Wall clock time and date at job start Mon Mar 30 2020 03:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46695 * 2 1 4 4 C 1.52992 * 109.47279 * 120.00234 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46957 * 110.99715 * 66.04529 * 6 5 4 8 8 C 1.53054 * 109.36514 * 183.18572 * 7 6 5 9 9 N 1.46960 * 109.36574 * 301.60114 * 8 7 6 10 10 C 1.46958 * 110.87777 * 59.31666 * 9 8 7 11 11 C 1.46960 * 111.00101 * 189.84471 * 6 5 4 12 12 H 1.09001 * 109.48865 * 296.77983 * 11 6 5 13 13 C 1.50695 * 109.48548 * 56.84623 * 11 6 5 14 14 H 1.08004 * 120.00575 * 359.97438 * 13 11 6 15 15 C 1.37881 * 119.99661 * 180.02562 * 13 11 6 16 16 N 1.31513 * 119.99929 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99756 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47350 * 59.99926 * 17 15 13 19 19 H 1.48509 * 109.47171 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47534 * 299.99707 * 17 15 13 21 21 H 1.09000 * 109.47104 * 299.99452 * 1 2 3 22 22 H 1.08993 * 109.47832 * 59.99829 * 1 2 3 23 23 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46580 * 240.00538 * 2 1 3 25 25 H 1.09007 * 109.46964 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.47224 * 300.00155 * 3 2 1 27 27 H 1.09000 * 109.47346 * 60.00132 * 3 2 1 28 28 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 29 29 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 31 31 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 32 32 H 1.09001 * 109.49326 * 303.15231 * 7 6 5 33 33 H 1.09002 * 109.49019 * 63.22702 * 7 6 5 34 34 H 1.09001 * 109.48558 * 61.56673 * 8 7 6 35 35 H 1.08999 * 109.49258 * 181.61139 * 8 7 6 36 36 H 1.00900 * 110.99810 * 183.17899 * 9 8 7 37 37 H 1.09001 * 109.49041 * 60.64822 * 10 9 8 38 38 H 1.09003 * 109.48983 * 180.69056 * 10 9 8 39 39 H 0.97004 * 119.99860 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 7 2.1256 -2.8881 2.3870 7 6 1.4522 -2.3905 3.5948 8 6 2.0457 -3.0784 4.8265 9 7 1.8831 -4.5333 4.6978 10 6 2.5564 -5.0308 3.4900 11 6 1.9630 -4.3430 2.2583 12 1 0.9030 -4.5851 2.1820 13 6 2.6788 -4.8213 1.0215 14 1 3.2019 -4.1156 0.3932 15 6 2.6649 -6.1600 0.6913 16 7 2.0275 -7.0193 1.4561 17 14 3.5516 -6.7529 -0.8422 18 1 4.9959 -6.4242 -0.7372 19 1 3.3872 -8.2231 -0.9718 20 1 2.9771 -6.0829 -2.0364 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8932 -0.5138 -0.8901 25 1 3.1300 1.4426 -0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6054 -0.2618 2.1369 29 1 3.1263 -0.6442 1.2950 30 1 2.0699 -2.6550 0.3001 31 1 0.5490 -2.2724 1.1420 32 1 1.5976 -1.3132 3.6746 33 1 0.3864 -2.6106 3.5337 34 1 3.1057 -2.8363 4.9028 35 1 1.5282 -2.7321 5.7212 36 1 2.2199 -5.0090 5.5215 37 1 3.6223 -4.8109 3.5511 38 1 2.4114 -6.1082 3.4104 39 1 2.0181 -7.9611 1.2240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219509958.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:31 Heat of formation + Delta-G solvation = -29.566123 kcal Electronic energy + Delta-G solvation = -16652.730902 eV Core-core repulsion = 14207.598274 eV Total energy + Delta-G solvation = -2445.132628 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.00681 -37.54491 -35.15654 -34.70602 -31.43951 -30.00456 -27.97813 -27.32731 -25.92011 -23.57777 -22.72690 -20.66598 -20.46291 -18.63176 -17.40607 -16.46501 -16.23123 -15.70174 -15.63350 -15.30821 -15.00750 -14.52670 -14.38063 -14.10765 -13.69450 -13.41711 -13.00890 -12.83046 -12.64495 -12.54920 -12.45150 -12.30283 -11.98216 -11.87947 -11.77763 -11.50914 -11.37131 -11.01450 -10.86601 -10.55688 -9.29682 -8.91786 -8.13706 -6.26630 1.41122 1.42822 1.50699 2.40283 3.11307 3.30444 3.56459 3.98987 4.09448 4.15844 4.25378 4.35268 4.47264 4.54391 4.68385 4.69530 4.80662 4.84851 4.88225 4.92781 4.96809 5.04019 5.07842 5.09629 5.21044 5.26430 5.36235 5.47094 5.53197 5.57576 5.65407 5.67597 6.07208 6.27046 6.37971 6.68018 6.77697 6.89350 7.42713 8.92131 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.009640 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.537356 B = 2903.908060 C = 4020.820440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.138 4.138 4 C -0.097 4.097 5 C 0.066 3.934 6 N -0.544 5.544 7 C 0.054 3.946 8 C 0.063 3.937 9 N -0.704 5.704 10 C 0.082 3.918 11 C 0.230 3.770 12 H -0.042 1.042 13 C -0.525 4.525 14 H 0.059 0.941 15 C 0.014 3.986 16 N -0.917 5.917 17 Si 0.961 3.039 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.271 1.271 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.037 0.963 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.011 0.989 32 H 0.094 0.906 33 H 0.012 0.988 34 H 0.030 0.970 35 H 0.097 0.903 36 H 0.341 0.659 37 H -0.001 1.001 38 H 0.077 0.923 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 12.738 1.124 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.195 4.195 4 C -0.135 4.135 5 C -0.062 4.062 6 N -0.269 5.269 7 C -0.074 4.074 8 C -0.067 4.067 9 N -0.335 5.335 10 C -0.047 4.047 11 C 0.122 3.878 12 H -0.025 1.025 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.786 3.214 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.197 1.197 21 H 0.078 0.922 22 H 0.084 0.916 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.112 0.888 33 H 0.030 0.970 34 H 0.048 0.952 35 H 0.116 0.884 36 H 0.158 0.842 37 H 0.018 0.982 38 H 0.095 0.905 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.575 12.689 0.891 12.733 hybrid contribution 0.355 -1.080 -0.538 1.257 sum -0.220 11.609 0.353 11.616 Atomic orbital electron populations 1.21855 0.95141 1.01040 1.02202 1.21093 0.96106 0.96963 0.97445 1.21765 1.00933 0.94533 1.02278 1.21572 1.00803 0.92854 0.98222 1.22027 0.95899 0.94736 0.93518 1.62230 1.56466 1.05710 1.02483 1.22222 0.94947 0.99560 0.90664 1.22013 0.98814 0.87929 0.97899 1.60618 1.61993 1.05260 1.05627 1.21889 0.92999 1.00747 0.89084 1.18959 0.92172 0.83238 0.93435 1.02459 1.21366 1.33279 0.93115 1.08621 0.92250 1.25754 0.96064 0.96859 0.99897 1.70018 1.43330 1.03004 1.39277 0.85573 0.79139 0.77059 0.79654 1.19588 1.20743 1.19655 0.92209 0.91631 0.94338 0.92244 0.92699 0.91774 0.92135 0.91596 0.92164 0.92345 0.97083 0.88803 0.96967 0.95218 0.88439 0.84187 0.98236 0.90522 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.95 71.98 0.64 -2.89 16 2 C -0.10 -2.49 2.92 -10.80 -0.03 -2.52 16 3 C -0.14 -2.76 9.19 71.98 0.66 -2.10 16 4 C -0.10 -2.96 4.61 30.59 0.14 -2.82 16 5 C 0.07 2.67 4.50 86.30 0.39 3.06 16 6 N -0.54 -24.35 4.52 -874.88 -3.95 -28.30 16 7 C 0.05 2.05 5.41 86.31 0.47 2.52 16 8 C 0.06 2.21 6.72 86.31 0.58 2.79 16 9 N -0.70 -29.18 6.90 -513.42 -3.54 -32.72 16 10 C 0.08 4.18 5.76 86.31 0.50 4.68 16 11 C 0.23 12.30 1.95 44.17 0.09 12.38 16 12 H -0.04 -2.61 8.14 -2.39 -0.02 -2.62 16 13 C -0.53 -29.69 7.80 25.60 0.20 -29.49 16 14 H 0.06 3.33 6.51 -2.91 -0.02 3.31 16 15 C 0.01 0.76 5.30 84.66 0.45 1.21 16 16 N -0.92 -53.68 11.35 21.45 0.24 -53.44 16 17 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.04 1.09 6.56 -2.39 -0.02 1.07 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.85 6.49 -2.39 -0.02 1.84 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 2.65 5.99 -2.39 -0.01 2.64 16 31 H 0.01 0.46 6.54 -2.39 -0.02 0.45 16 32 H 0.09 2.92 6.34 -2.39 -0.02 2.91 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.34 12.14 8.90 -89.69 -0.80 11.34 16 37 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.08 4.32 6.13 -2.39 -0.01 4.30 16 39 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -62.66 296.21 -0.94 -63.60 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.21 Total: 17.89 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 4.08 Total: -13.17 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -7.26 Total: -114.46 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -62.66 -0.94 -63.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219509958.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.032 kcal (2) G-P(sol) polarization free energy of solvation -62.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds