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.011 0.989 22 H 0.074 0.926 23 H 0.037 0.963 24 H 0.058 0.942 25 H 0.027 0.973 26 H 0.033 0.967 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.023 0.977 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.051 6.206 4.501 9.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.273 5.273 3 C -0.072 4.072 4 C -0.069 4.069 5 N -0.256 5.256 6 C 0.010 3.990 7 C -0.194 4.194 8 C -0.195 4.195 9 C -0.237 4.237 10 C -0.052 4.052 11 C 0.103 3.897 12 H 0.052 0.948 13 C -0.545 4.545 14 H 0.079 0.921 15 C -0.139 4.139 16 N -0.524 5.524 17 Si 0.719 3.281 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.030 0.970 22 H 0.093 0.907 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.041 0.959 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.048 6.172 4.287 9.646 hybrid contribution -0.437 -0.930 -0.080 1.030 sum 5.611 5.242 4.207 8.756 Atomic orbital electron populations 1.22025 0.88663 1.01938 0.97490 1.62336 1.07080 1.10598 1.47247 1.22045 0.94251 0.91921 0.99015 1.22110 0.94833 0.97466 0.92531 1.62564 1.04792 1.16832 1.41413 1.21008 0.88779 0.94814 0.94389 1.21844 0.99085 1.01142 0.97341 1.21899 0.99714 0.95912 1.01969 1.22465 1.00527 1.01749 0.98940 1.22480 0.97551 0.85781 0.99419 1.19420 0.89423 0.93125 0.87703 0.94766 1.21038 1.42727 0.98261 0.92472 0.92090 1.25013 0.95341 0.97979 0.95530 1.69994 1.46541 1.38407 0.97425 0.86551 0.79296 0.84066 0.78197 1.19619 1.21005 1.21061 0.97047 0.90722 0.94372 0.92378 0.95437 0.94845 0.91627 0.92045 0.93286 0.91964 0.92856 0.93016 0.92122 0.91980 0.93055 0.92852 0.90531 0.95921 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.00 9.24 60.06 0.56 1.55 16 2 N -0.55 -12.36 4.78 -236.12 -1.13 -13.49 16 3 C 0.06 1.10 5.62 -3.76 -0.02 1.08 16 4 C 0.06 1.07 4.83 -3.77 -0.02 1.05 16 5 N -0.53 -10.50 4.53 -218.82 -0.99 -11.49 16 6 C 0.10 1.65 0.71 -131.61 -0.09 1.55 16 7 C -0.14 -2.23 8.25 37.16 0.31 -1.92 16 8 C -0.14 -1.90 8.12 37.16 0.30 -1.60 16 9 C -0.18 -2.75 7.78 37.15 0.29 -2.46 16 10 C 0.07 1.74 4.09 -3.77 -0.02 1.72 16 11 C 0.21 5.34 2.01 -68.81 -0.14 5.21 16 12 H 0.03 1.01 7.43 -51.93 -0.39 0.62 16 13 C -0.51 -13.81 6.98 -34.44 -0.24 -14.05 16 14 H 0.06 1.70 7.80 -52.49 -0.41 1.29 16 15 C 0.06 1.77 5.45 -17.82 -0.10 1.67 16 16 N -0.89 -25.42 12.87 55.43 0.71 -24.71 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 22 H 0.07 1.66 7.05 -51.93 -0.37 1.29 16 23 H 0.04 0.68 8.11 -51.93 -0.42 0.26 16 24 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.03 0.62 6.57 -51.93 -0.34 0.28 16 27 H 0.07 1.04 6.06 -51.93 -0.31 0.72 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.12 6.34 -51.93 -0.33 0.80 16 31 H 0.05 0.70 6.28 -51.93 -0.33 0.38 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.06 6.48 -51.93 -0.34 0.73 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.81 6.56 -51.93 -0.34 0.47 16 37 H 0.08 1.92 6.14 -51.93 -0.32 1.60 16 38 H 0.02 0.54 6.48 -51.93 -0.34 0.20 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 290.82 15.07 4.38 4.38 Total: -1.00 -28.33 290.82 -7.96 -36.29 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.74 Total: -0.93 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 0.83 Total: -6.20 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -1.40 Total: -49.69 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.33 -7.96 -36.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219508835.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.414 kcal (2) G-P(sol) polarization free energy of solvation -28.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds