Wall clock time and date at job start Mon Mar 30 2020 03:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47292 * 2 1 4 4 C 1.53004 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.46752 * 180.02562 * 4 3 2 6 6 C 1.46955 * 111.00176 * 66.04509 * 5 4 3 7 7 C 1.53050 * 109.36328 * 183.18663 * 6 5 4 8 8 H 1.08996 * 109.49088 * 61.57119 * 7 6 5 9 9 C 1.53002 * 109.48470 * 181.62922 * 7 6 5 10 10 N 1.46956 * 109.36517 * 301.59580 * 7 6 5 11 11 C 1.46955 * 110.87824 * 59.32297 * 10 7 6 12 12 C 1.46956 * 110.99953 * 189.84535 * 5 4 3 13 13 H 1.09005 * 109.48847 * 296.78175 * 12 5 4 14 14 C 1.50701 * 109.48682 * 56.84210 * 12 5 4 15 15 H 1.07999 * 120.00408 * 35.25002 * 14 12 5 16 16 C 1.37881 * 119.99916 * 215.24940 * 14 12 5 17 17 N 1.31510 * 120.00389 * 185.78734 * 16 14 12 18 18 Si 1.86806 * 119.99831 * 5.78700 * 16 14 12 19 19 H 1.48507 * 109.46765 * 84.77400 * 18 16 14 20 20 H 1.48501 * 109.47064 * 204.76934 * 18 16 14 21 21 H 1.48497 * 109.47290 * 324.77378 * 18 16 14 22 22 H 1.09004 * 109.47317 * 59.99975 * 1 2 3 23 23 H 1.09000 * 109.47436 * 300.00199 * 1 2 3 24 24 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47432 * 120.00037 * 2 1 3 26 26 H 1.09005 * 109.47287 * 240.00274 * 2 1 3 27 27 H 1.09004 * 109.46959 * 300.00244 * 3 2 1 28 28 H 1.08991 * 109.46827 * 59.99687 * 3 2 1 29 29 H 1.08993 * 109.46891 * 300.00048 * 4 3 2 30 30 H 1.08995 * 109.47030 * 60.00367 * 4 3 2 31 31 H 1.09004 * 109.49226 * 303.15605 * 6 5 4 32 32 H 1.08997 * 109.49115 * 63.21931 * 6 5 4 33 33 H 1.08997 * 109.47450 * 60.00387 * 9 7 6 34 34 H 1.09008 * 109.47195 * 179.97438 * 9 7 6 35 35 H 1.08992 * 109.47711 * 300.00022 * 9 7 6 36 36 H 1.00895 * 110.99625 * 183.18741 * 10 7 6 37 37 H 1.09008 * 109.48708 * 60.64831 * 11 10 7 38 38 H 1.08994 * 109.48771 * 180.68615 * 11 10 7 39 39 H 0.97001 * 120.00640 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.7105 3.5090 1.2543 7 6 4.1670 4.9681 1.1831 8 1 3.6499 5.4715 0.3663 9 6 3.8414 5.6697 2.5032 10 7 5.6169 5.0142 0.9480 11 6 5.9660 4.3327 -0.3063 12 6 5.5095 2.8736 -0.2352 13 1 6.0266 2.3702 0.5817 14 6 5.8302 2.1825 -1.5354 15 1 5.1457 2.2534 -2.3678 16 6 6.9974 1.4597 -1.6624 17 7 7.3331 0.9521 -2.8283 18 14 8.1021 1.2013 -0.1783 19 1 7.6226 0.0293 0.5976 20 1 9.4942 0.9572 -0.6340 21 1 8.0676 2.4117 0.6812 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.9336 0.9285 0.8891 30 1 3.9329 0.9288 -0.8908 31 1 2.6309 3.4724 1.3998 32 1 4.2071 3.0129 2.0881 33 1 4.3595 5.1665 3.3196 34 1 4.1670 6.7088 2.4525 35 1 2.7662 5.6337 2.6783 36 1 5.9532 5.9654 0.9484 37 1 5.4694 4.8289 -1.1402 38 1 7.0456 4.3697 -0.4519 39 1 8.1544 0.4439 -2.9177 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219511442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:56 Heat of formation + Delta-G solvation = -32.722688 kcal Electronic energy + Delta-G solvation = -16687.581602 eV Core-core repulsion = 14242.312095 eV Total energy + Delta-G solvation = -2445.269507 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23200 -36.88228 -35.40338 -34.27476 -32.99931 -30.08475 -29.00712 -26.24046 -25.66372 -23.39697 -22.15820 -21.62932 -20.44879 -19.16042 -17.43742 -16.53054 -16.10119 -15.80543 -15.76468 -15.52038 -15.02312 -14.66532 -14.59549 -13.96107 -13.81182 -13.33568 -13.14529 -13.02384 -12.82176 -12.53007 -12.39563 -12.13400 -11.91411 -11.86458 -11.82599 -11.78297 -11.49108 -11.12506 -11.07755 -10.75733 -9.39021 -8.97886 -8.33377 -6.36533 1.27906 1.31504 1.43666 2.29188 2.94052 3.21666 3.37028 4.01123 4.03195 4.14676 4.29402 4.34222 4.37704 4.48223 4.53504 4.59885 4.72859 4.79166 4.81332 4.85184 4.94706 4.96913 5.03417 5.04598 5.13127 5.20681 5.29438 5.34145 5.40307 5.48256 5.52081 5.56686 6.05086 6.12183 6.34860 6.63145 6.67749 6.75920 7.30555 8.82903 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.016553 B = 0.011793 C = 0.007642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.092266 B = 2373.693724 C = 3662.963595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C -0.101 4.101 4 C 0.066 3.934 5 N -0.544 5.544 6 C 0.058 3.942 7 C 0.083 3.917 8 H 0.036 0.964 9 C -0.131 4.131 10 N -0.695 5.695 11 C 0.078 3.922 12 C 0.193 3.807 13 H -0.004 1.004 14 C -0.500 4.500 15 H 0.036 0.964 16 C 0.024 3.976 17 N -0.939 5.939 18 Si 0.932 3.068 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.251 1.251 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.011 0.989 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.019 0.981 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.346 0.654 37 H 0.020 0.980 38 H 0.057 0.943 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 4.841 10.955 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.139 4.139 4 C -0.062 4.062 5 N -0.269 5.269 6 C -0.070 4.070 7 C -0.027 4.027 8 H 0.054 0.946 9 C -0.189 4.189 10 N -0.328 5.328 11 C -0.052 4.052 12 C 0.085 3.915 13 H 0.013 0.987 14 C -0.539 4.539 15 H 0.055 0.945 16 C -0.175 4.175 17 N -0.579 5.579 18 Si 0.756 3.244 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.175 1.175 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.164 0.836 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.844 4.450 10.867 15.323 hybrid contribution 1.113 -0.286 -0.121 1.156 sum -8.731 4.164 10.746 14.458 Atomic orbital electron populations 1.21706 0.94047 1.02142 1.02134 1.21490 0.97180 0.95972 1.01565 1.21528 0.93008 0.97289 1.02041 1.21944 0.95905 0.89008 0.99320 1.62156 1.15132 1.16111 1.33464 1.22317 1.00605 0.94087 0.90034 1.21591 0.87549 0.95281 0.98245 0.94624 1.21706 1.02242 1.00124 0.94826 1.60659 1.14453 1.21645 1.36015 1.22012 0.98813 0.95161 0.89219 1.19538 0.85307 0.92874 0.93806 0.98652 1.20949 1.04922 1.30430 0.97642 0.94538 1.25728 0.98739 0.94938 0.98069 1.70021 1.25403 1.37174 1.25260 0.85968 0.78259 0.79659 0.80491 1.19949 1.20766 1.17492 0.92801 0.91889 0.91883 0.92057 0.93232 0.92406 0.91081 0.97100 0.92642 0.88974 0.96247 0.92445 0.91329 0.90401 0.83579 0.96213 0.92441 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.91 71.98 0.71 -2.30 16 2 C -0.12 -3.36 5.93 30.59 0.18 -3.18 16 3 C -0.10 -3.16 5.14 30.60 0.16 -3.00 16 4 C 0.07 2.71 4.77 86.30 0.41 3.12 16 5 N -0.54 -23.27 4.52 -874.89 -3.95 -27.23 16 6 C 0.06 1.99 4.69 86.31 0.40 2.39 16 7 C 0.08 2.57 3.19 44.92 0.14 2.71 16 8 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 9 C -0.13 -2.88 9.46 71.98 0.68 -2.20 16 10 N -0.69 -24.31 6.55 -491.15 -3.21 -27.53 16 11 C 0.08 3.40 5.98 86.31 0.52 3.92 16 12 C 0.19 9.40 1.63 44.17 0.07 9.48 16 13 H 0.00 -0.21 5.24 -2.38 -0.01 -0.22 16 14 C -0.50 -28.82 7.35 25.60 0.19 -28.64 16 15 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 16 C 0.02 1.40 5.47 84.66 0.46 1.86 16 17 N -0.94 -58.34 13.96 21.45 0.30 -58.04 16 18 Si 0.93 45.41 27.02 68.60 1.85 47.26 16 19 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.25 -11.81 6.78 99.48 0.67 -11.14 16 22 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.07 1.95 6.49 -2.39 -0.02 1.93 16 29 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 30 H 0.06 2.69 6.66 -2.39 -0.02 2.68 16 31 H 0.09 2.67 6.33 -2.39 -0.02 2.66 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.35 10.06 8.83 -89.70 -0.79 9.26 16 37 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -65.22 300.46 -0.91 -66.13 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.17 Total: 15.24 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 3.93 Total: -15.83 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -6.87 Total: -112.80 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.85 Total: 47.26 kcal Total: -65.22 -0.91 -66.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219511442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.405 kcal (2) G-P(sol) polarization free energy of solvation -65.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds