Wall clock time and date at job start Mon Mar 30 2020 03:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47043 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99925 * 2 1 3 5 5 N 1.46901 * 109.47461 * 119.99502 * 2 1 3 6 6 C 1.48066 * 110.99670 * 66.05944 * 5 2 1 7 7 C 1.53702 * 112.47095 * 192.19360 * 6 5 2 8 8 C 1.50808 * 112.09169 * 318.55966 * 7 6 5 9 9 N 1.47903 * 108.49132 * 92.55924 * 8 7 6 10 10 C 1.40023 * 114.07312 * 280.04851 * 9 8 7 11 11 H 1.08999 * 108.95765 * 301.23227 * 10 9 8 12 12 C 1.50694 * 108.96146 * 182.47519 * 10 9 8 13 13 H 1.07999 * 120.00083 * 239.99982 * 12 10 9 14 14 C 1.37879 * 120.00190 * 60.00261 * 12 10 9 15 15 N 1.31507 * 120.00165 * 179.97438 * 14 12 10 16 16 Si 1.86807 * 119.99678 * 359.97438 * 14 12 10 17 17 H 1.48497 * 109.47139 * 269.99681 * 16 14 12 18 18 H 1.48496 * 109.47150 * 30.00170 * 16 14 12 19 19 H 1.48502 * 109.46766 * 150.00089 * 16 14 12 20 20 C 1.44578 * 111.00304 * 298.36543 * 5 2 1 21 21 H 1.08998 * 109.46979 * 297.04975 * 1 2 3 22 22 H 1.08998 * 109.47179 * 57.05258 * 1 2 3 23 23 H 1.09006 * 109.46682 * 177.05760 * 1 2 3 24 24 H 1.09001 * 109.47054 * 172.63241 * 3 2 1 25 25 H 1.09003 * 109.47137 * 292.63120 * 3 2 1 26 26 H 1.08996 * 109.47358 * 52.63037 * 3 2 1 27 27 H 1.09001 * 109.47185 * 300.00201 * 4 2 1 28 28 H 1.09000 * 109.47139 * 59.99314 * 4 2 1 29 29 H 1.08993 * 109.47672 * 179.97438 * 4 2 1 30 30 H 1.09002 * 108.88356 * 71.42512 * 6 5 2 31 31 H 1.09002 * 108.80794 * 312.91303 * 6 5 2 32 32 H 1.08992 * 108.95914 * 197.88241 * 7 6 5 33 33 H 1.08999 * 108.95404 * 79.22538 * 7 6 5 34 34 H 1.09000 * 109.63359 * 332.85521 * 8 7 6 35 35 H 1.08999 * 109.79555 * 212.35160 * 8 7 6 36 36 H 1.00900 * 111.00575 * 46.34938 * 9 8 7 37 37 H 0.97003 * 120.00345 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.57223 * 100.52825 * 20 5 2 39 39 H 1.09003 * 109.56800 * 340.16150 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0197 -0.6924 1.1995 6 6 1.6678 -2.1301 1.1630 7 6 1.8920 -2.8243 2.5159 8 6 3.1740 -2.3813 3.1751 9 7 2.8713 -1.2464 4.0740 10 6 2.7474 -0.0155 3.4181 11 1 3.6776 0.2009 2.8926 12 6 2.5015 1.0624 4.4420 13 1 1.5973 1.6515 4.3995 14 6 3.4309 1.2967 5.4332 15 7 3.2165 2.2378 6.3264 16 14 4.9946 0.2774 5.5071 17 1 4.7639 -0.9223 6.3513 18 1 5.3737 -0.1477 4.1358 19 1 6.0892 1.0921 6.0932 20 6 1.5879 -0.0149 2.4015 21 1 -0.3633 0.4673 0.9152 22 1 -0.3633 0.5589 -0.8624 23 1 -0.3633 -1.0264 -0.0528 24 1 3.1220 1.4454 0.1318 25 1 1.7882 1.9169 -0.9486 26 1 1.5730 1.9930 0.8167 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7208 -1.2494 30 1 2.2790 -2.6239 0.4076 31 1 0.6181 -2.2280 0.8860 32 1 1.9287 -3.9023 2.3590 33 1 1.0560 -2.5924 3.1757 34 1 3.8872 -2.0654 2.4138 35 1 3.5954 -3.2038 3.7530 36 1 2.0573 -1.4390 4.6382 37 1 3.8701 2.4024 7.0240 38 1 0.7297 -0.5358 2.8260 39 1 1.3123 1.0123 2.1626 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219514276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:38 Heat of formation + Delta-G solvation = 10.431221 kcal Electronic energy + Delta-G solvation = -17343.886508 eV Core-core repulsion = 14900.488295 eV Total energy + Delta-G solvation = -2443.398213 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.52510 -36.47028 -33.18135 -31.57364 -31.16253 -27.62781 -27.13373 -26.54424 -24.68800 -23.44350 -20.49456 -19.89728 -18.19590 -16.87177 -15.99580 -14.82969 -14.70670 -14.41262 -14.05944 -13.78574 -13.60562 -13.05593 -12.72332 -12.37203 -12.06127 -12.02458 -11.77008 -11.60568 -11.37002 -11.19819 -10.94305 -10.71398 -10.65451 -10.42370 -10.27114 -10.24174 -9.72732 -9.52373 -8.90131 -8.43195 -7.73638 -7.03765 -5.91985 -4.00948 3.65103 3.67892 3.83877 4.25260 4.74418 5.02975 5.11874 5.14278 5.29118 5.36308 5.38132 5.59146 5.66854 5.69434 5.81632 5.86738 5.90526 5.98134 6.06593 6.10498 6.15034 6.18045 6.25170 6.29194 6.36726 6.44007 6.61586 6.62559 6.72947 6.80533 7.16286 7.65275 7.81878 7.86750 8.34791 8.65986 8.84409 9.10934 9.73600 11.17531 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031116 B = 0.010021 C = 0.008693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.640856 B = 2793.531043 C = 3220.101882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.137 4.137 5 N -0.537 5.537 6 C 0.063 3.937 7 C -0.150 4.150 8 C 0.062 3.938 9 N -0.684 5.684 10 C 0.200 3.800 11 H 0.045 0.955 12 C -0.522 4.522 13 H 0.067 0.933 14 C 0.080 3.920 15 N -0.905 5.905 16 Si 0.934 3.066 17 H -0.283 1.283 18 H -0.270 1.270 19 H -0.321 1.321 20 C 0.038 3.962 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.026 0.974 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.335 0.665 37 H 0.261 0.739 38 H 0.023 0.977 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.308 -7.984 -12.634 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.016 3.984 3 C -0.197 4.197 4 C -0.195 4.195 5 N -0.261 5.261 6 C -0.064 4.064 7 C -0.189 4.189 8 C -0.067 4.067 9 N -0.315 5.315 10 C 0.089 3.911 11 H 0.062 0.938 12 C -0.561 4.561 13 H 0.085 0.915 14 C -0.123 4.123 15 N -0.543 5.543 16 Si 0.766 3.234 17 H -0.209 1.209 18 H -0.196 1.196 19 H -0.251 1.251 20 C -0.092 4.092 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.155 0.845 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.121 -7.769 -12.359 14.751 hybrid contribution -1.122 -0.694 -0.240 1.341 sum -3.243 -8.462 -12.598 15.519 Atomic orbital electron populations 1.22492 0.97778 1.01340 1.02091 1.21033 0.91799 0.94766 0.90845 1.21917 1.02472 0.94245 1.01051 1.21884 1.01779 0.99680 0.96126 1.61168 1.61750 1.01026 1.02204 1.22348 0.97830 0.88985 0.97282 1.22177 1.00482 0.99331 0.96927 1.21685 0.95638 0.93969 0.95386 1.58480 1.44616 1.02566 1.25829 1.18557 0.93747 0.87271 0.91508 0.93769 1.20990 1.07129 1.16297 1.11636 0.91535 1.25021 0.98809 0.94084 0.94416 1.69968 1.36366 1.32056 1.15908 0.85882 0.80468 0.78626 0.78383 1.20921 1.19559 1.25100 1.22924 0.98574 0.97690 0.89995 0.92306 0.92652 0.93026 0.91553 0.93022 0.91831 0.93037 0.92875 0.91949 0.91698 0.95571 0.92189 0.92438 0.90863 0.92584 0.84459 0.92931 0.95904 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 7.98 37.16 0.30 -2.10 16 2 C 0.11 1.52 0.68 -131.60 -0.09 1.43 16 3 C -0.14 -2.08 8.15 37.16 0.30 -1.77 16 4 C -0.14 -1.69 8.05 37.16 0.30 -1.39 16 5 N -0.54 -9.05 3.76 -218.65 -0.82 -9.87 16 6 C 0.06 0.93 4.40 -2.82 -0.01 0.92 16 7 C -0.15 -2.25 5.35 -27.47 -0.15 -2.40 16 8 C 0.06 1.11 6.28 -4.37 -0.03 1.08 16 9 N -0.68 -14.77 3.56 -112.23 -0.40 -15.17 16 10 C 0.20 4.66 1.58 -71.79 -0.11 4.54 16 11 H 0.04 1.14 7.02 -51.93 -0.36 0.77 16 12 C -0.52 -14.56 9.08 -34.44 -0.31 -14.87 16 13 H 0.07 2.01 7.96 -52.49 -0.42 1.59 16 14 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 15 N -0.91 -28.09 13.96 55.43 0.77 -27.32 16 16 Si 0.93 24.29 26.05 -169.99 -4.43 19.87 16 17 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.27 -6.95 6.50 56.52 0.37 -6.58 16 19 H -0.32 -8.48 7.11 56.52 0.40 -8.07 16 20 C 0.04 0.75 3.28 -4.44 -0.01 0.73 16 21 H 0.06 0.88 6.90 -51.93 -0.36 0.52 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.67 6.44 -51.93 -0.33 0.33 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.04 6.24 -51.93 -0.32 0.72 16 27 H 0.05 0.60 6.58 -51.93 -0.34 0.26 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.89 6.93 -51.93 -0.36 0.53 16 31 H 0.03 0.37 6.03 -51.93 -0.31 0.06 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.91 6.79 -51.93 -0.35 0.56 16 34 H 0.07 1.38 7.57 -51.93 -0.39 0.99 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.33 7.15 8.06 -39.29 -0.32 6.83 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.02 0.46 6.93 -51.93 -0.36 0.10 16 39 H 0.07 1.50 4.85 -51.93 -0.25 1.25 16 LS Contribution 281.97 15.07 4.25 4.25 Total: -1.00 -29.92 281.97 -7.16 -37.08 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.62 Total: 2.75 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.45 Total: -52.36 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.43 Total: 19.87 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.92 -7.16 -37.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219514276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.514 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds