Wall clock time and date at job start Mon Mar 30 2020 03:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46946 * 2 1 4 4 C 1.52995 * 109.47615 * 239.99625 * 2 1 3 5 5 N 1.46909 * 109.46754 * 119.99707 * 2 1 3 6 6 C 1.48069 * 110.99902 * 298.29566 * 5 2 1 7 7 C 1.50740 * 112.93909 * 84.35118 * 6 5 2 8 8 C 1.54514 * 108.95258 * 92.65156 * 7 6 5 9 9 N 1.40084 * 111.49924 * 284.00065 * 8 7 6 10 10 C 1.47690 * 114.57599 * 61.44468 * 9 8 7 11 11 H 1.08999 * 109.73480 * 38.32299 * 10 9 8 12 12 C 1.50705 * 109.73713 * 158.97731 * 10 9 8 13 13 H 1.07997 * 119.99721 * 119.99917 * 12 10 9 14 14 C 1.37876 * 119.99991 * 299.99958 * 12 10 9 15 15 N 1.31512 * 120.00227 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99897 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47337 * 89.99955 * 16 14 12 18 18 H 1.48501 * 109.47156 * 210.00165 * 16 14 12 19 19 H 1.48509 * 109.47142 * 329.99912 * 16 14 12 20 20 C 1.47742 * 111.00088 * 65.89490 * 5 2 1 21 21 H 1.08992 * 109.47482 * 306.48094 * 1 2 3 22 22 H 1.08997 * 109.46512 * 66.48299 * 1 2 3 23 23 H 1.08998 * 109.46761 * 186.47847 * 1 2 3 24 24 H 1.09005 * 109.46918 * 173.61587 * 3 2 1 25 25 H 1.08997 * 109.46973 * 293.61624 * 3 2 1 26 26 H 1.09001 * 109.46857 * 53.61808 * 3 2 1 27 27 H 1.09002 * 109.47165 * 300.00443 * 4 2 1 28 28 H 1.09008 * 109.46920 * 59.99929 * 4 2 1 29 29 H 1.08997 * 109.47357 * 179.97438 * 4 2 1 30 30 H 1.09000 * 108.78575 * 205.24466 * 6 5 2 31 31 H 1.09003 * 108.79137 * 323.57215 * 6 5 2 32 32 H 1.08998 * 109.56156 * 332.80628 * 7 6 5 33 33 H 1.09006 * 109.55812 * 212.48855 * 7 6 5 34 34 H 1.08998 * 109.07587 * 163.48375 * 8 7 6 35 35 H 1.08998 * 109.07460 * 44.51997 * 8 7 6 36 36 H 1.00904 * 111.00345 * 188.14828 * 9 8 7 37 37 H 0.97002 * 120.00037 * 179.97438 * 15 14 12 38 38 H 1.08998 * 108.99432 * 72.18201 * 20 5 2 39 39 H 1.09007 * 108.92628 * 313.39545 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0196 -0.6925 1.1996 6 6 1.5787 0.0024 2.4305 7 6 0.1925 -0.3981 2.8667 8 6 0.3008 -1.5647 3.8742 9 7 0.5905 -2.7743 3.2298 10 6 1.8756 -2.7903 2.5022 11 1 2.6273 -2.2427 3.0708 12 6 2.3279 -4.2134 2.2993 13 1 2.4729 -4.5967 1.3001 14 6 2.5567 -5.0262 3.3893 15 7 2.3797 -4.5597 4.6061 16 14 3.1180 -6.7900 3.1377 17 1 4.6018 -6.8372 3.1042 18 1 2.6211 -7.6318 4.2556 19 1 2.5772 -7.3032 1.8534 20 6 1.6650 -2.1263 1.1651 21 1 -0.3634 0.6109 0.8262 22 1 -0.3632 0.4101 -0.9423 23 1 -0.3633 -1.0211 0.1160 24 1 3.1241 1.4447 0.1143 25 1 1.7730 1.9223 -0.9416 26 1 1.5864 1.9883 0.8274 27 1 1.6768 -1.7490 -1.2491 28 1 1.6768 -0.2075 -2.1392 29 1 3.1301 -0.7209 -1.2493 30 1 2.2794 -0.2271 3.2333 31 1 1.5915 1.0774 2.2506 32 1 -0.3850 -0.7176 1.9992 33 1 -0.2998 0.4502 3.3424 34 1 -0.6443 -1.6630 4.4082 35 1 1.0921 -1.3443 4.5906 36 1 0.5290 -3.5500 3.8721 37 1 2.5403 -5.1316 5.3729 38 1 2.2826 -2.6267 0.4193 39 1 0.6171 -2.2246 0.8812 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219514340.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:40 Heat of formation + Delta-G solvation = 10.946744 kcal Electronic energy + Delta-G solvation = -17342.184861 eV Core-core repulsion = 14898.809003 eV Total energy + Delta-G solvation = -2443.375858 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.40998 -35.99297 -33.03496 -31.42238 -30.87379 -27.52410 -27.18617 -26.50027 -24.39501 -23.47987 -20.11672 -19.52859 -17.87700 -16.86880 -15.37573 -15.24189 -14.50499 -14.45219 -13.95981 -13.64630 -13.24073 -13.07979 -12.40143 -12.10311 -11.90492 -11.80106 -11.62945 -11.40345 -11.30072 -11.06207 -10.94293 -10.84174 -10.53629 -10.40474 -10.21707 -9.86090 -9.45959 -9.40841 -9.04691 -8.63727 -7.39240 -6.78103 -6.10010 -4.14546 3.29110 3.35868 3.39610 4.36544 4.55210 5.11245 5.19106 5.28008 5.48130 5.54366 5.70024 5.82691 5.83227 5.88245 6.02327 6.02820 6.13376 6.15867 6.18549 6.29463 6.36219 6.44251 6.55566 6.56421 6.63904 6.71406 6.83561 6.91020 7.02075 7.14881 7.54593 7.83046 7.90746 8.03603 8.23344 8.82848 9.02412 9.28341 9.52423 10.98286 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.008794 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.166860 B = 3183.087524 C = 3665.632981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.102 3.898 3 C -0.137 4.137 4 C -0.138 4.138 5 N -0.536 5.536 6 C 0.058 3.942 7 C -0.161 4.161 8 C 0.089 3.911 9 N -0.705 5.705 10 C 0.222 3.778 11 H 0.012 0.988 12 C -0.507 4.507 13 H 0.061 0.939 14 C 0.063 3.937 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.072 3.928 21 H 0.058 0.942 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.041 0.959 35 H 0.003 0.997 36 H 0.363 0.637 37 H 0.263 0.737 38 H 0.064 0.936 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 8.825 -6.207 11.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.012 3.988 3 C -0.195 4.195 4 C -0.196 4.196 5 N -0.261 5.261 6 C -0.069 4.069 7 C -0.200 4.200 8 C -0.043 4.043 9 N -0.342 5.342 10 C 0.115 3.885 11 H 0.030 0.970 12 C -0.546 4.546 13 H 0.079 0.921 14 C -0.138 4.138 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.055 4.055 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.187 0.813 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.768 8.971 -6.551 11.448 hybrid contribution -0.059 -1.029 0.853 1.338 sum -2.827 7.942 -5.698 10.175 Atomic orbital electron populations 1.22707 0.97786 1.02443 1.01126 1.20997 0.92051 0.94014 0.91720 1.21918 1.01738 0.95120 1.00678 1.21873 1.01646 1.00513 0.95525 1.62436 1.59970 1.03450 1.00220 1.21905 0.95047 0.97126 0.92857 1.22440 0.98490 0.98117 1.00955 1.20628 0.97845 0.91974 0.93884 1.58083 1.36239 1.04391 1.35489 1.18700 0.86102 0.94727 0.88984 0.97040 1.21263 1.44018 0.96391 0.92918 0.92115 1.25039 0.94830 0.98818 0.95155 1.69798 1.49837 1.36459 0.97775 0.86497 0.78805 0.84293 0.77818 1.20699 1.21261 1.19797 1.22180 0.98243 0.84561 1.00496 0.92259 0.93354 0.91669 0.92002 0.92994 0.92851 0.92211 0.93183 0.92088 0.91499 0.92305 0.90214 0.92994 0.94091 0.97944 0.81255 0.92691 0.91770 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 6.77 37.16 0.25 -2.42 16 2 C 0.10 1.58 0.71 -131.59 -0.09 1.49 16 3 C -0.14 -1.82 8.10 37.16 0.30 -1.51 16 4 C -0.14 -2.01 8.07 37.16 0.30 -1.71 16 5 N -0.54 -10.10 4.60 -220.01 -1.01 -11.11 16 6 C 0.06 1.06 4.68 -4.31 -0.02 1.04 16 7 C -0.16 -2.90 4.59 -27.07 -0.12 -3.02 16 8 C 0.09 1.89 6.03 -6.55 -0.04 1.85 16 9 N -0.71 -17.05 5.91 -112.41 -0.66 -17.72 16 10 C 0.22 5.60 2.08 -69.54 -0.14 5.46 16 11 H 0.01 0.34 6.77 -51.93 -0.35 -0.01 16 12 C -0.51 -13.84 8.61 -34.44 -0.30 -14.13 16 13 H 0.06 1.64 7.46 -52.49 -0.39 1.25 16 14 C 0.06 1.72 5.14 -17.82 -0.09 1.63 16 15 N -0.90 -25.22 11.75 55.43 0.65 -24.57 16 16 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 C 0.07 1.56 3.60 -4.48 -0.02 1.54 16 21 H 0.06 0.86 6.03 -51.93 -0.31 0.55 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.06 1.08 5.49 -51.93 -0.29 0.79 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.69 6.25 -51.93 -0.32 0.36 16 27 H 0.06 0.93 6.60 -51.93 -0.34 0.59 16 28 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.38 6.52 -51.93 -0.34 1.04 16 31 H 0.06 0.93 5.46 -51.93 -0.28 0.65 16 32 H 0.08 1.47 4.11 -51.93 -0.21 1.26 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.00 0.06 7.60 -51.93 -0.39 -0.33 16 36 H 0.36 9.60 6.50 -39.29 -0.26 9.35 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.06 1.43 6.33 -51.93 -0.33 1.10 16 39 H 0.04 0.79 5.09 -51.93 -0.26 0.52 16 LS Contribution 277.02 15.07 4.17 4.17 Total: -1.00 -27.28 277.02 -8.03 -35.31 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.18 Total: 7.62 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 0.03 Total: -9.80 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -1.03 Total: -53.40 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.28 -8.03 -35.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219514340.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.254 kcal (2) G-P(sol) polarization free energy of solvation -27.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds