Wall clock time and date at job start Mon Mar 30 2020 03:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46957 * 110.99659 * 2 1 4 4 C 1.53049 * 109.36482 * 183.18871 * 3 2 1 5 5 N 1.46997 * 109.37775 * 301.59770 * 4 3 2 6 6 C 1.46898 * 111.03108 * 183.17493 * 5 4 3 7 7 C 1.52996 * 109.47232 * 284.79393 * 6 5 4 8 8 C 1.53002 * 109.46965 * 44.79388 * 6 5 4 9 9 C 1.52997 * 109.47150 * 164.79109 * 6 5 4 10 10 C 1.46955 * 110.85483 * 59.30687 * 5 4 3 11 11 H 1.09001 * 109.48909 * 60.66229 * 10 5 4 12 12 C 1.50694 * 109.49265 * 180.71059 * 10 5 4 13 13 H 1.08008 * 119.99686 * 35.88045 * 12 10 5 14 14 C 1.37872 * 120.00640 * 215.88081 * 12 10 5 15 15 N 1.31520 * 119.99480 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00528 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47386 * 90.00037 * 16 14 12 18 18 H 1.48502 * 109.47430 * 210.00212 * 16 14 12 19 19 H 1.48500 * 109.47013 * 329.99992 * 16 14 12 20 20 C 1.46954 * 111.00497 * 123.79806 * 2 1 3 21 21 H 1.09000 * 109.47402 * 296.19611 * 1 2 3 22 22 H 1.08996 * 109.47629 * 56.20141 * 1 2 3 23 23 H 1.09001 * 109.46867 * 176.19885 * 1 2 3 24 24 H 1.09001 * 109.49045 * 303.15686 * 3 2 1 25 25 H 1.09000 * 109.48929 * 63.19967 * 3 2 1 26 26 H 1.09002 * 109.49019 * 61.56866 * 4 3 2 27 27 H 1.08997 * 109.49078 * 181.60950 * 4 3 2 28 28 H 1.08999 * 109.47541 * 59.99916 * 7 6 5 29 29 H 1.09008 * 109.47024 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47459 * 299.99913 * 7 6 5 31 31 H 1.09000 * 109.46974 * 59.99992 * 8 6 5 32 32 H 1.09001 * 109.46867 * 179.97438 * 8 6 5 33 33 H 1.08999 * 109.46927 * 299.99545 * 8 6 5 34 34 H 1.09006 * 109.46936 * 90.25101 * 9 6 5 35 35 H 1.08998 * 109.47402 * 210.24931 * 9 6 5 36 36 H 1.08999 * 109.47231 * 330.24864 * 9 6 5 37 37 H 0.97009 * 119.99548 * 180.02562 * 15 14 12 38 38 H 1.09005 * 109.48356 * 56.84354 * 20 2 1 39 39 H 1.09003 * 109.50334 * 296.79393 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5233 1.3292 -0.0803 5 7 4.0505 0.5659 1.0600 6 6 5.5195 0.5655 1.0602 7 6 6.0293 -0.3888 -0.0216 8 6 6.0299 1.9793 0.7748 9 6 6.0292 0.1056 2.4275 10 6 3.5235 -0.8059 1.0597 11 1 3.8253 -1.3113 0.1423 12 6 4.0687 -1.5542 2.2487 13 1 4.2211 -1.0406 3.1865 14 6 4.3731 -2.8945 2.1395 15 7 4.1871 -3.5200 0.9976 16 14 5.0482 -3.8222 3.6135 17 1 3.9234 -4.3960 4.3949 18 1 5.9351 -4.9175 3.1453 19 1 5.8230 -2.8908 4.4722 20 6 1.9957 -0.7631 1.1400 21 1 -0.3634 0.4536 0.9221 22 1 -0.3634 0.5716 -0.8539 23 1 -0.3633 -1.0254 -0.0681 24 1 1.6012 1.9129 -0.8602 25 1 1.6933 1.8775 0.9172 26 1 3.8253 0.8481 -1.0107 27 1 3.9176 2.3450 -0.0516 28 1 5.6663 -0.0612 -0.9957 29 1 7.1194 -0.3888 -0.0217 30 1 5.6657 -1.3961 0.1817 31 1 5.6666 2.6592 1.5455 32 1 7.1199 1.9791 0.7754 33 1 5.6668 2.3069 -0.1993 34 1 6.1542 -0.9773 2.4232 35 1 6.9873 0.5811 2.6368 36 1 5.3091 0.3852 3.1965 37 1 4.4009 -4.4632 0.9209 38 1 1.6014 -1.7789 1.1109 39 1 1.6938 -0.2823 2.0705 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219512646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:55 Heat of formation + Delta-G solvation = 19.843989 kcal Electronic energy + Delta-G solvation = -17583.149892 eV Core-core repulsion = 15140.159847 eV Total energy + Delta-G solvation = -2442.990045 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.01586 -36.10231 -33.03425 -31.45397 -29.93143 -26.83330 -26.65950 -26.36855 -24.85397 -22.56923 -21.54942 -19.30558 -17.72943 -16.50903 -15.10353 -14.64305 -14.38403 -14.02900 -13.78750 -13.64255 -13.38252 -12.76619 -12.70259 -12.14986 -11.78535 -11.49938 -11.22797 -11.11662 -10.97465 -10.96774 -10.72650 -10.62572 -10.50340 -10.11161 -10.08212 -9.94378 -9.65069 -9.14074 -8.81544 -8.41506 -7.57292 -6.96945 -6.01905 -4.00877 3.28929 3.37132 3.40006 4.39700 4.73858 4.98256 5.33996 5.65528 5.75001 5.78256 5.85597 5.87896 6.01146 6.06470 6.11872 6.27200 6.29731 6.33242 6.46770 6.52025 6.58242 6.63025 6.72184 6.75647 6.86738 6.92257 7.09636 7.23899 7.42433 7.60647 7.68790 7.79776 7.87981 7.96586 8.19951 8.37595 8.72163 9.10118 9.58306 11.05069 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.013363 C = 0.009438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.554678 B = 2094.894725 C = 2966.065130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.549 5.549 3 C 0.063 3.937 4 C 0.051 3.949 5 N -0.531 5.531 6 C 0.125 3.875 7 C -0.178 4.178 8 C -0.144 4.144 9 C -0.118 4.118 10 C 0.203 3.797 11 H 0.050 0.950 12 C -0.495 4.495 13 H 0.067 0.933 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.884 3.116 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.271 1.271 20 C 0.075 3.925 21 H 0.015 0.985 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.018 0.982 36 H 0.059 0.941 37 H 0.261 0.739 38 H 0.069 0.931 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 7.432 -1.377 7.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.274 5.274 3 C -0.065 4.065 4 C -0.078 4.078 5 N -0.257 5.257 6 C 0.036 3.964 7 C -0.236 4.236 8 C -0.201 4.201 9 C -0.176 4.176 10 C 0.097 3.903 11 H 0.068 0.932 12 C -0.535 4.535 13 H 0.085 0.915 14 C -0.140 4.140 15 N -0.528 5.528 16 Si 0.712 3.288 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.196 1.196 20 C -0.052 4.052 21 H 0.034 0.966 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.675 7.245 -1.461 7.422 hybrid contribution 0.214 -0.602 0.685 0.937 sum -0.461 6.643 -0.775 6.704 Atomic orbital electron populations 1.22272 0.89254 1.01397 0.99081 1.62317 1.06161 1.13173 1.45776 1.22050 0.95516 0.89867 0.99086 1.22154 0.93565 0.98162 0.93931 1.62703 1.05841 1.17857 1.39280 1.20620 0.87790 0.92446 0.95569 1.22534 0.99354 1.03840 0.97891 1.22090 0.99731 0.97624 1.00699 1.22133 0.97061 1.02554 0.95812 1.19512 0.88654 0.83448 0.98730 0.93230 1.21166 1.41547 0.93537 0.97204 0.91459 1.24948 0.95746 0.97737 0.95529 1.69949 1.48503 1.10288 1.24011 0.86714 0.79066 0.79780 0.83232 1.20749 1.21354 1.19594 1.22465 0.98391 0.96168 0.88195 0.96602 0.92654 0.91924 0.92144 0.95191 0.95219 0.91638 0.94680 0.94434 0.88547 0.92762 0.93352 0.93328 0.90395 0.96330 0.92232 0.92928 0.91282 0.96263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.60 60.06 0.58 1.06 16 2 N -0.55 -11.13 4.97 -242.76 -1.21 -12.33 16 3 C 0.06 1.16 5.62 -3.77 -0.02 1.14 16 4 C 0.05 0.97 4.68 -3.75 -0.02 0.95 16 5 N -0.53 -11.41 4.36 -212.29 -0.93 -12.34 16 6 C 0.13 2.52 0.69 -131.61 -0.09 2.43 16 7 C -0.18 -3.72 7.41 37.16 0.28 -3.45 16 8 C -0.14 -2.40 7.51 37.16 0.28 -2.12 16 9 C -0.12 -2.44 7.30 37.16 0.27 -2.17 16 10 C 0.20 4.92 1.47 -68.81 -0.10 4.82 16 11 H 0.05 1.37 5.54 -51.93 -0.29 1.09 16 12 C -0.50 -12.67 4.58 -34.44 -0.16 -12.83 16 13 H 0.07 1.75 5.81 -52.48 -0.30 1.45 16 14 C 0.06 1.64 4.91 -17.82 -0.09 1.55 16 15 N -0.89 -24.55 12.63 55.43 0.70 -23.85 16 16 Si 0.88 20.58 29.44 -169.99 -5.00 15.58 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 C 0.08 1.74 4.88 -3.77 -0.02 1.73 16 21 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 22 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.03 0.61 6.98 -51.93 -0.36 0.24 16 27 H 0.07 1.11 6.00 -51.93 -0.31 0.80 16 28 H 0.03 0.71 6.98 -51.93 -0.36 0.35 16 29 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 30 H 0.10 2.38 5.46 -51.93 -0.28 2.09 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 33 H 0.05 0.76 6.27 -51.93 -0.33 0.44 16 34 H 0.08 1.78 5.76 -51.93 -0.30 1.49 16 35 H 0.02 0.33 7.81 -51.93 -0.41 -0.08 16 36 H 0.06 1.28 6.72 -51.93 -0.35 0.93 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 284.39 15.07 4.29 4.29 Total: -1.00 -26.72 284.39 -7.90 -34.62 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.65 Total: 0.94 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 0.91 Total: -6.90 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -1.43 Total: -48.52 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.00 Total: 15.58 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.72 -7.90 -34.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219512646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.460 kcal (2) G-P(sol) polarization free energy of solvation -26.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds