Wall clock time and date at job start Mon Mar 30 2020 03:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47010 * 2 1 4 4 C 1.52993 * 109.47358 * 119.99915 * 2 1 3 5 5 N 1.46895 * 109.47468 * 176.97691 * 4 2 1 6 6 C 1.44185 * 111.00161 * 171.34537 * 5 4 2 7 7 C 1.54319 * 112.61028 * 217.53097 * 6 5 4 8 8 C 1.54322 * 111.72355 * 318.91963 * 7 6 5 9 9 N 1.44180 * 112.61710 * 318.91922 * 8 7 6 10 10 C 1.48087 * 109.91515 * 94.34243 * 9 8 7 11 11 H 1.09007 * 108.94653 * 40.35182 * 10 9 8 12 12 C 1.50699 * 108.94916 * 158.97921 * 10 9 8 13 13 H 1.08006 * 119.99818 * 122.62791 * 12 10 9 14 14 C 1.37876 * 120.00135 * 302.63222 * 12 10 9 15 15 N 1.31513 * 119.99784 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00028 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47220 * 89.99650 * 16 14 12 18 18 H 1.48504 * 109.47005 * 209.99873 * 16 14 12 19 19 H 1.48503 * 109.47059 * 329.99437 * 16 14 12 20 20 C 1.46093 * 112.14304 * 279.66741 * 10 9 8 21 21 H 1.08996 * 109.47103 * 299.99996 * 1 2 3 22 22 H 1.09002 * 109.47071 * 59.99766 * 1 2 3 23 23 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47282 * 240.00573 * 2 1 3 25 25 H 1.09004 * 109.47193 * 305.01414 * 3 2 1 26 26 H 1.08995 * 109.47145 * 65.01851 * 3 2 1 27 27 H 1.09002 * 109.47165 * 185.01802 * 3 2 1 28 28 H 1.09008 * 109.47111 * 56.97958 * 4 2 1 29 29 H 1.09004 * 109.47366 * 296.98385 * 4 2 1 30 30 H 1.08995 * 108.85138 * 338.33635 * 6 5 4 31 31 H 1.08995 * 108.85361 * 96.72113 * 6 5 4 32 32 H 1.09000 * 109.03112 * 79.50378 * 7 6 5 33 33 H 1.09003 * 109.02492 * 198.42310 * 7 6 5 34 34 H 1.08999 * 108.84855 * 79.73310 * 8 7 6 35 35 H 1.09000 * 108.85192 * 198.21540 * 8 7 6 36 36 H 1.00889 * 111.00216 * 331.15632 * 9 8 7 37 37 H 0.97005 * 120.00025 * 180.02562 * 15 14 12 38 38 H 1.09000 * 108.94205 * 181.37539 * 20 10 9 39 39 H 1.09000 * 108.94471 * 299.99366 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5072 -0.7848 1.2132 6 6 4.0339 -1.2752 2.4626 7 6 5.3434 -0.5690 2.8724 8 6 6.2792 -0.3549 1.6641 9 7 6.3134 -1.4938 0.7806 10 6 5.3355 -1.3109 -0.3163 11 1 5.3632 -0.2721 -0.6455 12 6 5.7236 -2.1982 -1.4709 13 1 5.0238 -2.9285 -1.8496 14 6 6.9719 -2.0777 -2.0438 15 7 7.8238 -1.1881 -1.5829 16 14 7.4531 -3.1781 -3.4745 17 1 7.0767 -2.5217 -4.7522 18 1 8.9199 -3.4090 -3.4498 19 1 6.7454 -4.4785 -3.3587 20 6 3.9742 -1.6407 0.0988 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 1.6051 1.9817 -0.8417 26 1 1.7519 1.9297 0.9315 27 1 3.1263 1.4439 -0.0899 28 1 1.6332 -1.7321 1.2767 29 1 1.7216 -0.1771 2.1384 30 1 3.2901 -1.1190 3.2439 31 1 4.2245 -2.3443 2.3691 32 1 5.1028 0.3991 3.3116 33 1 5.8581 -1.1781 3.6156 34 1 5.9375 0.5154 1.1039 35 1 7.2882 -0.1641 2.0295 36 1 6.1344 -2.3487 1.2856 37 1 8.7019 -1.1030 -1.9861 38 1 3.3041 -1.5119 -0.7511 39 1 3.9438 -2.6830 0.4164 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219514018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:35 Heat of formation + Delta-G solvation = 2.456478 kcal Electronic energy + Delta-G solvation = -16955.361371 eV Core-core repulsion = 14511.617347 eV Total energy + Delta-G solvation = -2443.744024 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.91933 -35.90177 -33.45095 -32.51257 -30.92689 -27.40415 -26.85924 -25.22480 -24.82707 -22.76300 -20.34298 -19.43775 -19.10277 -16.53777 -15.66348 -14.87313 -14.67277 -14.40197 -13.94067 -13.73100 -13.46827 -13.04875 -12.42241 -12.37900 -12.12774 -11.94357 -11.66080 -11.32772 -10.99817 -10.86800 -10.75938 -10.66229 -10.53822 -10.45959 -10.35125 -9.95182 -9.83293 -9.44851 -8.78869 -8.28096 -7.71932 -6.67018 -5.75297 -3.89770 3.39018 3.46170 3.48221 4.36468 4.61002 5.04363 5.19081 5.30629 5.42621 5.46085 5.62766 5.68577 5.78775 5.81693 5.88423 5.95418 5.99998 6.08255 6.16901 6.19148 6.21844 6.34702 6.37396 6.49283 6.59073 6.69777 6.74945 6.83869 7.09047 7.18659 7.44083 7.71650 7.81563 8.02639 8.40373 8.74681 9.06676 9.27634 9.78270 11.28859 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.008899 C = 0.007351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.599229 B = 3145.561328 C = 3808.347825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.133 4.133 4 C 0.065 3.935 5 N -0.534 5.534 6 C 0.060 3.940 7 C -0.145 4.145 8 C 0.075 3.925 9 N -0.634 5.634 10 C 0.217 3.783 11 H 0.039 0.961 12 C -0.535 4.535 13 H 0.049 0.951 14 C 0.087 3.913 15 N -0.844 5.844 16 Si 0.879 3.121 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.041 3.959 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.306 0.694 37 H 0.253 0.747 38 H 0.066 0.934 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 2.174 6.285 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.190 4.190 4 C -0.063 4.063 5 N -0.257 5.257 6 C -0.069 4.069 7 C -0.185 4.185 8 C -0.057 4.057 9 N -0.260 5.260 10 C 0.109 3.891 11 H 0.057 0.943 12 C -0.575 4.575 13 H 0.067 0.933 14 C -0.119 4.119 15 N -0.478 5.478 16 Si 0.707 3.293 17 H -0.210 1.210 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.087 4.087 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.094 0.906 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.123 0.877 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.439 2.983 5.822 11.484 hybrid contribution -0.855 -1.627 -0.050 1.838 sum -10.294 1.356 5.772 11.879 Atomic orbital electron populations 1.21812 0.95818 1.01174 1.01400 1.21178 0.94336 0.97497 0.98550 1.21656 1.02677 0.94653 1.00030 1.22171 0.88377 0.97816 0.97932 1.61645 1.07224 1.53074 1.03796 1.21811 0.96565 0.97046 0.91521 1.22799 0.95973 0.99674 1.00098 1.21620 0.95583 0.96835 0.91697 1.61155 1.53536 1.01179 1.10163 1.18108 0.83485 0.98128 0.89371 0.94313 1.20926 1.00140 1.21354 1.15068 0.93309 1.24880 0.96480 0.94763 0.95803 1.70105 1.06035 1.32827 1.38876 0.86851 0.77637 0.81399 0.83395 1.20957 1.21377 1.20213 1.22151 1.01430 0.92708 0.92364 0.93085 0.92731 0.93177 0.90573 0.93878 0.93697 0.91111 0.95873 0.91802 0.93207 0.95015 0.92898 0.93046 0.92400 0.93948 0.87737 0.93706 0.91578 0.96018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 2 C -0.10 -1.38 2.85 -90.62 -0.26 -1.64 16 3 C -0.13 -1.91 9.00 37.16 0.33 -1.57 16 4 C 0.07 0.97 4.17 -3.83 -0.02 0.96 16 5 N -0.53 -9.45 3.72 -239.09 -0.89 -10.34 16 6 C 0.06 1.00 5.15 -4.58 -0.02 0.97 16 7 C -0.14 -2.45 6.21 -25.35 -0.16 -2.61 16 8 C 0.07 1.56 6.11 -4.58 -0.03 1.53 16 9 N -0.63 -15.14 5.57 -111.81 -0.62 -15.76 16 10 C 0.22 5.36 2.03 -71.49 -0.14 5.21 16 11 H 0.04 1.08 7.37 -51.93 -0.38 0.70 16 12 C -0.54 -14.72 8.70 -34.44 -0.30 -15.02 16 13 H 0.05 1.33 7.72 -52.48 -0.40 0.92 16 14 C 0.09 2.46 5.37 -17.82 -0.10 2.36 16 15 N -0.84 -24.73 12.63 55.43 0.70 -24.03 16 16 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.04 0.86 3.96 -6.45 -0.03 0.83 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 1.22 6.14 -51.93 -0.32 0.91 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.20 7.84 -51.93 -0.41 0.80 16 28 H 0.02 0.34 8.12 -51.92 -0.42 -0.08 16 29 H 0.06 0.88 7.80 -51.93 -0.40 0.48 16 30 H 0.05 0.73 7.38 -51.93 -0.38 0.35 16 31 H 0.03 0.55 6.67 -51.93 -0.35 0.21 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.31 7.17 -51.93 -0.37 0.94 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.31 7.04 7.56 -39.30 -0.30 6.74 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.07 1.37 5.76 -51.93 -0.30 1.08 16 39 H 0.02 0.46 7.37 -51.93 -0.38 0.08 16 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -28.33 295.86 -8.69 -37.01 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.94 Total: 2.51 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -0.37 Total: -10.29 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.81 Total: -50.12 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.33 -8.69 -37.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219514018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.468 kcal (2) G-P(sol) polarization free energy of solvation -28.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds