Wall clock time and date at job start Mon Mar 30 2020 03:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.53003 * 109.46771 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47204 * 181.46634 * 4 3 2 6 6 C 1.44175 * 110.99846 * 302.70222 * 5 4 3 7 7 C 1.54327 * 112.61495 * 217.51205 * 6 5 4 8 8 C 1.54313 * 111.73078 * 318.91153 * 7 6 5 9 9 N 1.44178 * 112.60603 * 318.91901 * 8 7 6 10 10 C 1.48081 * 109.89775 * 94.34811 * 9 8 7 11 11 H 1.08993 * 108.94511 * 40.33186 * 10 9 8 12 12 C 1.50695 * 108.94288 * 158.95262 * 10 9 8 13 13 H 1.07997 * 120.00494 * 122.64656 * 12 10 9 14 14 C 1.37881 * 119.99944 * 302.64425 * 12 10 9 15 15 N 1.31512 * 119.99962 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99955 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47042 * 90.00220 * 16 14 12 18 18 H 1.48497 * 109.47397 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.47330 * 330.00235 * 16 14 12 20 20 C 1.46094 * 112.15928 * 279.63945 * 10 9 8 21 21 H 1.09004 * 109.46712 * 300.00384 * 1 2 3 22 22 H 1.09002 * 109.46838 * 59.99554 * 1 2 3 23 23 H 1.09000 * 109.47265 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46851 * 119.99896 * 2 1 3 25 25 H 1.08996 * 109.46915 * 239.99816 * 2 1 3 26 26 H 1.08994 * 109.47077 * 299.99730 * 3 2 1 27 27 H 1.08996 * 109.47405 * 60.00116 * 3 2 1 28 28 H 1.09008 * 109.46897 * 301.46063 * 4 3 2 29 29 H 1.08994 * 109.47263 * 61.46595 * 4 3 2 30 30 H 1.08996 * 108.85408 * 338.31828 * 6 5 4 31 31 H 1.09001 * 108.85633 * 96.70442 * 6 5 4 32 32 H 1.08994 * 109.02702 * 198.33152 * 7 6 5 33 33 H 1.09000 * 108.96298 * 79.45276 * 7 6 5 34 34 H 1.08991 * 108.85550 * 198.11021 * 8 7 6 35 35 H 1.08999 * 108.77268 * 79.66621 * 8 7 6 36 36 H 1.00900 * 111.00440 * 331.17181 * 9 8 7 37 37 H 0.97001 * 119.99573 * 179.97438 * 15 14 12 38 38 H 1.08999 * 108.94965 * 299.99768 * 20 10 9 39 39 H 1.09002 * 108.87041 * 181.32935 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0598 2.8269 0.0348 6 6 3.5460 3.5853 -1.0785 7 6 4.5806 4.5789 -1.6477 8 6 5.3732 5.2833 -0.5265 9 7 4.5402 5.6605 0.5882 10 6 4.5781 4.6045 1.6256 11 1 5.5985 4.2319 1.7143 12 6 4.1608 5.2002 2.9455 13 1 3.3223 4.7847 3.4845 14 6 4.8496 6.2757 3.4649 15 7 5.8704 6.7820 2.8083 16 14 4.3329 7.0137 5.1013 17 1 5.0601 6.3332 6.2029 18 1 4.6569 8.4628 5.1152 19 1 2.8708 6.8316 5.2868 20 6 3.6914 3.4877 1.3079 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.9337 0.9059 0.8758 29 1 3.9330 0.9517 -0.9037 30 1 3.2493 2.8950 -1.8680 31 1 2.6674 4.1410 -0.7507 32 1 4.0617 5.3307 -2.2423 33 1 5.2764 4.0374 -2.2886 34 1 5.8414 6.1787 -0.9352 35 1 6.1529 4.6094 -0.1715 36 1 3.5935 5.8388 0.2882 37 1 6.3547 7.5390 3.1736 38 1 2.6691 3.8581 1.2314 39 1 3.7429 2.7561 2.1142 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219513844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:30 Heat of formation + Delta-G solvation = -21.067674 kcal Electronic energy + Delta-G solvation = -16657.518580 eV Core-core repulsion = 14212.754473 eV Total energy + Delta-G solvation = -2444.764108 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51062 -37.16878 -35.03648 -34.38550 -32.81771 -30.06919 -28.06611 -26.54155 -25.79905 -23.49414 -22.34355 -21.75689 -20.20504 -18.62325 -16.88336 -16.62355 -16.45915 -15.97287 -15.63684 -15.53482 -14.71489 -14.37073 -14.25074 -14.20230 -13.59643 -13.29465 -13.10234 -12.79716 -12.63704 -12.60581 -12.19289 -12.15220 -12.07606 -12.02918 -11.79996 -11.55799 -11.35818 -11.30334 -10.78827 -10.44946 -9.13026 -8.51870 -7.89306 -6.12136 1.44994 1.45999 1.55134 2.49273 3.10167 3.30211 3.90354 3.94175 4.00564 4.14255 4.21661 4.24080 4.40851 4.41719 4.51121 4.62089 4.69312 4.76614 4.80541 4.86999 4.95593 4.96734 5.09899 5.13559 5.18987 5.26960 5.31471 5.35726 5.38622 5.44595 5.55153 5.82583 6.14450 6.32893 6.40544 6.72352 7.18693 7.27429 7.60508 9.12994 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.007708 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.465194 B = 3631.833901 C = 4428.540111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.149 4.149 4 C 0.058 3.942 5 N -0.547 5.547 6 C 0.062 3.938 7 C -0.136 4.136 8 C 0.078 3.922 9 N -0.651 5.651 10 C 0.223 3.777 11 H -0.005 1.005 12 C -0.553 4.553 13 H 0.047 0.953 14 C 0.038 3.962 15 N -0.877 5.877 16 Si 0.946 3.054 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.271 1.271 20 C 0.063 3.937 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.031 0.969 36 H 0.311 0.689 37 H 0.252 0.748 38 H 0.022 0.978 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 -10.702 -8.332 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.188 4.188 4 C -0.069 4.069 5 N -0.270 5.270 6 C -0.067 4.067 7 C -0.176 4.176 8 C -0.053 4.053 9 N -0.279 5.279 10 C 0.115 3.885 11 H 0.013 0.987 12 C -0.593 4.593 13 H 0.066 0.934 14 C -0.166 4.166 15 N -0.513 5.513 16 Si 0.772 3.228 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.065 4.065 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.127 0.873 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.565 -10.175 -8.068 14.551 hybrid contribution -1.331 0.046 0.698 1.503 sum -7.896 -10.129 -7.371 14.808 Atomic orbital electron populations 1.21770 0.95496 1.02088 1.01521 1.21429 0.96203 0.95333 1.02452 1.22243 0.96877 0.98343 1.01379 1.22383 0.93041 0.88762 1.02748 1.61727 1.59973 1.02833 1.02450 1.21827 0.95390 0.95910 0.93612 1.22689 0.98636 0.97944 0.98328 1.21503 0.96454 0.96332 0.91053 1.60943 1.12486 1.44920 1.09542 1.17874 0.93657 0.86711 0.90262 0.98694 1.21330 1.16059 1.16862 1.05001 0.93432 1.25626 0.94681 0.96872 0.99386 1.70248 1.19766 1.23142 1.38165 0.85790 0.78618 0.77504 0.80884 1.20373 1.21226 1.19551 1.21622 0.97152 0.97164 0.90584 0.93607 0.92679 0.91601 0.92064 0.90876 0.91913 0.93757 0.91496 0.89566 0.90067 0.95704 0.91105 0.91232 0.94437 0.95071 0.87251 0.93872 0.95950 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.91 71.98 0.71 -1.95 16 2 C -0.12 -2.22 5.93 30.59 0.18 -2.04 16 3 C -0.15 -3.62 4.67 30.59 0.14 -3.48 16 4 C 0.06 1.59 5.07 86.30 0.44 2.03 16 5 N -0.55 -19.07 4.48 -910.26 -4.08 -23.15 16 6 C 0.06 1.91 3.97 87.26 0.35 2.26 16 7 C -0.14 -4.35 6.21 31.49 0.20 -4.16 16 8 C 0.08 3.32 6.12 87.26 0.53 3.85 16 9 N -0.65 -31.84 5.57 -507.72 -2.83 -34.67 16 10 C 0.22 11.46 2.03 41.82 0.08 11.55 16 11 H 0.00 -0.29 7.37 -2.39 -0.02 -0.31 16 12 C -0.55 -31.16 8.69 25.60 0.22 -30.93 16 13 H 0.05 2.62 7.72 -2.91 -0.02 2.60 16 14 C 0.04 2.17 5.37 84.66 0.45 2.62 16 15 N -0.88 -52.78 12.63 21.45 0.27 -52.51 16 16 Si 0.95 44.61 29.54 68.60 2.03 46.63 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 18 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 20 C 0.06 2.67 3.20 83.95 0.27 2.94 16 21 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 22 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.48 6.82 -2.39 -0.02 1.47 16 27 H 0.04 1.26 7.01 -2.39 -0.02 1.25 16 28 H 0.07 1.89 7.93 -2.38 -0.02 1.87 16 29 H 0.09 2.04 8.10 -2.39 -0.02 2.02 16 30 H 0.08 2.08 6.95 -2.39 -0.02 2.06 16 31 H 0.02 0.82 6.67 -2.39 -0.02 0.80 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.03 1.46 7.16 -2.39 -0.02 1.45 16 36 H 0.31 14.40 7.56 -89.69 -0.68 13.72 16 37 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.02 0.95 6.87 -2.39 -0.02 0.93 16 39 H 0.05 2.27 7.70 -2.39 -0.02 2.25 16 Total: -1.00 -62.20 296.00 -0.71 -62.91 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.32 Total: 18.11 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 3.58 Total: -17.31 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -6.64 Total: -110.34 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -62.20 -0.71 -62.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219513844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.843 kcal (2) G-P(sol) polarization free energy of solvation -62.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds