Wall clock time and date at job start Mon Mar 30 2020 03:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47329 * 2 1 4 4 C 1.53000 * 109.47329 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.46957 * 180.02562 * 4 3 2 6 6 C 1.47908 * 110.99845 * 291.70911 * 5 4 3 7 7 C 1.50801 * 108.49565 * 153.79364 * 6 5 4 8 8 C 1.53695 * 112.10385 * 92.55469 * 7 6 5 9 9 N 1.48068 * 112.46852 * 318.55139 * 8 7 6 10 10 C 1.44573 * 113.85557 * 318.31786 * 9 8 7 11 11 C 1.40021 * 110.99647 * 163.75011 * 5 4 3 12 12 H 1.08996 * 108.95969 * 67.50509 * 11 5 4 13 13 C 1.50702 * 108.95523 * 308.75863 * 11 5 4 14 14 H 1.07995 * 120.00196 * 354.30135 * 13 11 5 15 15 C 1.37878 * 119.99608 * 174.30253 * 13 11 5 16 16 N 1.31513 * 120.00487 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99858 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47055 * 60.00059 * 17 15 13 19 19 H 1.48493 * 109.47172 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46975 * 300.00129 * 17 15 13 21 21 H 1.08991 * 109.47372 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47138 * 300.00212 * 1 2 3 23 23 H 1.09001 * 109.46830 * 59.99489 * 1 2 3 24 24 H 1.09004 * 109.47375 * 240.00482 * 2 1 3 25 25 H 1.08991 * 109.47339 * 120.00318 * 2 1 3 26 26 H 1.09001 * 109.47183 * 300.00413 * 3 2 1 27 27 H 1.09003 * 109.46922 * 60.00262 * 3 2 1 28 28 H 1.09001 * 109.46830 * 300.00511 * 4 3 2 29 29 H 1.08994 * 109.46903 * 60.00458 * 4 3 2 30 30 H 1.08998 * 109.63684 * 273.49567 * 6 5 4 31 31 H 1.08997 * 109.63158 * 34.09676 * 6 5 4 32 32 H 1.09001 * 108.95670 * 331.87378 * 7 6 5 33 33 H 1.09005 * 108.95649 * 213.23016 * 7 6 5 34 34 H 1.08998 * 108.88575 * 197.78075 * 8 7 6 35 35 H 1.08993 * 108.88402 * 79.31960 * 8 7 6 36 36 H 1.00894 * 111.00245 * 192.19311 * 9 8 7 37 37 H 1.09002 * 109.57345 * 334.41907 * 10 9 8 38 38 H 1.08998 * 109.57520 * 214.03922 * 10 9 8 39 39 H 0.96996 * 120.00452 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.7542 3.4982 -1.2824 7 6 3.6621 4.9830 -1.0356 8 6 5.0062 5.6921 -1.2660 9 7 6.1509 4.9244 -0.7251 10 6 5.8978 4.3307 0.5686 11 6 5.4103 2.8820 0.3652 12 1 6.0080 2.4151 -0.4176 13 6 5.6015 2.1163 1.6491 14 1 4.7451 1.7187 2.1733 15 6 6.8698 1.9235 2.1543 16 7 7.9126 2.4081 1.5162 17 14 7.1069 0.9737 3.7454 18 1 6.5716 -0.4021 3.5850 19 1 8.5541 0.9074 4.0713 20 1 6.3834 1.6614 4.8448 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.9337 0.9284 0.8891 29 1 3.9329 0.9289 -0.8909 30 1 4.5487 3.2949 -2.0004 31 1 2.8037 3.1318 -1.6700 32 1 3.3444 5.1520 -0.0067 33 1 2.9176 5.4083 -1.7087 34 1 4.9770 6.6689 -0.7834 35 1 5.1512 5.8340 -2.3369 36 1 6.9878 5.4876 -0.7070 37 1 5.1313 4.9042 1.0899 38 1 6.8165 4.3279 1.1552 39 1 8.8049 2.2721 1.8715 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219514710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:15 Heat of formation + Delta-G solvation = 1.888761 kcal Electronic energy + Delta-G solvation = -16805.457255 eV Core-core repulsion = 14361.688614 eV Total energy + Delta-G solvation = -2443.768642 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.48803 -35.41992 -33.72242 -32.88132 -30.81236 -28.76211 -26.25802 -25.41127 -23.35375 -22.14528 -20.45398 -19.21713 -19.15420 -16.47384 -15.86011 -15.00940 -14.64500 -14.21748 -13.96669 -13.79479 -13.62062 -13.05411 -12.64311 -12.41263 -12.05476 -11.68066 -11.34964 -11.13913 -10.85558 -10.82764 -10.71113 -10.67173 -10.46209 -10.18307 -9.99179 -9.97675 -9.73509 -9.46660 -8.83315 -8.38371 -7.30174 -6.86150 -5.95785 -4.01007 3.33495 3.38216 3.40874 4.43732 4.98934 5.10495 5.29909 5.37959 5.41040 5.48172 5.55859 5.75397 5.84724 5.93789 6.09214 6.13224 6.16439 6.23688 6.31812 6.38595 6.44812 6.51419 6.61860 6.65192 6.74935 6.84161 6.93643 7.00372 7.17194 7.42252 7.79055 7.89187 8.21404 8.23609 8.39625 8.61547 8.91233 9.16660 9.64983 11.09780 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.011749 C = 0.007205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.399250 B = 2382.665912 C = 3885.280226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.114 4.114 4 C 0.063 3.937 5 N -0.542 5.542 6 C 0.067 3.933 7 C -0.114 4.114 8 C 0.068 3.932 9 N -0.702 5.702 10 C 0.081 3.919 11 C 0.231 3.769 12 H 0.000 1.000 13 C -0.510 4.510 14 H 0.063 0.937 15 C 0.060 3.940 16 N -0.886 5.886 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.278 1.278 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.014 0.986 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.013 0.987 35 H 0.054 0.946 36 H 0.329 0.671 37 H 0.014 0.986 38 H 0.091 0.909 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 1.177 -3.982 9.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.065 4.065 5 N -0.266 5.266 6 C -0.061 4.061 7 C -0.152 4.152 8 C -0.061 4.061 9 N -0.333 5.333 10 C -0.048 4.048 11 C 0.122 3.878 12 H 0.017 0.983 13 C -0.549 4.549 14 H 0.081 0.919 15 C -0.142 4.142 16 N -0.525 5.525 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.032 0.968 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.032 0.968 38 H 0.109 0.891 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.124 0.894 -3.934 9.976 hybrid contribution 0.778 -0.033 0.786 1.107 sum -8.346 0.860 -3.148 8.961 Atomic orbital electron populations 1.21757 0.96547 1.00837 1.01471 1.21499 0.95049 0.97889 1.01801 1.21674 0.96889 0.95172 1.01505 1.22070 0.92663 0.90266 1.01472 1.59300 1.23016 1.15524 1.28760 1.21656 0.99023 0.93624 0.91813 1.21384 0.95608 0.96229 1.02023 1.22136 0.91709 0.93798 0.98504 1.59214 1.04295 1.38380 1.31415 1.21906 1.00710 0.95368 0.86816 1.18031 0.82396 0.92316 0.95046 0.98280 1.21318 0.92226 1.33620 1.07694 0.91854 1.24973 0.96130 0.95922 0.97175 1.69952 0.98290 1.45355 1.38868 0.86687 0.76857 0.80545 0.84065 1.20332 1.21431 1.20326 0.93364 0.92912 0.93174 0.92553 0.92016 0.93083 0.91837 0.88728 0.96820 0.94432 0.92648 0.91288 0.92762 0.96859 0.92759 0.85367 0.96765 0.89117 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.74 5.93 -26.73 -0.16 -1.90 16 3 C -0.11 -1.87 5.23 -26.73 -0.14 -2.01 16 4 C 0.06 1.28 4.66 -3.82 -0.02 1.26 16 5 N -0.54 -11.97 3.88 -232.88 -0.90 -12.87 16 6 C 0.07 1.28 5.16 -4.37 -0.02 1.26 16 7 C -0.11 -2.00 5.36 -27.47 -0.15 -2.14 16 8 C 0.07 1.19 6.49 -2.82 -0.02 1.17 16 9 N -0.70 -14.74 6.12 -113.50 -0.69 -15.43 16 10 C 0.08 1.97 5.38 -4.44 -0.02 1.94 16 11 C 0.23 5.90 1.50 -71.79 -0.11 5.79 16 12 H 0.00 -0.01 8.06 -51.93 -0.42 -0.43 16 13 C -0.51 -13.85 7.35 -34.44 -0.25 -14.10 16 14 H 0.06 1.71 6.34 -52.49 -0.33 1.38 16 15 C 0.06 1.64 5.17 -17.82 -0.09 1.54 16 16 N -0.89 -25.17 11.62 55.43 0.64 -24.52 16 17 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.80 6.36 -51.93 -0.33 0.47 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 2.12 5.41 -51.93 -0.28 1.84 16 29 H 0.01 0.28 8.10 -51.93 -0.42 -0.14 16 30 H 0.04 0.79 7.57 -51.93 -0.39 0.40 16 31 H 0.06 0.95 6.00 -51.93 -0.31 0.64 16 32 H 0.07 1.31 7.23 -51.93 -0.38 0.94 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.33 6.42 8.89 -39.29 -0.35 6.07 16 37 H 0.01 0.34 6.93 -51.93 -0.36 -0.02 16 38 H 0.09 2.43 6.10 -51.93 -0.32 2.11 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 293.19 15.07 4.42 4.42 Total: -1.00 -28.07 293.19 -9.00 -37.07 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.83 Total: 3.74 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.61 Total: -8.56 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.95 Total: -52.83 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.07 -9.00 -37.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219514710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.956 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds