Wall clock time and date at job start Mon Mar 30 2020 03:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46962 * 110.99749 * 2 1 4 4 C 1.53051 * 109.36335 * 176.81346 * 3 2 1 5 5 N 1.46958 * 109.36664 * 58.40417 * 4 3 2 6 6 C 1.46896 * 111.00167 * 176.81390 * 5 4 3 7 7 C 1.52998 * 109.47013 * 183.80177 * 6 5 4 8 8 C 1.53001 * 109.46824 * 303.79821 * 6 5 4 9 9 C 1.52995 * 109.47241 * 63.79451 * 6 5 4 10 10 C 1.46958 * 110.87782 * 300.68137 * 5 4 3 11 11 C 1.46958 * 110.99998 * 236.18404 * 2 1 3 12 12 H 1.09003 * 109.46933 * 63.20916 * 11 2 1 13 13 C 1.50701 * 109.50791 * 303.14214 * 11 2 1 14 14 H 1.08001 * 119.99744 * 326.21004 * 13 11 2 15 15 C 1.37869 * 120.00077 * 146.20366 * 13 11 2 16 16 N 1.31515 * 120.00401 * 5.90154 * 15 13 11 17 17 Si 1.86805 * 119.99812 * 185.89723 * 15 13 11 18 18 H 1.48497 * 109.47192 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46907 * 120.00544 * 17 15 13 20 20 H 1.48497 * 109.47234 * 239.99975 * 17 15 13 21 21 H 1.09000 * 109.47387 * 65.29683 * 1 2 3 22 22 H 1.09000 * 109.46686 * 185.29995 * 1 2 3 23 23 H 1.09002 * 109.47180 * 305.29721 * 1 2 3 24 24 H 1.09002 * 109.48410 * 56.84912 * 3 2 1 25 25 H 1.09000 * 109.50954 * 296.79180 * 3 2 1 26 26 H 1.08998 * 109.49098 * 298.43455 * 4 3 2 27 27 H 1.09004 * 109.49123 * 178.37493 * 4 3 2 28 28 H 1.08997 * 109.47215 * 59.99643 * 7 6 5 29 29 H 1.08996 * 109.46819 * 179.97438 * 7 6 5 30 30 H 1.08994 * 109.46886 * 299.99355 * 7 6 5 31 31 H 1.08997 * 109.47511 * 60.00230 * 8 6 5 32 32 H 1.09005 * 109.47487 * 180.02562 * 8 6 5 33 33 H 1.09007 * 109.47719 * 300.00107 * 8 6 5 34 34 H 1.08999 * 109.46856 * 60.00792 * 9 6 5 35 35 H 1.09004 * 109.47270 * 179.97438 * 9 6 5 36 36 H 1.08997 * 109.47883 * 299.99902 * 9 6 5 37 37 H 1.09002 * 109.48667 * 179.28977 * 10 5 4 38 38 H 1.09004 * 109.48955 * 299.32585 * 10 5 4 39 39 H 0.96996 * 120.00139 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 0.0803 5 7 4.0501 0.5661 -1.0599 6 6 5.5190 0.5661 -1.0599 7 6 6.0290 -0.1550 -2.3092 8 6 6.0289 2.0086 -1.0598 9 6 6.0290 -0.1551 0.1893 10 6 3.5234 -0.8059 -1.0599 11 6 1.9956 -0.7635 -1.1399 12 1 1.6934 -0.2825 -2.0701 13 6 1.4509 -2.1681 -1.0995 14 1 1.2673 -2.6489 -0.1500 15 6 1.1869 -2.8391 -2.2746 16 7 1.5177 -2.3007 -3.4280 17 14 0.3594 -4.5132 -2.2284 18 1 0.0911 -4.8941 -0.8184 19 1 -0.9219 -4.4528 -2.9768 20 1 1.2505 -5.5233 -2.8535 21 1 -0.3634 0.4295 -0.9336 22 1 -0.3633 -1.0233 0.0949 23 1 -0.3634 0.5938 0.8388 24 1 1.6012 1.9128 0.8603 25 1 1.6936 1.8778 -0.9171 26 1 3.8253 0.8480 1.0105 27 1 3.9177 2.3450 0.0513 28 1 5.6656 0.3588 -3.1991 29 1 7.1189 -0.1546 -2.3094 30 1 5.6657 -1.1827 -2.3092 31 1 5.6657 2.5224 -0.1698 32 1 7.1190 2.0087 -1.0603 33 1 5.6656 2.5226 -1.9498 34 1 5.6658 -1.1828 0.1892 35 1 7.1191 -0.1555 0.1891 36 1 5.6658 0.3586 1.0794 37 1 3.9178 -1.3467 -1.9202 38 1 3.8257 -1.3115 -0.1428 39 1 1.3322 -2.7730 -4.2546 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219508835.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:10 Heat of formation + Delta-G solvation = -10.691089 kcal Electronic energy + Delta-G solvation = -17203.864224 eV Core-core repulsion = 14759.550079 eV Total energy + Delta-G solvation = -2444.314145 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.67566 -37.81897 -34.82141 -33.17216 -31.77227 -28.61483 -28.24594 -28.16778 -26.63067 -24.25951 -23.47968 -20.90536 -19.50260 -18.41186 -17.24004 -16.55721 -15.86010 -15.60106 -15.47041 -15.33624 -15.01306 -14.54934 -14.46729 -13.85835 -13.37207 -13.14303 -13.02351 -12.84482 -12.69163 -12.61791 -12.52435 -12.39228 -12.26890 -11.97679 -11.86027 -11.66494 -11.53892 -11.17691 -10.90494 -10.53046 -9.05887 -8.87815 -8.15288 -6.26979 1.38327 1.40471 1.52828 2.39843 3.01223 3.22314 3.49233 3.95838 4.07604 4.22657 4.32884 4.38991 4.50965 4.61114 4.67653 4.71166 4.76843 4.81403 4.84788 4.89619 5.00292 5.03588 5.05268 5.07221 5.08022 5.19580 5.23865 5.38402 5.42716 5.55478 5.60878 5.72637 6.08565 6.31422 6.37008 6.54672 6.79041 6.95693 7.43272 8.92248 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028365 B = 0.009674 C = 0.007980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.908430 B = 2893.652998 C = 3507.725129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.555 5.555 3 C 0.054 3.946 4 C 0.062 3.938 5 N -0.545 5.545 6 C 0.092 3.908 7 C -0.134 4.134 8 C -0.130 4.130 9 C -0.171 4.171 10 C 0.097 3.903 11 C 0.215 3.785 12 H -0.013 1.013 13 C -0.517 4.517 14 H 0.052 0.948 15 C 0.016 3.984 16 N -0.920 5.920 17 Si 0.956 3.044 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.280 1.280 21 H -0.004 1.004 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.013 0.987 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.013 0.987 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.985 7.170 5.969 11.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.280 5.280 3 C -0.075 4.075 4 C -0.066 4.066 5 N -0.270 5.270 6 C 0.003 3.997 7 C -0.191 4.191 8 C -0.187 4.187 9 C -0.229 4.229 10 C -0.032 4.032 11 C 0.108 3.892 12 H 0.005 0.995 13 C -0.556 4.556 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.559 5.559 17 Si 0.781 3.219 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.206 1.206 21 H 0.015 0.985 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.110 0.890 25 H 0.031 0.969 26 H 0.053 0.947 27 H 0.116 0.884 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.986 7.151 5.773 11.545 hybrid contribution -0.708 -1.160 -0.519 1.455 sum 6.278 5.991 5.255 10.145 Atomic orbital electron populations 1.22022 0.87972 1.01477 0.98295 1.62308 1.07898 1.12514 1.45271 1.22215 0.95445 0.90078 0.99727 1.22185 0.93843 0.98807 0.91790 1.62486 1.07313 1.14544 1.42703 1.21223 0.86590 0.97118 0.94755 1.21829 1.01013 0.99221 0.97063 1.21844 1.01326 0.93352 1.02196 1.22381 1.02191 0.99983 0.98380 1.21962 0.95980 0.87752 0.97467 1.19186 0.90965 0.92344 0.86691 0.99529 1.21237 1.42883 0.99318 0.92167 0.92938 1.25766 0.95890 1.01606 0.95091 1.70121 1.47717 1.40025 0.98001 0.85537 0.78270 0.79670 0.78377 1.18971 1.20518 1.20554 0.98515 0.92481 0.90534 0.89049 0.96859 0.94683 0.88414 0.93311 0.90105 0.94800 0.91757 0.90399 0.92716 0.94531 0.90341 0.92315 0.93530 0.96870 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.13 9.24 127.69 1.18 3.31 16 2 N -0.55 -25.04 4.78 -900.96 -4.30 -29.35 16 3 C 0.05 2.01 5.62 86.31 0.49 2.50 16 4 C 0.06 2.10 4.83 86.31 0.42 2.52 16 5 N -0.55 -21.38 4.53 -846.22 -3.83 -25.21 16 6 C 0.09 2.89 0.71 3.53 0.00 2.89 16 7 C -0.13 -4.31 8.25 71.98 0.59 -3.71 16 8 C -0.13 -3.14 8.12 71.98 0.58 -2.55 16 9 C -0.17 -4.92 7.78 71.98 0.56 -4.36 16 10 C 0.10 4.63 4.09 86.31 0.35 4.98 16 11 C 0.22 11.37 2.01 44.17 0.09 11.46 16 12 H -0.01 -0.81 7.43 -2.39 -0.02 -0.83 16 13 C -0.52 -29.13 6.98 25.60 0.18 -28.95 16 14 H 0.05 2.99 7.80 -2.91 -0.02 2.96 16 15 C 0.02 0.91 5.45 84.65 0.46 1.37 16 16 N -0.92 -54.78 12.87 21.44 0.28 -54.50 16 17 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 22 H 0.06 2.56 7.05 -2.39 -0.02 2.54 16 23 H 0.08 2.58 8.11 -2.39 -0.02 2.56 16 24 H 0.09 2.81 8.12 -2.39 -0.02 2.79 16 25 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.04 1.20 6.57 -2.39 -0.02 1.19 16 27 H 0.10 2.73 6.06 -2.38 -0.01 2.72 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.03 1.26 6.34 -2.39 -0.02 1.24 16 31 H 0.06 1.42 6.28 -2.39 -0.01 1.40 16 32 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.04 1.23 6.48 -2.39 -0.02 1.21 16 35 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.06 1.62 6.56 -2.39 -0.02 1.61 16 37 H 0.05 2.47 6.14 -2.39 -0.01 2.46 16 38 H 0.01 0.64 6.48 -2.39 -0.02 0.63 16 39 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -63.38 290.82 0.07 -63.31 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.00 Total: 9.99 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 4.90 Total: -10.55 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -7.86 Total: -109.06 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -63.38 0.07 -63.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219508835.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.618 kcal (2) G-P(sol) polarization free energy of solvation -63.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds