Wall clock time and date at job start Mon Mar 30 2020 03:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47251 * 2 1 4 4 C 1.53006 * 109.46811 * 119.99804 * 2 1 3 5 5 N 1.46898 * 109.47006 * 64.99980 * 4 2 1 6 6 C 1.44253 * 110.99945 * 66.04581 * 5 4 2 7 7 C 1.54258 * 108.64280 * 219.84906 * 6 5 4 8 8 C 1.46131 * 111.90232 * 281.37587 * 7 6 5 9 9 N 1.48110 * 112.18732 * 60.86910 * 8 7 6 10 10 C 1.44262 * 109.98750 * 279.71624 * 9 8 7 11 11 H 1.08998 * 108.86460 * 333.10946 * 10 9 8 12 12 C 1.50696 * 108.86480 * 214.58644 * 10 9 8 13 13 H 1.08000 * 120.00060 * 239.99741 * 12 10 9 14 14 C 1.37883 * 119.99928 * 60.00194 * 12 10 9 15 15 N 1.31511 * 119.99548 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 119.99791 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47377 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47052 * 120.00009 * 16 14 12 19 19 H 1.48505 * 109.47088 * 239.99592 * 16 14 12 20 20 C 1.48195 * 111.00026 * 194.28556 * 5 4 2 21 21 H 1.09009 * 109.47170 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47273 * 300.00044 * 1 2 3 23 23 H 1.09002 * 109.46911 * 60.00115 * 1 2 3 24 24 H 1.08997 * 109.46828 * 239.99768 * 2 1 3 25 25 H 1.08995 * 109.47070 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47069 * 299.99788 * 3 2 1 27 27 H 1.09001 * 109.47018 * 59.99799 * 3 2 1 28 28 H 1.09001 * 109.47002 * 184.99763 * 4 2 1 29 29 H 1.08993 * 109.46955 * 305.00200 * 4 2 1 30 30 H 1.09003 * 109.61270 * 339.59540 * 6 5 4 31 31 H 1.09006 * 109.61305 * 99.93511 * 6 5 4 32 32 H 1.09003 * 108.99395 * 42.00601 * 7 6 5 33 33 H 1.08999 * 108.99125 * 160.83694 * 7 6 5 34 34 H 1.09000 * 108.94196 * 181.55945 * 8 7 6 35 35 H 1.08996 * 108.94651 * 300.17305 * 8 7 6 36 36 H 1.00907 * 110.99874 * 42.95124 * 9 8 7 37 37 H 0.97006 * 119.99377 * 180.02562 * 15 14 12 38 38 H 1.08995 * 108.82578 * 312.54049 * 20 5 4 39 39 H 1.09001 * 108.82217 * 70.83790 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6513 -2.1367 1.1905 6 6 2.3217 -2.8122 0.1065 7 6 1.3251 -3.7814 -0.5620 8 6 1.1611 -5.0120 0.2088 9 7 0.6339 -4.7542 1.5687 10 6 1.7012 -4.3218 2.4375 11 1 2.6425 -4.7299 2.0695 12 6 1.4479 -4.8560 3.8236 13 1 1.3309 -4.1734 4.6524 14 6 1.3655 -6.2162 4.0338 15 7 1.5076 -7.0472 3.0245 16 14 1.0522 -6.8784 5.7522 17 1 0.9307 -5.7457 6.7047 18 1 -0.2062 -7.6669 5.7569 19 1 2.1835 -7.7492 6.1610 20 6 1.8184 -2.7886 2.5108 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1263 -0.6444 1.2953 29 1 1.6053 -0.2617 2.1370 30 1 2.6657 -2.0800 -0.6239 31 1 3.1740 -3.3701 0.4945 32 1 0.3574 -3.2881 -0.6532 33 1 1.6896 -4.0339 -1.5578 34 1 0.4713 -5.6708 -0.3189 35 1 2.1277 -5.5087 0.2925 36 1 -0.1110 -4.0739 1.5447 37 1 1.4493 -8.0042 3.1724 38 1 2.7992 -2.5295 2.9094 39 1 1.0542 -2.4096 3.1894 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219513952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:33 Heat of formation + Delta-G solvation = -0.316496 kcal Electronic energy + Delta-G solvation = -16855.771075 eV Core-core repulsion = 14411.906806 eV Total energy + Delta-G solvation = -2443.864269 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.82788 -36.05913 -33.19843 -32.80670 -30.85408 -27.21215 -26.98610 -25.24556 -24.97712 -22.66711 -20.31557 -19.66948 -18.94721 -16.64421 -15.58440 -15.15065 -14.61643 -14.33717 -13.87654 -13.85156 -13.19900 -13.08055 -12.67195 -12.33374 -12.18202 -11.98141 -11.78002 -11.44547 -10.97264 -10.85671 -10.83202 -10.78411 -10.58009 -10.43377 -10.18379 -10.11101 -9.92373 -9.40523 -8.85968 -8.29085 -7.59836 -6.65842 -5.76973 -3.88969 3.38824 3.46978 3.49930 4.35098 4.59384 4.95478 5.08577 5.29689 5.43503 5.48543 5.56656 5.65352 5.76956 5.79176 5.83603 5.93426 5.98042 6.08755 6.11422 6.20426 6.27516 6.30198 6.38286 6.49256 6.57500 6.63328 6.74092 6.82414 6.90237 7.08344 7.45501 7.64903 7.82522 8.02898 8.43006 8.83722 8.97086 9.36164 9.78407 11.28101 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040240 B = 0.007211 C = 0.006540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.661171 B = 3881.888564 C = 4280.394425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.067 3.933 5 N -0.553 5.553 6 C 0.064 3.936 7 C -0.140 4.140 8 C 0.059 3.941 9 N -0.625 5.625 10 C 0.220 3.780 11 H 0.025 0.975 12 C -0.523 4.523 13 H 0.050 0.950 14 C 0.084 3.916 15 N -0.855 5.855 16 Si 0.883 3.117 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.288 1.288 20 C 0.039 3.961 21 H 0.069 0.931 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.023 0.977 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.315 0.685 37 H 0.253 0.747 38 H 0.018 0.982 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 11.668 -7.052 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.061 4.061 5 N -0.278 5.278 6 C -0.064 4.064 7 C -0.180 4.180 8 C -0.071 4.071 9 N -0.252 5.252 10 C 0.111 3.889 11 H 0.043 0.957 12 C -0.563 4.563 13 H 0.069 0.931 14 C -0.121 4.121 15 N -0.491 5.491 16 Si 0.711 3.289 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.214 1.214 20 C -0.089 4.089 21 H 0.088 0.912 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.181 10.751 -6.993 12.826 hybrid contribution 0.888 0.547 0.783 1.304 sum 1.069 11.298 -6.210 12.936 Atomic orbital electron populations 1.21692 0.94621 1.02728 1.00204 1.21188 0.96843 0.94972 0.98335 1.21820 1.00567 0.96452 1.01515 1.22065 0.96930 0.89273 0.97852 1.60571 1.60084 1.01248 1.05851 1.21796 0.95429 0.96202 0.93006 1.21390 0.99651 0.98366 0.98605 1.20840 1.00046 0.94536 0.91655 1.61258 1.10816 1.48295 1.04866 1.18968 0.91557 0.84700 0.93701 0.95710 1.21010 1.51709 0.91585 0.91985 0.93147 1.24866 0.94435 0.97065 0.95738 1.70065 1.47634 1.01854 1.29537 0.86728 0.77670 0.78927 0.85587 1.20036 1.21124 1.21399 1.23446 0.98586 0.99740 0.87111 0.91208 0.93356 0.93996 0.91351 0.93141 0.92869 0.92797 0.95860 0.91403 0.92457 0.94430 0.92028 0.93336 0.93400 0.92468 0.86837 0.93747 0.96369 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.08 37.16 0.34 -1.35 16 2 C -0.09 -1.18 2.83 -90.62 -0.26 -1.43 16 3 C -0.15 -1.51 9.19 37.16 0.34 -1.17 16 4 C 0.07 0.99 4.23 -3.82 -0.02 0.97 16 5 N -0.55 -9.64 3.47 -234.26 -0.81 -10.46 16 6 C 0.06 1.10 5.09 -4.58 -0.02 1.07 16 7 C -0.14 -2.40 5.50 -29.33 -0.16 -2.56 16 8 C 0.06 1.24 5.95 -6.42 -0.04 1.20 16 9 N -0.63 -14.93 5.68 -111.91 -0.64 -15.56 16 10 C 0.22 5.46 1.79 -69.79 -0.12 5.34 16 11 H 0.03 0.69 6.55 -51.93 -0.34 0.35 16 12 C -0.52 -14.52 8.62 -34.44 -0.30 -14.81 16 13 H 0.05 1.39 7.66 -52.49 -0.40 0.99 16 14 C 0.08 2.38 5.38 -17.82 -0.10 2.29 16 15 N -0.86 -25.04 12.74 55.43 0.71 -24.33 16 16 Si 0.88 21.62 29.54 -169.99 -5.02 16.60 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 C 0.04 0.82 4.75 -2.62 -0.01 0.81 16 21 H 0.07 1.00 7.75 -51.92 -0.40 0.60 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.88 6.25 -51.93 -0.32 0.55 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.35 8.12 -51.93 -0.42 -0.08 16 29 H 0.07 1.01 8.02 -51.93 -0.42 0.59 16 30 H 0.06 0.86 5.82 -51.93 -0.30 0.56 16 31 H 0.04 0.72 6.98 -51.93 -0.36 0.36 16 32 H 0.06 1.05 8.12 -51.93 -0.42 0.62 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.31 7.38 -51.93 -0.38 0.93 16 36 H 0.31 7.22 8.18 -39.29 -0.32 6.90 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.02 0.38 8.04 -51.93 -0.42 -0.04 16 39 H 0.06 1.38 7.91 -51.93 -0.41 0.97 16 LS Contribution 297.25 15.07 4.48 4.48 Total: -1.00 -28.31 297.25 -8.65 -36.96 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.02 Total: 1.95 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -0.35 Total: -9.64 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.74 Total: -50.35 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.31 -8.65 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219513952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.643 kcal (2) G-P(sol) polarization free energy of solvation -28.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds