Wall clock time and date at job start Mon Mar 30 2020 03:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47277 * 2 1 4 4 C 1.52997 * 109.47277 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47008 * 180.02562 * 4 3 2 6 6 C 1.46950 * 110.99882 * 66.05300 * 5 4 3 7 7 H 1.08997 * 109.50663 * 303.16414 * 6 5 4 8 8 C 1.53006 * 109.49193 * 63.21929 * 6 5 4 9 9 C 1.53051 * 109.36631 * 183.18703 * 6 5 4 10 10 N 1.46959 * 109.36246 * 301.59773 * 9 6 5 11 11 C 1.46958 * 110.88193 * 59.32006 * 10 9 6 12 12 C 1.46962 * 110.99696 * 189.84617 * 5 4 3 13 13 H 1.08991 * 109.49325 * 296.78209 * 12 5 4 14 14 C 1.50702 * 109.50707 * 56.83996 * 12 5 4 15 15 H 1.08010 * 119.99824 * 359.89656 * 14 12 5 16 16 C 1.37868 * 120.00352 * 179.89928 * 14 12 5 17 17 N 1.31519 * 119.99801 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00455 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46795 * 59.99888 * 18 16 14 20 20 H 1.48498 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46997 * 300.00532 * 18 16 14 22 22 H 1.09000 * 109.47343 * 59.99040 * 1 2 3 23 23 H 1.08998 * 109.47514 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46700 * 299.99714 * 1 2 3 25 25 H 1.09003 * 109.46750 * 240.01067 * 2 1 3 26 26 H 1.09000 * 109.47617 * 120.00485 * 2 1 3 27 27 H 1.09003 * 109.46359 * 60.00827 * 3 2 1 28 28 H 1.09000 * 109.47718 * 300.00731 * 3 2 1 29 29 H 1.09001 * 109.47046 * 60.00629 * 4 3 2 30 30 H 1.09000 * 109.47617 * 300.00485 * 4 3 2 31 31 H 1.09001 * 109.46801 * 179.89197 * 8 6 5 32 32 H 1.09001 * 109.46998 * 299.88794 * 8 6 5 33 33 H 1.09000 * 109.47050 * 59.89085 * 8 6 5 34 34 H 1.09001 * 109.48846 * 61.56393 * 9 6 5 35 35 H 1.08996 * 109.49317 * 181.63359 * 9 6 5 36 36 H 1.00900 * 111.00308 * 183.18732 * 10 9 6 37 37 H 1.08992 * 109.48961 * 60.64501 * 11 10 9 38 38 H 1.09003 * 109.48623 * 180.69248 * 11 10 9 39 39 H 0.97008 * 119.99960 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8275 0.0013 6 6 3.7096 3.5092 1.2551 7 1 2.6300 3.4727 1.4002 8 6 4.4059 2.8131 2.4263 9 6 4.1661 4.9684 1.1841 10 7 5.6162 5.0144 0.9500 11 6 5.9663 4.3326 -0.3039 12 6 5.5098 2.8735 -0.2327 13 1 6.0262 2.3703 0.5846 14 6 5.8320 2.1820 -1.5324 15 1 5.0392 1.7497 -2.1251 16 6 7.1385 2.1012 -1.9649 17 7 8.1038 2.6280 -1.2435 18 14 7.5380 1.2435 -3.5756 19 1 6.8332 1.9282 -4.6890 20 1 9.0031 1.2932 -3.8128 21 1 7.0950 -0.1721 -3.5056 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9562 0.8901 28 1 1.6767 1.9565 -0.8899 29 1 3.9337 0.9286 -0.8892 30 1 3.9330 0.9288 0.8908 31 1 4.1475 3.3202 3.3560 32 1 4.0805 1.7740 2.4768 33 1 5.4855 2.8491 2.2806 34 1 3.6496 5.4716 0.3666 35 1 3.9335 5.4684 2.1242 36 1 5.9526 5.9656 0.9504 37 1 5.4703 4.8285 -1.1382 38 1 7.0460 4.3695 -0.4487 39 1 9.0232 2.5708 -1.5476 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219510212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:23 Heat of formation + Delta-G solvation = -4.127754 kcal Electronic energy + Delta-G solvation = -16910.831572 eV Core-core repulsion = 14466.802035 eV Total energy + Delta-G solvation = -2444.029537 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.75170 -35.25334 -33.21597 -32.92087 -30.43291 -28.63848 -26.35540 -25.31289 -23.91495 -21.74272 -21.44456 -20.07182 -17.61118 -16.69653 -15.67425 -15.07495 -14.58739 -14.10013 -13.80585 -13.60630 -13.42016 -13.29794 -12.67894 -12.41232 -12.04071 -11.80866 -11.62088 -11.19285 -10.94141 -10.80932 -10.72511 -10.67634 -10.53306 -10.37527 -10.20270 -9.97195 -9.83788 -9.27050 -8.86205 -8.45416 -7.53627 -7.00820 -6.01990 -4.06476 3.31676 3.36292 3.39080 4.40057 4.90521 5.13128 5.25201 5.35441 5.37364 5.43419 5.62306 5.76065 5.90953 5.94050 6.03979 6.09337 6.14002 6.17097 6.25148 6.32815 6.37218 6.48527 6.56340 6.59755 6.82723 6.85888 6.89029 6.99902 7.08686 7.45280 7.70399 7.78980 7.96002 8.18967 8.25538 8.41647 8.67945 9.01742 9.58457 11.04510 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.010704 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.893445 B = 2615.176894 C = 3773.136627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.115 4.115 4 C 0.059 3.941 5 N -0.531 5.531 6 C 0.080 3.920 7 H 0.066 0.934 8 C -0.174 4.174 9 C 0.068 3.932 10 N -0.694 5.694 11 C 0.067 3.933 12 C 0.221 3.779 13 H 0.014 0.986 14 C -0.508 4.508 15 H 0.063 0.937 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.023 0.977 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.025 0.975 35 H 0.058 0.942 36 H 0.323 0.677 37 H 0.010 0.990 38 H 0.105 0.895 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.397 -0.201 3.940 10.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.069 4.069 5 N -0.256 5.256 6 C -0.029 4.029 7 H 0.084 0.916 8 C -0.233 4.233 9 C -0.062 4.062 10 N -0.324 5.324 11 C -0.062 4.062 12 C 0.114 3.886 13 H 0.031 0.969 14 C -0.547 4.547 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.139 0.861 37 H 0.028 0.972 38 H 0.123 0.877 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.277 -0.477 3.928 10.086 hybrid contribution 0.364 -0.161 -0.844 0.933 sum -8.914 -0.638 3.085 9.454 Atomic orbital electron populations 1.21757 0.96463 1.00901 1.01506 1.21496 0.95137 0.97744 1.01807 1.21643 0.96653 0.95400 1.01599 1.22034 0.92893 0.90723 1.01249 1.62414 1.18318 1.14534 1.30293 1.21657 0.97809 0.93760 0.89694 0.91551 1.22304 1.03606 0.99342 0.98048 1.21875 0.89728 0.95924 0.98676 1.60715 1.12070 1.19963 1.39633 1.22307 1.02885 0.95033 0.85930 1.19230 0.81006 0.92202 0.96115 0.96889 1.21142 0.92379 1.35459 1.05704 0.91874 1.24949 0.96314 0.95627 0.97223 1.69876 1.00042 1.45074 1.37946 0.86599 0.77073 0.80068 0.83907 1.20279 1.21334 1.20304 0.92906 0.93305 0.93123 0.92035 0.92504 0.92931 0.91821 0.89708 0.95907 0.93887 0.93766 0.90587 0.95713 0.92313 0.86125 0.97151 0.87681 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 2 C -0.12 -1.69 5.93 -26.73 -0.16 -1.85 16 3 C -0.12 -1.85 5.15 -26.73 -0.14 -1.98 16 4 C 0.06 1.17 4.56 -3.82 -0.02 1.16 16 5 N -0.53 -11.58 4.47 -219.95 -0.98 -12.56 16 6 C 0.08 1.52 2.77 -67.66 -0.19 1.34 16 7 H 0.07 1.15 6.33 -51.93 -0.33 0.82 16 8 C -0.17 -3.24 8.38 37.16 0.31 -2.93 16 9 C 0.07 1.25 6.15 -3.77 -0.02 1.23 16 10 N -0.69 -14.16 6.22 -113.63 -0.71 -14.87 16 11 C 0.07 1.63 5.75 -3.76 -0.02 1.61 16 12 C 0.22 5.58 1.57 -68.80 -0.11 5.48 16 13 H 0.01 0.38 6.34 -51.93 -0.33 0.05 16 14 C -0.51 -13.82 7.81 -34.44 -0.27 -14.09 16 15 H 0.06 1.72 6.51 -52.48 -0.34 1.38 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -25.14 11.34 55.43 0.63 -24.51 16 18 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.81 6.49 -51.93 -0.34 0.47 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.85 5.99 -51.93 -0.31 1.54 16 30 H 0.02 0.46 6.11 -51.93 -0.32 0.14 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.80 6.36 -51.93 -0.33 0.47 16 33 H 0.08 1.65 5.94 -51.93 -0.31 1.34 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.32 5.82 8.90 -39.29 -0.35 5.47 16 37 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.11 2.82 6.12 -51.93 -0.32 2.50 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 290.98 15.07 4.39 4.39 Total: -1.00 -27.75 290.98 -8.67 -36.42 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.63 Total: 4.78 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.34 Total: -9.82 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -1.06 Total: -51.94 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.75 -8.67 -36.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219510212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.291 kcal (2) G-P(sol) polarization free energy of solvation -27.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds