Wall clock time and date at job start Mon Mar 30 2020 03:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47017 * 2 1 4 4 C 1.53001 * 109.46930 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.46881 * 180.02562 * 4 3 2 6 6 C 1.44250 * 110.99938 * 66.04558 * 5 4 3 7 7 C 1.54248 * 108.63773 * 219.84506 * 6 5 4 8 8 C 1.46140 * 111.90927 * 281.38033 * 7 6 5 9 9 N 1.48109 * 112.18776 * 60.86844 * 8 7 6 10 10 C 1.44262 * 109.97874 * 279.72593 * 9 8 7 11 11 H 1.09006 * 108.86698 * 333.10605 * 10 9 8 12 12 C 1.50700 * 108.86640 * 214.69606 * 10 9 8 13 13 H 1.08001 * 119.99806 * 240.00083 * 12 10 9 14 14 C 1.37872 * 120.00053 * 59.99526 * 12 10 9 15 15 N 1.31519 * 120.00221 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00112 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46827 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47290 * 120.00328 * 16 14 12 19 19 H 1.48503 * 109.47169 * 240.00404 * 16 14 12 20 20 C 1.48198 * 110.99408 * 194.28455 * 5 4 3 21 21 H 1.08998 * 109.47529 * 59.99838 * 1 2 3 22 22 H 1.09003 * 109.47249 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46994 * 299.99726 * 1 2 3 24 24 H 1.09002 * 109.46994 * 240.00274 * 2 1 3 25 25 H 1.08998 * 109.47529 * 120.00162 * 2 1 3 26 26 H 1.09002 * 109.47015 * 60.00287 * 3 2 1 27 27 H 1.08999 * 109.47125 * 299.99866 * 3 2 1 28 28 H 1.09002 * 109.47207 * 60.00196 * 4 3 2 29 29 H 1.08998 * 109.47403 * 300.00031 * 4 3 2 30 30 H 1.08998 * 109.60494 * 100.10429 * 6 5 4 31 31 H 1.09000 * 109.75082 * 339.67675 * 6 5 4 32 32 H 1.09001 * 108.99370 * 160.75544 * 7 6 5 33 33 H 1.09001 * 108.92942 * 41.96398 * 7 6 5 34 34 H 1.08999 * 108.93922 * 300.16753 * 8 7 6 35 35 H 1.09002 * 108.86742 * 181.51491 * 8 7 6 36 36 H 1.00901 * 111.00154 * 42.95247 * 9 8 7 37 37 H 0.97001 * 119.99731 * 180.02562 * 15 14 12 38 38 H 1.08998 * 108.82438 * 312.52903 * 20 5 4 39 39 H 1.09002 * 108.82590 * 70.94882 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8276 0.0000 6 6 3.7169 3.4965 1.2312 7 6 3.2957 4.9441 0.9051 8 6 4.4505 5.8070 0.6649 9 7 5.2631 5.3468 -0.4847 10 6 6.1244 4.2636 -0.0773 11 1 6.3304 4.3590 0.9889 12 6 7.4245 4.3643 -0.8327 13 1 7.7414 3.5538 -1.4724 14 6 8.2091 5.4910 -0.7075 15 7 7.8234 6.4777 0.0717 16 14 9.8203 5.6160 -1.6445 17 1 10.0246 4.3818 -2.4447 18 1 9.7763 6.7921 -2.5500 19 1 10.9412 5.7732 -0.6831 20 6 5.5006 2.8815 -0.3420 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 3.9329 0.9289 -0.8909 29 1 3.9337 0.9286 0.8891 30 1 4.5819 3.5078 1.8943 31 1 2.8911 2.9756 1.7159 32 1 2.7222 5.3437 1.7415 33 1 2.6666 4.9373 0.0150 34 1 5.0754 5.8184 1.5579 35 1 4.0987 6.8195 0.4667 36 1 4.6743 5.0701 -1.2560 37 1 8.3753 7.2706 0.1595 38 1 6.0310 2.1368 0.2515 39 1 5.6207 2.6397 -1.3980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219513778.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:27 Heat of formation + Delta-G solvation = -3.651952 kcal Electronic energy + Delta-G solvation = -16514.865881 eV Core-core repulsion = 14070.856976 eV Total energy + Delta-G solvation = -2444.008905 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.69313 -35.81130 -33.61035 -32.86894 -30.88128 -28.91683 -26.34610 -25.00533 -24.02815 -21.99281 -20.72827 -20.21010 -18.99484 -16.62523 -15.62328 -15.26955 -14.77827 -14.36822 -14.10533 -13.83959 -13.33584 -13.14164 -12.86207 -12.39120 -12.21957 -12.08605 -11.70763 -11.17238 -11.12564 -10.98387 -10.84872 -10.81496 -10.59720 -10.41955 -10.24305 -10.13127 -9.93060 -9.41075 -8.85887 -8.28912 -7.62294 -6.66023 -5.76860 -3.88930 3.38989 3.47119 3.50073 4.31412 4.58883 4.93308 5.02240 5.12875 5.36284 5.43066 5.49158 5.58761 5.69046 5.72469 5.80753 5.84552 5.90579 5.98121 6.04621 6.12293 6.21008 6.28649 6.35229 6.40497 6.44163 6.62988 6.73416 6.81495 6.89809 7.08013 7.45207 7.64003 7.81780 8.02930 8.42919 8.83677 8.96855 9.36071 9.78482 11.28231 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.043961 B = 0.006290 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.773057 B = 4450.530631 C = 4926.027038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.116 4.116 4 C 0.062 3.938 5 N -0.557 5.557 6 C 0.064 3.936 7 C -0.141 4.141 8 C 0.059 3.941 9 N -0.625 5.625 10 C 0.219 3.781 11 H 0.025 0.975 12 C -0.524 4.524 13 H 0.050 0.950 14 C 0.085 3.915 15 N -0.855 5.855 16 Si 0.883 3.117 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.288 1.288 20 C 0.039 3.961 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.023 0.977 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.315 0.685 37 H 0.253 0.747 38 H 0.019 0.981 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.598 -8.618 1.732 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.066 4.066 5 N -0.281 5.281 6 C -0.065 4.065 7 C -0.181 4.181 8 C -0.071 4.071 9 N -0.252 5.252 10 C 0.110 3.890 11 H 0.043 0.957 12 C -0.563 4.563 13 H 0.069 0.931 14 C -0.121 4.121 15 N -0.491 5.491 16 Si 0.711 3.289 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.214 1.214 20 C -0.089 4.089 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.259 -7.682 1.544 13.717 hybrid contribution 0.670 -1.053 0.257 1.274 sum -10.589 -8.735 1.801 13.844 Atomic orbital electron populations 1.21755 0.96024 1.01201 1.01801 1.21499 0.95675 0.97253 1.01755 1.21673 0.95254 0.95905 1.02527 1.22019 0.94717 0.89830 1.00023 1.60597 1.18648 1.14389 1.34497 1.21794 0.98975 0.95057 0.90631 1.21395 1.00296 0.95528 1.00856 1.20847 0.92924 0.96862 0.96461 1.61260 1.19831 1.38755 1.05368 1.18978 0.91076 0.82365 0.96587 0.95691 1.21008 1.03163 1.02871 1.29272 0.93130 1.24863 0.96898 0.95601 0.94720 1.70065 1.36336 1.06000 1.36684 0.86725 0.84281 0.77901 0.79994 1.20025 1.21122 1.21394 1.23449 0.83618 1.01942 0.99903 0.92720 0.93076 0.92901 0.92098 0.92409 0.92132 0.91306 0.91428 0.95837 0.94409 0.92397 0.93285 0.92063 0.92426 0.93366 0.86841 0.93745 0.96297 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.15 0.37 -0.99 16 2 C -0.12 -1.27 5.93 -26.73 -0.16 -1.43 16 3 C -0.12 -1.44 5.18 -26.73 -0.14 -1.57 16 4 C 0.06 0.92 4.85 -3.82 -0.02 0.90 16 5 N -0.56 -9.94 4.02 -234.26 -0.94 -10.88 16 6 C 0.06 1.11 5.11 -4.59 -0.02 1.08 16 7 C -0.14 -2.44 5.50 -29.33 -0.16 -2.60 16 8 C 0.06 1.25 5.95 -6.41 -0.04 1.21 16 9 N -0.63 -15.04 5.68 -111.90 -0.64 -15.67 16 10 C 0.22 5.48 1.78 -69.79 -0.12 5.36 16 11 H 0.03 0.70 6.55 -51.93 -0.34 0.36 16 12 C -0.52 -14.57 8.63 -34.44 -0.30 -14.87 16 13 H 0.05 1.40 7.67 -52.49 -0.40 0.99 16 14 C 0.08 2.39 5.38 -17.82 -0.10 2.30 16 15 N -0.85 -25.06 12.75 55.43 0.71 -24.35 16 16 Si 0.88 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 C 0.04 0.83 4.76 -2.62 -0.01 0.81 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.76 6.37 -51.93 -0.33 0.43 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 29 H 0.02 0.35 8.11 -51.93 -0.42 -0.07 16 30 H 0.04 0.73 6.96 -51.93 -0.36 0.37 16 31 H 0.06 0.87 5.85 -51.93 -0.30 0.57 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 34 H 0.06 1.33 7.38 -51.93 -0.38 0.95 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.31 7.30 8.18 -39.29 -0.32 6.98 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.02 0.40 8.04 -51.93 -0.42 -0.02 16 39 H 0.06 1.40 7.91 -51.93 -0.41 0.99 16 LS Contribution 298.88 15.07 4.50 4.50 Total: -1.00 -28.57 298.88 -9.13 -37.71 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.05 Total: 1.88 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -0.70 Total: -9.81 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.87 Total: -50.90 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.57 -9.13 -37.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219513778.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.057 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds