Wall clock time and date at job start Mon Mar 30 2020 03:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46695 * 2 1 4 4 C 1.52992 * 109.47279 * 120.00234 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46957 * 110.99715 * 66.04529 * 6 5 4 8 8 C 1.53054 * 109.36514 * 183.18572 * 7 6 5 9 9 N 1.46960 * 109.36574 * 301.60114 * 8 7 6 10 10 C 1.46958 * 110.87777 * 59.31666 * 9 8 7 11 11 C 1.46960 * 111.00101 * 189.84471 * 6 5 4 12 12 H 1.09001 * 109.48865 * 296.77983 * 11 6 5 13 13 C 1.50695 * 109.48548 * 56.84623 * 11 6 5 14 14 H 1.08004 * 120.00575 * 359.97438 * 13 11 6 15 15 C 1.37881 * 119.99661 * 180.02562 * 13 11 6 16 16 N 1.31513 * 119.99929 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99756 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47350 * 59.99926 * 17 15 13 19 19 H 1.48509 * 109.47171 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47534 * 299.99707 * 17 15 13 21 21 H 1.09000 * 109.47104 * 299.99452 * 1 2 3 22 22 H 1.08993 * 109.47832 * 59.99829 * 1 2 3 23 23 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46580 * 240.00538 * 2 1 3 25 25 H 1.09007 * 109.46964 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.47224 * 300.00155 * 3 2 1 27 27 H 1.09000 * 109.47346 * 60.00132 * 3 2 1 28 28 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 29 29 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 31 31 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 32 32 H 1.09001 * 109.49326 * 303.15231 * 7 6 5 33 33 H 1.09002 * 109.49019 * 63.22702 * 7 6 5 34 34 H 1.09001 * 109.48558 * 61.56673 * 8 7 6 35 35 H 1.08999 * 109.49258 * 181.61139 * 8 7 6 36 36 H 1.00900 * 110.99810 * 183.17899 * 9 8 7 37 37 H 1.09001 * 109.49041 * 60.64822 * 10 9 8 38 38 H 1.09003 * 109.48983 * 180.69056 * 10 9 8 39 39 H 0.97004 * 119.99860 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 7 2.1256 -2.8881 2.3870 7 6 1.4522 -2.3905 3.5948 8 6 2.0457 -3.0784 4.8265 9 7 1.8831 -4.5333 4.6978 10 6 2.5564 -5.0308 3.4900 11 6 1.9630 -4.3430 2.2583 12 1 0.9030 -4.5851 2.1820 13 6 2.6788 -4.8213 1.0215 14 1 3.2019 -4.1156 0.3932 15 6 2.6649 -6.1600 0.6913 16 7 2.0275 -7.0193 1.4561 17 14 3.5516 -6.7529 -0.8422 18 1 4.9959 -6.4242 -0.7372 19 1 3.3872 -8.2231 -0.9718 20 1 2.9771 -6.0829 -2.0364 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8932 -0.5138 -0.8901 25 1 3.1300 1.4426 -0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6054 -0.2618 2.1369 29 1 3.1263 -0.6442 1.2950 30 1 2.0699 -2.6550 0.3001 31 1 0.5490 -2.2724 1.1420 32 1 1.5976 -1.3132 3.6746 33 1 0.3864 -2.6106 3.5337 34 1 3.1057 -2.8363 4.9028 35 1 1.5282 -2.7321 5.7212 36 1 2.2199 -5.0090 5.5215 37 1 3.6223 -4.8109 3.5511 38 1 2.4114 -6.1082 3.4104 39 1 2.0181 -7.9611 1.2240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219509958.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:31 Heat of formation + Delta-G solvation = -9.801225 kcal Electronic energy + Delta-G solvation = -16651.873832 eV Core-core repulsion = 14207.598274 eV Total energy + Delta-G solvation = -2444.275558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.29832 -36.24401 -33.36971 -32.85155 -29.54914 -28.56029 -26.98505 -25.39492 -24.22819 -21.78689 -21.18768 -19.44351 -18.63965 -16.62861 -15.54812 -14.97216 -14.61206 -14.23860 -13.95896 -13.65965 -13.37045 -12.93817 -12.86381 -12.68954 -12.15890 -11.92993 -11.86084 -11.30841 -10.95482 -10.88282 -10.74511 -10.63683 -10.51948 -10.36088 -10.19273 -10.07944 -9.87119 -9.34518 -8.89120 -8.46761 -7.56627 -7.08189 -6.02559 -4.07495 3.31513 3.36073 3.38821 4.39602 4.87442 5.11202 5.14211 5.22474 5.32611 5.34841 5.72585 5.74521 5.80983 5.91227 5.93422 5.99676 6.04337 6.12714 6.15086 6.24174 6.28964 6.42689 6.50157 6.56742 6.57807 6.81227 6.85037 6.90282 7.03050 7.42001 7.64352 7.78012 7.93793 8.16965 8.24046 8.39519 8.65491 9.00604 9.57578 11.04104 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.009640 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.537356 B = 2903.908060 C = 4020.820440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.110 4.110 5 C 0.063 3.937 6 N -0.538 5.538 7 C 0.057 3.943 8 C 0.063 3.937 9 N -0.698 5.698 10 C 0.067 3.933 11 C 0.223 3.777 12 H 0.006 0.994 13 C -0.508 4.508 14 H 0.064 0.936 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.059 0.941 36 H 0.324 0.676 37 H 0.011 0.989 38 H 0.106 0.894 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.847 10.853 0.999 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.201 4.201 4 C -0.148 4.148 5 C -0.065 4.065 6 N -0.263 5.263 7 C -0.072 4.072 8 C -0.067 4.067 9 N -0.328 5.328 10 C -0.061 4.061 11 C 0.117 3.883 12 H 0.024 0.976 13 C -0.547 4.547 14 H 0.082 0.918 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.140 0.860 37 H 0.030 0.970 38 H 0.124 0.876 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.007 10.782 0.750 10.855 hybrid contribution 0.542 -0.520 -0.537 0.923 sum -0.466 10.263 0.212 10.275 Atomic orbital electron populations 1.21881 0.95695 1.02066 1.00829 1.21099 0.95635 0.95687 0.99233 1.21822 1.00830 0.96392 1.01056 1.21679 1.01034 0.95761 0.96319 1.22036 0.96740 0.92432 0.95313 1.62212 1.55749 1.07715 1.00604 1.22064 0.95978 0.97640 0.91513 1.21876 0.98110 0.89865 0.96864 1.60731 1.62449 1.03341 1.06251 1.22302 0.93722 1.02455 0.87633 1.19203 0.95329 0.80603 0.93186 0.97622 1.21118 1.33061 0.92745 1.07763 0.91786 1.24964 0.95417 0.96784 0.96970 1.69878 1.42398 1.02823 1.37809 0.86586 0.80209 0.77492 0.83285 1.20240 1.21309 1.20272 0.93166 0.93386 0.92140 0.91211 0.92863 0.93245 0.93075 0.92860 0.91747 0.89636 0.96178 0.92053 0.95598 0.95582 0.92276 0.86043 0.97020 0.87649 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.95 37.16 0.33 -1.58 16 2 C -0.10 -1.33 2.92 -90.62 -0.26 -1.59 16 3 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 4 C -0.11 -1.76 4.61 -26.74 -0.12 -1.88 16 5 C 0.06 1.25 4.50 -3.83 -0.02 1.23 16 6 N -0.54 -11.94 4.52 -227.88 -1.03 -12.97 16 7 C 0.06 1.11 5.41 -3.76 -0.02 1.09 16 8 C 0.06 1.17 6.72 -3.76 -0.03 1.15 16 9 N -0.70 -14.64 6.90 -113.63 -0.78 -15.42 16 10 C 0.07 1.67 5.76 -3.77 -0.02 1.65 16 11 C 0.22 5.78 1.95 -68.81 -0.13 5.65 16 12 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 13 C -0.51 -13.92 7.80 -34.44 -0.27 -14.19 16 14 H 0.06 1.75 6.51 -52.48 -0.34 1.40 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -25.32 11.35 55.43 0.63 -24.69 16 17 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.82 6.49 -51.93 -0.34 0.48 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.87 5.99 -51.93 -0.31 1.56 16 31 H 0.02 0.41 6.54 -51.93 -0.34 0.07 16 32 H 0.06 1.05 6.34 -51.93 -0.33 0.72 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.32 5.95 8.90 -39.29 -0.35 5.60 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.11 2.86 6.13 -51.93 -0.32 2.54 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 296.21 15.07 4.46 4.46 Total: -1.00 -28.35 296.21 -8.91 -37.26 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.88 Total: 3.37 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.30 Total: -8.21 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -1.19 Total: -53.09 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.35 -8.91 -37.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219509958.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.458 kcal (2) G-P(sol) polarization free energy of solvation -28.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds