Wall clock time and date at job start Mon Mar 30 2020 03:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47236 * 2 1 4 4 C 1.53000 * 109.46725 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.46732 * 179.97438 * 4 3 2 6 6 C 1.40091 * 111.00157 * 66.96491 * 5 4 3 7 7 C 1.54515 * 111.51213 * 188.14635 * 6 5 4 8 8 C 1.50736 * 108.94511 * 283.99432 * 7 6 5 9 9 N 1.48069 * 112.93985 * 92.64990 * 8 7 6 10 10 C 1.47752 * 113.78696 * 318.28368 * 9 8 7 11 11 C 1.47689 * 111.00147 * 195.60887 * 5 4 3 12 12 H 1.08998 * 109.73294 * 271.63448 * 11 5 4 13 13 C 1.50694 * 109.73414 * 32.33769 * 11 5 4 14 14 H 1.08000 * 120.00246 * 56.49343 * 13 11 5 15 15 C 1.37877 * 120.00012 * 236.48539 * 13 11 5 16 16 N 1.31511 * 119.99961 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99972 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47029 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46778 * 120.00070 * 17 15 13 20 20 H 1.48490 * 109.47330 * 240.00157 * 17 15 13 21 21 H 1.08996 * 109.47286 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47021 * 300.00237 * 1 2 3 23 23 H 1.09001 * 109.47146 * 60.00031 * 1 2 3 24 24 H 1.08993 * 109.46810 * 239.99668 * 2 1 3 25 25 H 1.09001 * 109.47146 * 119.99969 * 2 1 3 26 26 H 1.08997 * 109.46777 * 60.00067 * 3 2 1 27 27 H 1.09001 * 109.47028 * 300.00041 * 3 2 1 28 28 H 1.08993 * 109.47339 * 299.99454 * 4 3 2 29 29 H 1.08993 * 109.47104 * 60.00298 * 4 3 2 30 30 H 1.08993 * 109.06985 * 308.67329 * 6 5 4 31 31 H 1.09002 * 109.06468 * 67.69470 * 6 5 4 32 32 H 1.09005 * 109.55525 * 43.83745 * 7 6 5 33 33 H 1.09004 * 109.55803 * 164.04297 * 7 6 5 34 34 H 1.08998 * 108.78962 * 213.53776 * 8 7 6 35 35 H 1.08996 * 108.79039 * 331.75794 * 8 7 6 36 36 H 1.00901 * 111.00064 * 84.34781 * 9 8 7 37 37 H 1.09005 * 108.99042 * 79.50223 * 10 9 8 38 38 H 1.08997 * 108.99238 * 198.32920 * 10 9 8 39 39 H 0.96999 * 120.00247 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8273 -0.0013 6 6 3.7451 3.4717 1.2022 7 6 4.0719 4.9805 1.1394 8 6 5.5627 5.1641 1.2663 9 7 6.2517 5.2133 -0.0433 10 6 5.7519 4.2209 -1.0173 11 6 5.4880 2.8836 -0.3729 12 1 6.1049 2.7768 0.5194 13 6 5.8043 1.7780 -1.3468 14 1 5.2527 1.6991 -2.2720 15 6 6.7980 0.8672 -1.0569 16 7 7.4694 0.9630 0.0698 17 14 7.1905 -0.5028 -2.2646 18 1 6.2997 -0.3904 -3.4474 19 1 8.6060 -0.3891 -2.6990 20 1 6.9784 -1.8175 -1.6077 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.9337 0.9285 0.8891 29 1 3.9329 0.9287 -0.8908 30 1 2.6819 3.3456 1.4063 31 1 4.3190 3.0173 2.0100 32 1 3.7338 5.3877 0.1864 33 1 3.5681 5.4974 1.9563 34 1 5.7576 6.0939 1.8007 35 1 5.9702 4.3363 1.8466 36 1 6.2261 6.1446 -0.4307 37 1 4.8262 4.5913 -1.4578 38 1 6.4935 4.0932 -1.8058 39 1 8.1683 0.3221 0.2740 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219514637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:12 Heat of formation + Delta-G solvation = -3.334587 kcal Electronic energy + Delta-G solvation = -16889.466014 eV Core-core repulsion = 14445.470871 eV Total energy + Delta-G solvation = -2443.995143 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.66430 -35.41695 -33.55992 -32.91863 -30.88629 -28.72729 -26.47090 -25.23332 -23.46904 -22.15607 -20.64149 -19.51334 -18.84136 -16.70135 -15.38408 -15.03940 -14.78805 -14.47839 -14.29432 -13.72149 -13.35683 -13.07563 -12.56116 -12.12470 -11.95259 -11.75089 -11.58515 -11.31384 -11.12425 -10.90798 -10.71857 -10.58389 -10.53042 -10.38444 -10.08474 -9.81857 -9.48761 -9.36679 -8.96109 -8.56915 -7.46921 -6.89061 -6.06731 -4.10070 3.26529 3.35432 3.39192 4.37421 4.94048 5.05798 5.27977 5.34642 5.44823 5.51546 5.54722 5.65818 5.89150 5.96358 6.13197 6.18595 6.22121 6.24913 6.31900 6.43055 6.46472 6.49626 6.63677 6.68567 6.74299 6.80116 6.87035 7.02088 7.19084 7.45682 7.67500 7.81990 7.90860 8.14634 8.26788 8.46465 8.92822 9.06829 9.53119 11.00888 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.014924 B = 0.013508 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.705725 B = 2072.331156 C = 3629.522938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.118 4.118 4 C 0.075 3.925 5 N -0.564 5.564 6 C 0.079 3.921 7 C -0.147 4.147 8 C 0.064 3.936 9 N -0.700 5.700 10 C 0.080 3.920 11 C 0.199 3.801 12 H 0.061 0.939 13 C -0.508 4.508 14 H 0.060 0.940 15 C 0.068 3.932 16 N -0.884 5.884 17 Si 0.891 3.109 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.284 1.284 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.016 0.984 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.007 0.993 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.322 0.678 37 H 0.018 0.982 38 H 0.068 0.932 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 2.794 1.337 9.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.052 4.052 5 N -0.289 5.289 6 C -0.051 4.051 7 C -0.187 4.187 8 C -0.066 4.066 9 N -0.329 5.329 10 C -0.048 4.048 11 C 0.095 3.905 12 H 0.079 0.921 13 C -0.547 4.547 14 H 0.078 0.922 15 C -0.135 4.135 16 N -0.522 5.522 17 Si 0.718 3.282 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.210 1.210 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.117 0.883 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.036 0.964 38 H 0.087 0.913 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.111 2.547 1.323 8.604 hybrid contribution -0.177 -0.702 -0.118 0.734 sum -8.288 1.845 1.205 8.576 Atomic orbital electron populations 1.21763 0.96649 1.00805 1.01364 1.21486 0.94875 0.97912 1.01904 1.21732 0.97586 0.95183 1.01086 1.21870 0.91233 0.89896 1.02210 1.59344 1.22283 1.15651 1.31656 1.20918 0.98808 0.93392 0.92010 1.22098 0.97987 0.97247 1.01334 1.21696 0.91573 1.00915 0.92406 1.60562 1.59375 1.08234 1.04760 1.22047 0.96551 0.92593 0.93641 1.19244 0.82430 0.91337 0.97523 0.92146 1.20921 1.18106 1.11323 1.04375 0.92217 1.25003 0.95846 0.97585 0.95114 1.69929 1.22779 1.36361 1.23084 0.86555 0.78388 0.81845 0.81377 1.19505 1.20884 1.20989 0.93371 0.93234 0.92988 0.91989 0.92509 0.93369 0.92139 0.96609 0.88327 0.92982 0.97506 0.91697 0.92457 0.93055 0.91443 0.86230 0.96419 0.91347 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.85 5.93 -26.73 -0.16 -2.01 16 3 C -0.12 -2.02 5.14 -26.73 -0.14 -2.16 16 4 C 0.08 1.61 4.56 -3.82 -0.02 1.59 16 5 N -0.56 -12.45 3.95 -233.09 -0.92 -13.37 16 6 C 0.08 1.56 4.84 -6.55 -0.03 1.53 16 7 C -0.15 -2.56 5.68 -27.07 -0.15 -2.71 16 8 C 0.06 1.18 6.00 -4.31 -0.03 1.15 16 9 N -0.70 -14.04 6.94 -114.72 -0.80 -14.84 16 10 C 0.08 1.81 5.67 -4.47 -0.03 1.79 16 11 C 0.20 4.96 2.17 -69.55 -0.15 4.80 16 12 H 0.06 1.73 5.57 -51.93 -0.29 1.45 16 13 C -0.51 -13.54 5.60 -34.44 -0.19 -13.73 16 14 H 0.06 1.60 7.64 -52.49 -0.40 1.20 16 15 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 16 N -0.88 -25.42 12.62 55.43 0.70 -24.72 16 17 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.80 6.39 -51.93 -0.33 0.46 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 29 H 0.10 2.32 5.79 -51.93 -0.30 2.01 16 30 H 0.05 0.94 5.98 -51.93 -0.31 0.63 16 31 H 0.01 0.15 7.59 -51.93 -0.39 -0.24 16 32 H 0.06 1.17 7.19 -51.93 -0.37 0.80 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.43 6.52 -51.93 -0.34 1.10 16 36 H 0.32 5.52 8.91 -39.29 -0.35 5.17 16 37 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 38 H 0.07 1.64 7.71 -51.93 -0.40 1.24 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 293.35 15.07 4.42 4.42 Total: -1.00 -27.92 293.35 -9.04 -36.96 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.80 Total: 5.11 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -0.62 Total: -9.47 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -1.02 Total: -52.93 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.92 -9.04 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219514637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.622 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds