Wall clock time and date at job start Mon Mar 30 2020 03:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47277 * 2 1 4 4 C 1.52997 * 109.47277 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47008 * 180.02562 * 4 3 2 6 6 C 1.46950 * 110.99882 * 66.05300 * 5 4 3 7 7 H 1.08997 * 109.50663 * 303.16414 * 6 5 4 8 8 C 1.53006 * 109.49193 * 63.21929 * 6 5 4 9 9 C 1.53051 * 109.36631 * 183.18703 * 6 5 4 10 10 N 1.46959 * 109.36246 * 301.59773 * 9 6 5 11 11 C 1.46958 * 110.88193 * 59.32006 * 10 9 6 12 12 C 1.46962 * 110.99696 * 189.84617 * 5 4 3 13 13 H 1.08991 * 109.49325 * 296.78209 * 12 5 4 14 14 C 1.50702 * 109.50707 * 56.83996 * 12 5 4 15 15 H 1.08010 * 119.99824 * 359.89656 * 14 12 5 16 16 C 1.37868 * 120.00352 * 179.89928 * 14 12 5 17 17 N 1.31519 * 119.99801 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00455 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46795 * 59.99888 * 18 16 14 20 20 H 1.48498 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46997 * 300.00532 * 18 16 14 22 22 H 1.09000 * 109.47343 * 59.99040 * 1 2 3 23 23 H 1.08998 * 109.47514 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46700 * 299.99714 * 1 2 3 25 25 H 1.09003 * 109.46750 * 240.01067 * 2 1 3 26 26 H 1.09000 * 109.47617 * 120.00485 * 2 1 3 27 27 H 1.09003 * 109.46359 * 60.00827 * 3 2 1 28 28 H 1.09000 * 109.47718 * 300.00731 * 3 2 1 29 29 H 1.09001 * 109.47046 * 60.00629 * 4 3 2 30 30 H 1.09000 * 109.47617 * 300.00485 * 4 3 2 31 31 H 1.09001 * 109.46801 * 179.89197 * 8 6 5 32 32 H 1.09001 * 109.46998 * 299.88794 * 8 6 5 33 33 H 1.09000 * 109.47050 * 59.89085 * 8 6 5 34 34 H 1.09001 * 109.48846 * 61.56393 * 9 6 5 35 35 H 1.08996 * 109.49317 * 181.63359 * 9 6 5 36 36 H 1.00900 * 111.00308 * 183.18732 * 10 9 6 37 37 H 1.08992 * 109.48961 * 60.64501 * 11 10 9 38 38 H 1.09003 * 109.48623 * 180.69248 * 11 10 9 39 39 H 0.97008 * 119.99960 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8275 0.0013 6 6 3.7096 3.5092 1.2551 7 1 2.6300 3.4727 1.4002 8 6 4.4059 2.8131 2.4263 9 6 4.1661 4.9684 1.1841 10 7 5.6162 5.0144 0.9500 11 6 5.9663 4.3326 -0.3039 12 6 5.5098 2.8735 -0.2327 13 1 6.0262 2.3703 0.5846 14 6 5.8320 2.1820 -1.5324 15 1 5.0392 1.7497 -2.1251 16 6 7.1385 2.1012 -1.9649 17 7 8.1038 2.6280 -1.2435 18 14 7.5380 1.2435 -3.5756 19 1 6.8332 1.9282 -4.6890 20 1 9.0031 1.2932 -3.8128 21 1 7.0950 -0.1721 -3.5056 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9562 0.8901 28 1 1.6767 1.9565 -0.8899 29 1 3.9337 0.9286 -0.8892 30 1 3.9330 0.9288 0.8908 31 1 4.1475 3.3202 3.3560 32 1 4.0805 1.7740 2.4768 33 1 5.4855 2.8491 2.2806 34 1 3.6496 5.4716 0.3666 35 1 3.9335 5.4684 2.1242 36 1 5.9526 5.9656 0.9504 37 1 5.4703 4.8285 -1.1382 38 1 7.0460 4.3695 -0.4487 39 1 9.0232 2.5708 -1.5476 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219510212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:23 Heat of formation + Delta-G solvation = -23.184315 kcal Electronic energy + Delta-G solvation = -16911.657927 eV Core-core repulsion = 14466.802035 eV Total energy + Delta-G solvation = -2444.855892 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43260 -36.64278 -35.18603 -34.40885 -32.23340 -30.09873 -27.93874 -27.19938 -25.49585 -23.37788 -22.95664 -21.50867 -19.35247 -18.62121 -17.43973 -16.56691 -16.39886 -15.59033 -15.48884 -15.18996 -15.01737 -14.77940 -14.23272 -13.88681 -13.58248 -13.22741 -13.13969 -12.83810 -12.79225 -12.43771 -12.28363 -12.18252 -12.00698 -11.87808 -11.79626 -11.66726 -11.38505 -10.94192 -10.77796 -10.51879 -9.23042 -8.78308 -8.11560 -6.23474 1.41188 1.42527 1.50318 2.41244 3.13600 3.34751 3.60730 4.05940 4.10207 4.18188 4.34451 4.38530 4.46272 4.57023 4.71029 4.76487 4.79589 4.81135 4.90940 4.93826 5.02186 5.09417 5.11894 5.13147 5.24817 5.33271 5.37825 5.47457 5.51669 5.60207 5.70464 5.79383 6.12568 6.32223 6.43665 6.72823 6.84868 6.93889 7.45618 8.93741 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.010704 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.893445 B = 2615.176894 C = 3773.136627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.102 4.102 4 C 0.062 3.938 5 N -0.540 5.540 6 C 0.074 3.926 7 H 0.094 0.906 8 C -0.164 4.164 9 C 0.068 3.932 10 N -0.695 5.695 11 C 0.082 3.918 12 C 0.229 3.771 13 H -0.026 1.026 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.014 3.986 17 N -0.916 5.916 18 Si 0.957 3.043 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.272 1.272 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.024 0.976 35 H 0.095 0.905 36 H 0.338 0.662 37 H -0.006 1.006 38 H 0.075 0.925 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 -0.136 4.414 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.140 4.140 4 C -0.066 4.066 5 N -0.264 5.264 6 C -0.035 4.035 7 H 0.112 0.888 8 C -0.223 4.223 9 C -0.062 4.062 10 N -0.326 5.326 11 C -0.048 4.048 12 C 0.122 3.878 13 H -0.008 1.008 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.185 4.185 17 N -0.556 5.556 18 Si 0.783 3.217 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.197 1.197 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.114 0.886 36 H 0.155 0.845 37 H 0.012 0.988 38 H 0.093 0.907 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.180 -0.403 4.415 12.027 hybrid contribution 0.933 -0.169 -0.930 1.328 sum -10.247 -0.573 3.485 10.838 Atomic orbital electron populations 1.21712 0.94292 1.02084 1.02034 1.21478 0.96967 0.95909 1.01652 1.21533 0.93334 0.97245 1.01866 1.22022 0.95586 0.89514 0.99507 1.62396 1.15786 1.15763 1.32435 1.21874 0.99378 0.93841 0.88384 0.88807 1.22178 1.01006 0.99839 0.99242 1.22013 0.87912 0.95833 1.00450 1.60604 1.14041 1.20870 1.37127 1.21892 1.00762 0.94960 0.87138 1.18941 0.82979 0.92027 0.93862 1.00821 1.21422 0.92549 1.35857 1.06571 0.92530 1.25703 0.96181 0.96252 1.00350 1.70014 1.00220 1.45916 1.39405 0.85625 0.76936 0.79122 0.80039 1.19792 1.20821 1.19731 0.92752 0.91864 0.92219 0.92774 0.92215 0.91612 0.92379 0.92518 0.96603 0.90991 0.93698 0.94271 0.95755 0.88649 0.84456 0.98773 0.90663 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.91 71.98 0.71 -2.18 16 2 C -0.12 -3.12 5.93 30.59 0.18 -2.94 16 3 C -0.10 -3.11 5.15 30.59 0.16 -2.95 16 4 C 0.06 2.46 4.56 86.30 0.39 2.85 16 5 N -0.54 -23.52 4.47 -849.78 -3.80 -27.32 16 6 C 0.07 2.67 2.77 44.92 0.12 2.80 16 7 H 0.09 2.92 6.33 -2.39 -0.02 2.90 16 8 C -0.16 -5.87 8.38 71.98 0.60 -5.27 16 9 C 0.07 2.32 6.15 86.31 0.53 2.85 16 10 N -0.70 -28.03 6.22 -513.43 -3.19 -31.23 16 11 C 0.08 4.10 5.75 86.31 0.50 4.60 16 12 C 0.23 11.95 1.57 44.18 0.07 12.02 16 13 H -0.03 -1.52 6.34 -2.39 -0.02 -1.53 16 14 C -0.53 -29.46 7.81 25.60 0.20 -29.26 16 15 H 0.06 3.17 6.51 -2.91 -0.02 3.15 16 16 C 0.01 0.80 5.30 84.65 0.45 1.25 16 17 N -0.92 -53.27 11.34 21.44 0.24 -53.03 16 18 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 22 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 1.83 6.49 -2.39 -0.02 1.82 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 2.55 5.99 -2.39 -0.01 2.53 16 30 H 0.02 0.65 6.11 -2.39 -0.01 0.63 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.04 1.57 6.36 -2.39 -0.02 1.55 16 33 H 0.04 1.70 5.94 -2.39 -0.01 1.68 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.34 11.87 8.90 -89.69 -0.80 11.07 16 37 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.08 4.20 6.12 -2.39 -0.01 4.18 16 39 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -61.27 290.98 -0.58 -61.86 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.22 Total: 19.78 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 3.92 Total: -16.23 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -6.75 Total: -111.58 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -61.27 -0.58 -61.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219510212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.672 kcal (2) G-P(sol) polarization free energy of solvation -61.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds