Wall clock time and date at job start Mon Mar 30 2020 03:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46957 * 110.99659 * 2 1 4 4 C 1.53049 * 109.36482 * 183.18871 * 3 2 1 5 5 N 1.46997 * 109.37775 * 301.59770 * 4 3 2 6 6 C 1.46898 * 111.03108 * 183.17493 * 5 4 3 7 7 C 1.52996 * 109.47232 * 284.79393 * 6 5 4 8 8 C 1.53002 * 109.46965 * 44.79388 * 6 5 4 9 9 C 1.52997 * 109.47150 * 164.79109 * 6 5 4 10 10 C 1.46955 * 110.85483 * 59.30687 * 5 4 3 11 11 H 1.09001 * 109.48909 * 60.66229 * 10 5 4 12 12 C 1.50694 * 109.49265 * 180.71059 * 10 5 4 13 13 H 1.08008 * 119.99686 * 35.88045 * 12 10 5 14 14 C 1.37872 * 120.00640 * 215.88081 * 12 10 5 15 15 N 1.31520 * 119.99480 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00528 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47386 * 90.00037 * 16 14 12 18 18 H 1.48502 * 109.47430 * 210.00212 * 16 14 12 19 19 H 1.48500 * 109.47013 * 329.99992 * 16 14 12 20 20 C 1.46954 * 111.00497 * 123.79806 * 2 1 3 21 21 H 1.09000 * 109.47402 * 296.19611 * 1 2 3 22 22 H 1.08996 * 109.47629 * 56.20141 * 1 2 3 23 23 H 1.09001 * 109.46867 * 176.19885 * 1 2 3 24 24 H 1.09001 * 109.49045 * 303.15686 * 3 2 1 25 25 H 1.09000 * 109.48929 * 63.19967 * 3 2 1 26 26 H 1.09002 * 109.49019 * 61.56866 * 4 3 2 27 27 H 1.08997 * 109.49078 * 181.60950 * 4 3 2 28 28 H 1.08999 * 109.47541 * 59.99916 * 7 6 5 29 29 H 1.09008 * 109.47024 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47459 * 299.99913 * 7 6 5 31 31 H 1.09000 * 109.46974 * 59.99992 * 8 6 5 32 32 H 1.09001 * 109.46867 * 179.97438 * 8 6 5 33 33 H 1.08999 * 109.46927 * 299.99545 * 8 6 5 34 34 H 1.09006 * 109.46936 * 90.25101 * 9 6 5 35 35 H 1.08998 * 109.47402 * 210.24931 * 9 6 5 36 36 H 1.08999 * 109.47231 * 330.24864 * 9 6 5 37 37 H 0.97009 * 119.99548 * 180.02562 * 15 14 12 38 38 H 1.09005 * 109.48356 * 56.84354 * 20 2 1 39 39 H 1.09003 * 109.50334 * 296.79393 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5233 1.3292 -0.0803 5 7 4.0505 0.5659 1.0600 6 6 5.5195 0.5655 1.0602 7 6 6.0293 -0.3888 -0.0216 8 6 6.0299 1.9793 0.7748 9 6 6.0292 0.1056 2.4275 10 6 3.5235 -0.8059 1.0597 11 1 3.8253 -1.3113 0.1423 12 6 4.0687 -1.5542 2.2487 13 1 4.2211 -1.0406 3.1865 14 6 4.3731 -2.8945 2.1395 15 7 4.1871 -3.5200 0.9976 16 14 5.0482 -3.8222 3.6135 17 1 3.9234 -4.3960 4.3949 18 1 5.9351 -4.9175 3.1453 19 1 5.8230 -2.8908 4.4722 20 6 1.9957 -0.7631 1.1400 21 1 -0.3634 0.4536 0.9221 22 1 -0.3634 0.5716 -0.8539 23 1 -0.3633 -1.0254 -0.0681 24 1 1.6012 1.9129 -0.8602 25 1 1.6933 1.8775 0.9172 26 1 3.8253 0.8481 -1.0107 27 1 3.9176 2.3450 -0.0516 28 1 5.6663 -0.0612 -0.9957 29 1 7.1194 -0.3888 -0.0217 30 1 5.6657 -1.3961 0.1817 31 1 5.6666 2.6592 1.5455 32 1 7.1199 1.9791 0.7754 33 1 5.6668 2.3069 -0.1993 34 1 6.1542 -0.9773 2.4232 35 1 6.9873 0.5811 2.6368 36 1 5.3091 0.3852 3.1965 37 1 4.4009 -4.4632 0.9209 38 1 1.6014 -1.7789 1.1109 39 1 1.6938 -0.2823 2.0705 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219512646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:55 Heat of formation + Delta-G solvation = 1.479155 kcal Electronic energy + Delta-G solvation = -17583.946251 eV Core-core repulsion = 15140.159847 eV Total energy + Delta-G solvation = -2443.786404 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67510 -37.67471 -34.97032 -33.03717 -31.72786 -28.46455 -28.14774 -28.01410 -26.66564 -24.16318 -23.27833 -20.96014 -19.39922 -18.45684 -16.82762 -16.44495 -15.95879 -15.58879 -15.39557 -15.34372 -15.01531 -14.39868 -14.25425 -13.99393 -13.27659 -12.97620 -12.89247 -12.80889 -12.68898 -12.49340 -12.42531 -12.22432 -12.19831 -11.91009 -11.75766 -11.61545 -11.35869 -10.86190 -10.73479 -10.38601 -9.15643 -8.72199 -8.03809 -6.06787 1.40894 1.44364 1.52498 2.45573 3.10146 3.31225 3.49560 4.18652 4.22101 4.35620 4.37810 4.44481 4.57890 4.60294 4.66849 4.77069 4.83238 4.88206 4.90271 4.96631 4.99344 5.06824 5.09558 5.17673 5.25141 5.31607 5.40245 5.46889 5.63623 5.79489 5.89107 5.91450 6.13590 6.29944 6.40646 6.59333 6.93800 7.10065 7.55232 9.02896 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.013363 C = 0.009438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.554678 B = 2094.894725 C = 2966.065130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.567 5.567 3 C 0.064 3.936 4 C 0.050 3.950 5 N -0.536 5.536 6 C 0.117 3.883 7 C -0.168 4.168 8 C -0.135 4.135 9 C -0.113 4.113 10 C 0.211 3.789 11 H 0.012 0.988 12 C -0.490 4.490 13 H 0.061 0.939 14 C 0.021 3.979 15 N -0.921 5.921 16 Si 0.936 3.064 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.263 1.263 20 C 0.088 3.912 21 H 0.023 0.977 22 H 0.084 0.916 23 H 0.057 0.943 24 H 0.093 0.907 25 H 0.031 0.969 26 H 0.015 0.985 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.258 0.742 38 H 0.039 0.961 39 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.480 9.617 -1.341 9.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.292 5.292 3 C -0.064 4.064 4 C -0.078 4.078 5 N -0.261 5.261 6 C 0.028 3.972 7 C -0.227 4.227 8 C -0.192 4.192 9 C -0.170 4.170 10 C 0.104 3.896 11 H 0.030 0.970 12 C -0.529 4.529 13 H 0.079 0.921 14 C -0.177 4.177 15 N -0.562 5.562 16 Si 0.762 3.238 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.187 1.187 20 C -0.041 4.041 21 H 0.041 0.959 22 H 0.103 0.897 23 H 0.076 0.924 24 H 0.111 0.889 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -0.468 9.454 -1.418 9.571 hybrid contribution 0.136 -1.228 0.637 1.390 sum -0.332 8.226 -0.781 8.269 Atomic orbital electron populations 1.22331 0.86942 1.01868 1.00689 1.62248 1.08433 1.14392 1.44078 1.22150 0.94886 0.88800 1.00560 1.22280 0.94409 0.98961 0.92191 1.62650 1.06895 1.16014 1.40583 1.20788 0.87062 0.94606 0.94748 1.22397 1.00281 1.01737 0.98273 1.21990 1.00884 0.94801 1.01528 1.21996 0.98199 1.00867 0.95955 1.19236 0.89348 0.84705 0.96339 0.97024 1.21290 1.40668 0.93663 0.97287 0.92112 1.25510 0.96289 0.98554 0.97380 1.70076 1.50151 1.10209 1.25731 0.85896 0.78444 0.78668 0.80762 1.20706 1.21540 1.18736 1.22105 0.97775 0.95104 0.89082 0.95884 0.89750 0.92373 0.88907 0.95047 0.96714 0.88670 0.94632 0.92736 0.92733 0.91897 0.91506 0.92221 0.93349 0.93500 0.93512 0.93336 0.94243 0.97123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.60 127.69 1.23 2.17 16 2 N -0.57 -22.42 4.97 -921.95 -4.58 -27.00 16 3 C 0.06 2.17 5.62 86.31 0.49 2.66 16 4 C 0.05 1.80 4.68 86.30 0.40 2.20 16 5 N -0.54 -22.57 4.36 -825.56 -3.60 -26.17 16 6 C 0.12 4.55 0.69 3.53 0.00 4.55 16 7 C -0.17 -7.00 7.41 71.98 0.53 -6.47 16 8 C -0.13 -4.00 7.51 71.98 0.54 -3.46 16 9 C -0.11 -4.54 7.30 71.98 0.53 -4.01 16 10 C 0.21 10.45 1.47 44.17 0.07 10.51 16 11 H 0.01 0.68 5.54 -2.39 -0.01 0.67 16 12 C -0.49 -25.66 4.58 25.60 0.12 -25.55 16 13 H 0.06 3.21 5.81 -2.91 -0.02 3.20 16 14 C 0.02 1.15 4.91 84.65 0.42 1.57 16 15 N -0.92 -52.91 12.63 21.45 0.27 -52.64 16 16 Si 0.94 43.08 29.44 68.60 2.02 45.10 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 20 C 0.09 4.14 4.88 86.31 0.42 4.56 16 21 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 22 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.09 2.57 8.13 -2.39 -0.02 2.55 16 25 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.01 0.58 6.98 -2.39 -0.02 0.56 16 27 H 0.10 2.87 6.00 -2.39 -0.01 2.85 16 28 H 0.03 1.42 6.98 -2.39 -0.02 1.41 16 29 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.05 2.76 5.46 -2.39 -0.01 2.75 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.76 8.11 -2.39 -0.02 1.74 16 33 H 0.06 1.64 6.27 -2.39 -0.01 1.63 16 34 H 0.05 2.21 5.76 -2.38 -0.01 2.20 16 35 H 0.05 1.58 7.81 -2.39 -0.02 1.56 16 36 H 0.05 1.97 6.72 -2.39 -0.02 1.95 16 37 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 38 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -58.94 284.39 -0.15 -59.09 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.00 Total: 12.88 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 4.74 Total: -11.28 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -7.91 Total: -105.80 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.02 Total: 45.10 kcal Total: -58.94 -0.15 -59.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219512646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.573 kcal (2) G-P(sol) polarization free energy of solvation -58.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds